Wall clock time and date at job start Wed Apr 1 2020 03:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35323 * 117.00287 * 2 1 4 4 C 1.39097 * 126.42860 * 264.52047 * 3 2 1 5 5 C 1.46736 * 126.50630 * 0.02562 * 4 3 2 6 6 O 1.21593 * 120.00103 * 359.97438 * 5 4 3 7 7 O 1.34826 * 120.00101 * 179.97438 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46941 * 180.02562 * 8 7 5 10 10 O 1.21294 * 120.00118 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00182 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00160 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99954 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99593 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00480 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99622 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46933 * 89.99903 * 16 14 12 18 18 H 1.48499 * 109.46932 * 209.99663 * 16 14 12 19 19 H 1.48495 * 109.47065 * 329.99553 * 16 14 12 20 20 C 1.41559 * 106.99178 * 179.97438 * 4 3 2 21 21 N 1.30330 * 108.18071 * 0.02562 * 20 4 3 22 22 N 1.34931 * 126.42762 * 84.52483 * 3 2 1 23 23 C 1.40154 * 125.75552 * 359.97438 * 22 3 2 24 24 C 1.38841 * 120.06588 * 221.04788 * 23 22 3 25 25 C 1.38120 * 119.92639 * 179.69781 * 24 23 22 26 26 C 1.38278 * 120.07222 * 0.59844 * 25 24 23 27 27 C 1.38286 * 120.12857 * 359.68083 * 26 25 24 28 28 C 1.38109 * 120.07282 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47638 * 184.83571 * 1 2 3 30 30 H 1.08997 * 109.46894 * 304.84238 * 1 2 3 31 31 H 1.09000 * 109.47237 * 64.83564 * 1 2 3 32 32 H 1.09002 * 109.47182 * 299.99896 * 8 7 5 33 33 H 1.08994 * 109.47107 * 59.99934 * 8 7 5 34 34 H 0.97001 * 119.99620 * 359.97438 * 11 9 8 35 35 H 0.96998 * 119.99951 * 180.02562 * 15 14 12 36 36 H 1.07993 * 125.91154 * 179.97438 * 20 4 3 37 37 H 1.07998 * 120.03861 * 359.97438 * 24 23 22 38 38 H 1.08009 * 119.96195 * 180.29924 * 25 24 23 39 39 H 1.07993 * 119.93789 * 179.69849 * 26 25 24 40 40 H 1.08008 * 119.96129 * 180.02562 * 27 26 25 41 41 H 1.07993 * 120.03867 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 6 2.5136 1.8931 -1.1141 5 6 2.4370 1.4489 -2.5105 6 8 1.9221 0.3812 -2.7814 7 8 2.9376 2.2245 -3.4931 8 6 2.8264 1.7220 -4.8508 9 6 3.4360 2.7158 -5.8057 10 8 3.9163 3.7465 -5.3836 11 7 3.4464 2.4599 -7.1290 12 6 4.0005 3.3642 -7.9977 13 1 4.4282 4.2819 -7.6218 14 6 4.0117 3.1000 -9.3618 15 7 3.4917 1.9832 -9.8192 16 14 4.7673 4.3320 -10.5455 17 1 6.2088 4.0247 -10.7262 18 1 4.0750 4.2474 -11.8566 19 1 4.6185 5.7030 -9.9948 20 6 3.0791 3.1032 -0.6452 21 7 2.9555 3.1341 0.6518 22 7 2.3149 1.9666 1.0807 23 6 2.0063 1.6426 2.4089 24 6 1.5218 2.6192 3.2686 25 6 1.2127 2.2953 4.5752 26 6 1.3970 1.0028 5.0308 27 6 1.8849 0.0293 4.1785 28 6 2.1901 0.3455 2.8692 29 1 -0.3634 -1.0239 0.0866 30 1 -0.3633 0.5871 0.8434 31 1 -0.3634 0.4370 -0.9301 32 1 3.3538 0.7714 -4.9307 33 1 1.7753 1.5763 -5.0994 34 1 3.0619 1.6358 -7.4666 35 1 3.4999 1.7987 -10.7714 36 1 3.5349 3.8680 -1.2564 37 1 1.3825 3.6301 2.9149 38 1 0.8312 3.0535 5.2432 39 1 1.1592 0.7530 6.0542 40 1 2.0274 -0.9795 4.5371 41 1 2.5706 -0.4152 2.2039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321294754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:11 Heat of formation + Delta-G solvation = -35.335824 kcal Electronic energy + Delta-G solvation = -28617.612261 eV Core-core repulsion = 24272.878495 eV Total energy + Delta-G solvation = -4344.733767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16664 -39.94442 -39.33690 -38.51777 -38.00814 -35.85982 -34.01608 -33.94395 -31.59350 -31.34534 -30.44926 -29.81212 -28.26246 -27.43159 -24.86431 -24.01586 -23.58913 -22.57676 -21.24139 -20.47187 -19.51187 -19.12044 -18.02200 -17.35902 -17.07530 -16.85475 -16.48352 -16.07504 -16.03326 -15.52410 -15.34654 -15.21274 -14.60868 -14.47947 -14.38579 -13.98937 -13.93129 -13.87177 -13.76955 -13.21175 -12.96865 -12.35560 -12.23636 -12.21608 -12.03559 -11.74516 -11.58960 -11.54968 -11.10573 -10.78372 -10.42551 -10.41440 -10.30999 -10.29160 -10.23120 -9.56859 -9.55525 -9.32054 -8.77473 -8.47394 -8.04458 -6.46518 -3.88336 0.26543 0.78997 1.10515 1.61209 1.86216 2.81939 2.96048 3.14688 3.16191 3.25884 3.31795 3.33215 3.78704 4.11220 4.19770 4.36025 4.45469 4.57185 4.64832 4.74399 4.81190 4.85821 4.93352 4.95265 5.02205 5.07833 5.19031 5.25504 5.39048 5.44500 5.67104 5.68370 5.76902 5.77842 5.91393 5.93985 6.09909 6.13523 6.36227 6.69601 6.97616 7.14105 7.51186 7.93970 8.05616 8.52730 9.10801 9.43535 9.93586 10.70766 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001902 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.583950 B =14716.217979 C =15361.625400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.293 6.293 3 C 0.332 3.668 4 C -0.269 4.269 5 C 0.540 3.460 6 O -0.512 6.512 7 O -0.321 6.321 8 C 0.064 3.936 9 C 0.440 3.560 10 O -0.575 6.575 11 N -0.554 5.554 12 C -0.301 4.301 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.934 3.066 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.126 3.874 21 N -0.275 5.275 22 N -0.324 5.324 23 C 0.136 3.864 24 C -0.101 4.101 25 C -0.106 4.106 26 C -0.114 4.114 27 C -0.102 4.102 28 C -0.113 4.113 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.395 0.605 35 H 0.273 0.727 36 H 0.214 0.786 37 H 0.136 0.864 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.135 0.865 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.053 -5.213 28.120 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.202 6.202 3 C 0.161 3.839 4 C -0.282 4.282 5 C 0.385 3.615 6 O -0.402 6.402 7 O -0.235 6.235 8 C -0.014 4.014 9 C 0.225 3.775 10 O -0.459 6.459 11 N -0.191 5.191 12 C -0.430 4.430 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.538 5.538 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.062 4.062 21 N -0.095 5.095 22 N -0.107 5.107 23 C 0.046 3.954 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.121 4.121 28 C -0.133 4.133 29 H 0.127 0.873 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.228 0.772 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.646 -4.507 29.165 30.486 hybrid contribution -0.185 -0.511 -1.712 1.796 sum -7.831 -5.019 27.453 28.986 Atomic orbital electron populations 1.23184 0.76253 1.04542 1.01709 1.86023 1.21673 1.19727 1.92773 1.19255 0.94430 0.84438 0.85730 1.19028 1.19355 0.99432 0.90397 1.19611 0.75157 0.81870 0.84894 1.90857 1.42616 1.22593 1.84167 1.86587 1.73125 1.47759 1.16020 1.22729 1.02428 0.97894 0.78338 1.19329 0.86501 0.88480 0.83220 1.90556 1.50558 1.27702 1.77109 1.41701 1.52411 1.21159 1.03846 1.19724 1.34867 1.01607 0.86841 0.87605 1.25305 0.97394 0.97404 0.97705 1.69614 1.44748 1.24027 1.15441 0.85802 0.78833 0.80376 0.78956 1.20298 1.20867 1.19298 1.24409 0.94526 0.96149 0.91118 1.77465 1.18144 1.00317 1.13545 1.46254 1.44865 1.15260 1.04291 1.17534 1.02018 0.94784 0.81083 1.21089 0.98044 0.99369 0.93582 1.21111 0.99481 0.96987 0.94840 1.21338 0.98664 0.93112 1.00172 1.21063 0.98539 1.00114 0.92388 1.21202 1.00383 0.94924 0.96802 0.87261 0.93296 0.91798 0.89485 0.89548 0.77158 0.91681 0.76940 0.84627 0.84817 0.85169 0.84761 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 11.13 101.05 1.12 1.46 16 2 O -0.29 -3.65 8.72 -24.91 -0.22 -3.87 16 3 C 0.33 4.50 6.68 -15.87 -0.11 4.40 16 4 C -0.27 -4.04 6.15 -104.88 -0.64 -4.69 16 5 C 0.54 9.41 7.94 34.16 0.27 9.68 16 6 O -0.51 -9.55 16.18 -23.01 -0.37 -9.92 16 7 O -0.32 -6.14 9.60 -47.52 -0.46 -6.60 16 8 C 0.06 1.24 5.96 36.00 0.21 1.45 16 9 C 0.44 10.64 7.86 -10.99 -0.09 10.56 16 10 O -0.58 -15.91 16.08 -14.12 -0.23 -16.14 16 11 N -0.55 -14.05 5.29 -10.96 -0.06 -14.11 16 12 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 13 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 14 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -24.17 13.05 55.50 0.72 -23.44 16 16 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C 0.13 1.68 11.86 -16.92 -0.20 1.48 16 21 N -0.28 -3.65 12.29 30.90 0.38 -3.27 16 22 N -0.32 -4.05 3.69 -10.26 -0.04 -4.09 16 23 C 0.14 1.39 6.29 -83.60 -0.53 0.86 16 24 C -0.10 -0.86 9.82 -39.40 -0.39 -1.24 16 25 C -0.11 -0.64 10.04 -39.61 -0.40 -1.04 16 26 C -0.11 -0.61 10.04 -39.55 -0.40 -1.01 16 27 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 28 C -0.11 -0.97 9.17 -39.40 -0.36 -1.33 16 29 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 34 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 35 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 36 H 0.21 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.50 8.06 -52.48 -0.42 0.07 16 39 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 40 H 0.13 0.52 8.06 -52.48 -0.42 0.10 16 41 H 0.14 1.21 7.36 -52.49 -0.39 0.83 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -34.36 375.63 -6.21 -40.57 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -4.45 Total: 7.81 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -2.14 Total: 11.62 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 1.01 Total: -44.91 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -1.27 Total: -36.53 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.36 -6.21 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321294754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.239 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds