Wall clock time and date at job start Wed Apr 1 2020 03:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35323 * 117.00287 * 2 1 4 4 C 1.39097 * 126.42860 * 264.52047 * 3 2 1 5 5 C 1.46736 * 126.50630 * 0.02562 * 4 3 2 6 6 O 1.21593 * 120.00103 * 359.97438 * 5 4 3 7 7 O 1.34826 * 120.00101 * 179.97438 * 5 4 3 8 8 C 1.45202 * 116.99882 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.46941 * 180.02562 * 8 7 5 10 10 O 1.21294 * 120.00118 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00182 * 180.02562 * 9 8 7 12 12 C 1.37098 * 120.00160 * 179.97438 * 11 9 8 13 13 H 1.07995 * 119.99954 * 359.97438 * 12 11 9 14 14 C 1.38947 * 119.99593 * 179.97438 * 12 11 9 15 15 N 1.31409 * 120.00480 * 359.97438 * 14 12 11 16 16 Si 1.86808 * 119.99622 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46933 * 89.99903 * 16 14 12 18 18 H 1.48499 * 109.46932 * 209.99663 * 16 14 12 19 19 H 1.48495 * 109.47065 * 329.99553 * 16 14 12 20 20 C 1.41559 * 106.99178 * 179.97438 * 4 3 2 21 21 N 1.30330 * 108.18071 * 0.02562 * 20 4 3 22 22 N 1.34931 * 126.42762 * 84.52483 * 3 2 1 23 23 C 1.40154 * 125.75552 * 359.97438 * 22 3 2 24 24 C 1.38841 * 120.06588 * 221.04788 * 23 22 3 25 25 C 1.38120 * 119.92639 * 179.69781 * 24 23 22 26 26 C 1.38278 * 120.07222 * 0.59844 * 25 24 23 27 27 C 1.38286 * 120.12857 * 359.68083 * 26 25 24 28 28 C 1.38109 * 120.07282 * 0.02562 * 27 26 25 29 29 H 1.08997 * 109.47638 * 184.83571 * 1 2 3 30 30 H 1.08997 * 109.46894 * 304.84238 * 1 2 3 31 31 H 1.09000 * 109.47237 * 64.83564 * 1 2 3 32 32 H 1.09002 * 109.47182 * 299.99896 * 8 7 5 33 33 H 1.08994 * 109.47107 * 59.99934 * 8 7 5 34 34 H 0.97001 * 119.99620 * 359.97438 * 11 9 8 35 35 H 0.96998 * 119.99951 * 180.02562 * 15 14 12 36 36 H 1.07993 * 125.91154 * 179.97438 * 20 4 3 37 37 H 1.07998 * 120.03861 * 359.97438 * 24 23 22 38 38 H 1.08009 * 119.96195 * 180.29924 * 25 24 23 39 39 H 1.07993 * 119.93789 * 179.69849 * 26 25 24 40 40 H 1.08008 * 119.96129 * 180.02562 * 27 26 25 41 41 H 1.07993 * 120.03867 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2057 0.0000 4 6 2.5136 1.8931 -1.1141 5 6 2.4370 1.4489 -2.5105 6 8 1.9221 0.3812 -2.7814 7 8 2.9376 2.2245 -3.4931 8 6 2.8264 1.7220 -4.8508 9 6 3.4360 2.7158 -5.8057 10 8 3.9163 3.7465 -5.3836 11 7 3.4464 2.4599 -7.1290 12 6 4.0005 3.3642 -7.9977 13 1 4.4282 4.2819 -7.6218 14 6 4.0117 3.1000 -9.3618 15 7 3.4917 1.9832 -9.8192 16 14 4.7673 4.3320 -10.5455 17 1 6.2088 4.0247 -10.7262 18 1 4.0750 4.2474 -11.8566 19 1 4.6185 5.7030 -9.9948 20 6 3.0791 3.1032 -0.6452 21 7 2.9555 3.1341 0.6518 22 7 2.3149 1.9666 1.0807 23 6 2.0063 1.6426 2.4089 24 6 1.5218 2.6192 3.2686 25 6 1.2127 2.2953 4.5752 26 6 1.3970 1.0028 5.0308 27 6 1.8849 0.0293 4.1785 28 6 2.1901 0.3455 2.8692 29 1 -0.3634 -1.0239 0.0866 30 1 -0.3633 0.5871 0.8434 31 1 -0.3634 0.4370 -0.9301 32 1 3.3538 0.7714 -4.9307 33 1 1.7753 1.5763 -5.0994 34 1 3.0619 1.6358 -7.4666 35 1 3.4999 1.7987 -10.7714 36 1 3.5349 3.8680 -1.2564 37 1 1.3825 3.6301 2.9149 38 1 0.8312 3.0535 5.2432 39 1 1.1592 0.7530 6.0542 40 1 2.0274 -0.9795 4.5371 41 1 2.5706 -0.4152 2.2039 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321294754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:10 Heat of formation + Delta-G solvation = -57.005425 kcal Electronic energy + Delta-G solvation = -28618.551926 eV Core-core repulsion = 24272.878495 eV Total energy + Delta-G solvation = -4345.673431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.14913 -41.32643 -40.09767 -39.83108 -39.44407 -37.35147 -36.00136 -34.81246 -33.39331 -32.15948 -31.51194 -30.66621 -29.74773 -28.28992 -26.66909 -25.12044 -24.34541 -23.43488 -22.11099 -21.61344 -21.38711 -20.05222 -20.03955 -18.62806 -18.04533 -17.90219 -17.54209 -17.39805 -17.24649 -17.00164 -16.48528 -16.07836 -16.01612 -15.74190 -15.68645 -15.21456 -15.11267 -14.74929 -14.63992 -14.50076 -13.98855 -13.77374 -13.69557 -13.53875 -13.07357 -12.92356 -12.78928 -12.58405 -12.45230 -12.26097 -12.10763 -11.83249 -11.74656 -11.55434 -11.55307 -11.23277 -10.48471 -10.30577 -10.09507 -10.08991 -9.56273 -8.50280 -6.00654 -0.55837 0.24156 0.27962 0.66063 0.79929 1.37544 1.40065 1.47774 1.59457 1.82718 1.90305 2.26798 2.31564 2.62709 3.05122 3.15344 3.31304 3.60952 3.76887 3.82158 3.92878 3.97845 4.07853 4.16203 4.19478 4.23576 4.24881 4.31224 4.32956 4.39030 4.46822 4.57047 4.92675 4.95376 5.16801 5.23974 5.28355 5.36554 5.39289 5.43426 5.79804 5.91202 6.04846 6.17375 6.48234 6.67097 7.05040 7.42259 7.95739 8.66763 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.032118 B = 0.001902 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.583950 B =14716.217979 C =15361.625400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.304 6.304 3 C 0.341 3.659 4 C -0.300 4.300 5 C 0.545 3.455 6 O -0.529 6.529 7 O -0.334 6.334 8 C 0.074 3.926 9 C 0.439 3.561 10 O -0.615 6.615 11 N -0.558 5.558 12 C -0.337 4.337 13 H 0.085 0.915 14 C -0.010 4.010 15 N -0.916 5.916 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.270 1.270 19 H -0.271 1.271 20 C 0.127 3.873 21 N -0.285 5.285 22 N -0.314 5.314 23 C 0.099 3.901 24 C -0.111 4.111 25 C -0.102 4.102 26 C -0.102 4.102 27 C -0.099 4.099 28 C -0.122 4.122 29 H 0.137 0.863 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.400 0.600 35 H 0.280 0.720 36 H 0.224 0.776 37 H 0.129 0.871 38 H 0.161 0.839 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -5.983 30.199 32.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.168 3.832 4 C -0.314 4.314 5 C 0.391 3.609 6 O -0.420 6.420 7 O -0.250 6.250 8 C -0.003 4.003 9 C 0.225 3.775 10 O -0.501 6.501 11 N -0.196 5.196 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.210 4.210 15 N -0.556 5.556 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.061 4.061 21 N -0.105 5.105 22 N -0.097 5.097 23 C 0.009 3.991 24 C -0.131 4.131 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.118 4.118 28 C -0.142 4.142 29 H 0.155 0.845 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.240 0.760 37 H 0.147 0.853 38 H 0.178 0.822 39 H 0.182 0.818 40 H 0.178 0.822 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.458 -5.302 31.270 32.824 hybrid contribution -0.012 -0.353 -2.134 2.164 sum -8.469 -5.655 29.135 30.864 Atomic orbital electron populations 1.23417 0.74411 1.06512 1.01648 1.86003 1.23363 1.19133 1.92799 1.19271 0.93727 0.84492 0.85708 1.18977 1.21951 1.00869 0.89566 1.19867 0.74423 0.81420 0.85185 1.90831 1.43613 1.23196 1.84396 1.86580 1.73770 1.48545 1.16058 1.22527 1.03350 0.96569 0.77870 1.20057 0.85397 0.88626 0.83388 1.90523 1.52136 1.29680 1.77802 1.41729 1.52487 1.21083 1.04285 1.19729 1.36859 1.01945 0.88059 0.89686 1.26125 0.97174 0.99133 0.98595 1.69674 1.44666 1.24994 1.16231 0.84850 0.78278 0.77801 0.76938 1.19528 1.19462 1.19527 1.24543 0.94329 0.95925 0.91269 1.77421 1.18508 1.01189 1.13341 1.46426 1.43660 1.14484 1.05103 1.17926 1.04658 0.96123 0.80347 1.21196 0.98553 0.98804 0.94546 1.21464 0.98430 0.98197 0.93948 1.21778 0.96483 0.92302 1.01468 1.21410 0.97441 1.01674 0.91234 1.21267 1.01020 0.94003 0.97940 0.84505 0.91984 0.92990 0.87622 0.87421 0.76566 0.91015 0.76010 0.85259 0.82172 0.81786 0.82196 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.13 113.37 1.26 1.85 16 2 O -0.30 -7.55 8.72 -79.19 -0.69 -8.24 16 3 C 0.34 9.40 6.68 84.42 0.56 9.96 16 4 C -0.30 -9.30 6.15 -20.03 -0.12 -9.42 16 5 C 0.55 19.37 7.94 70.04 0.56 19.93 16 6 O -0.53 -19.88 16.18 23.05 0.37 -19.51 16 7 O -0.33 -13.09 9.60 -50.99 -0.49 -13.58 16 8 C 0.07 2.89 5.96 71.23 0.42 3.31 16 9 C 0.44 21.73 7.86 87.66 0.69 22.41 16 10 O -0.61 -35.15 16.08 15.72 0.25 -34.90 16 11 N -0.56 -28.94 5.29 -306.99 -1.62 -30.56 16 12 C -0.34 -19.04 9.68 84.04 0.81 -18.23 16 13 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 14 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 15 N -0.92 -48.96 13.05 21.66 0.28 -48.67 16 16 Si 1.00 42.38 29.55 68.60 2.03 44.41 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 C 0.13 3.52 11.86 85.73 1.02 4.54 16 21 N -0.28 -7.74 12.29 -56.16 -0.69 -8.43 16 22 N -0.31 -7.96 3.69 -298.03 -1.10 -9.06 16 23 C 0.10 1.96 6.29 38.10 0.24 2.20 16 24 C -0.11 -1.77 9.82 22.39 0.22 -1.55 16 25 C -0.10 -0.94 10.04 22.25 0.22 -0.72 16 26 C -0.10 -0.70 10.04 22.29 0.22 -0.48 16 27 C -0.10 -0.93 10.04 22.25 0.22 -0.71 16 28 C -0.12 -1.96 9.17 22.39 0.21 -1.76 16 29 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.11 3.74 8.14 -2.39 -0.02 3.72 16 34 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 35 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 36 H 0.22 5.44 8.06 -2.91 -0.02 5.42 16 37 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 38 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.16 0.07 8.06 -2.91 -0.02 0.04 16 40 H 0.16 0.65 8.06 -2.91 -0.02 0.62 16 41 H 0.13 2.22 7.36 -2.91 -0.02 2.19 16 Total: -1.00 -75.39 375.63 5.71 -69.68 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: 0.36 Total: 27.55 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 7.00 Total: 31.30 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -3.13 Total: -96.72 kcal Atomic # 8 Polarization: -75.67 SS G_CDS: -0.55 Total: -76.22 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -75.39 5.71 -69.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321294754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.674 kcal (2) G-P(sol) polarization free energy of solvation -75.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds