Wall clock time and date at job start Wed Apr 1 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47083 * 2 1 4 4 C 1.46501 * 119.99849 * 274.81846 * 3 2 1 5 5 C 1.50701 * 109.47209 * 263.73631 * 4 3 2 6 6 H 1.07997 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00426 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46746 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47138 * 119.99735 * 9 7 5 12 12 H 1.48500 * 109.47011 * 239.99899 * 9 7 5 13 13 C 1.34779 * 120.00262 * 94.82126 * 3 2 1 14 14 O 1.21356 * 119.99508 * 354.61603 * 13 3 2 15 15 C 1.49350 * 120.00117 * 174.61779 * 13 3 2 16 16 O 1.21382 * 120.00209 * 0.25904 * 15 13 3 17 17 N 1.34777 * 120.00237 * 180.26462 * 15 13 3 18 18 C 1.39755 * 120.00218 * 184.90662 * 17 15 13 19 19 C 1.38948 * 120.49038 * 145.21744 * 18 17 15 20 20 N 1.31782 * 120.65117 * 179.97438 * 19 18 17 21 21 C 1.31891 * 121.80160 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.93441 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.38133 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.46728 * 359.97438 * 23 22 21 25 25 F 1.39899 * 109.47666 * 119.99872 * 23 22 21 26 26 F 1.39903 * 109.47033 * 240.00293 * 23 22 21 27 27 C 1.38531 * 119.24328 * 359.97438 * 22 21 20 28 28 H 1.08998 * 109.47243 * 60.00113 * 1 2 3 29 29 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47501 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.47024 * 239.99849 * 2 1 3 32 32 H 1.08998 * 109.47243 * 119.99887 * 2 1 3 33 33 H 1.08999 * 109.47533 * 23.73392 * 4 3 2 34 34 H 1.09002 * 109.47434 * 143.74087 * 4 3 2 35 35 H 0.97005 * 119.99647 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99817 * 4.90711 * 17 15 13 37 37 H 1.07999 * 119.67547 * 0.02562 * 19 18 17 38 38 H 1.07994 * 119.53520 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.82176 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1619 2.1073 -1.2643 5 6 3.5890 2.0116 -1.7392 6 1 4.3162 1.4649 -1.1573 7 6 3.9664 2.6227 -2.9161 8 7 3.0808 3.2889 -3.6245 9 14 5.7351 2.5035 -3.5052 10 1 6.5268 1.7042 -2.5359 11 1 5.7703 1.8453 -4.8358 12 1 6.3142 3.8668 -3.6117 13 6 2.3354 1.9839 1.1631 14 8 2.1249 1.4189 2.2163 15 6 2.9458 3.3469 1.1557 16 8 3.1519 3.9140 0.1024 17 7 3.2678 3.9475 2.3185 18 6 3.7431 5.2617 2.3181 19 6 3.4211 6.1282 3.3555 20 7 3.8680 7.3679 3.3586 21 6 4.6313 7.8340 2.3892 22 6 4.9954 7.0323 1.3236 23 6 5.8676 7.5780 0.2224 24 9 6.1818 8.9137 0.4950 25 9 7.0458 6.8276 0.1454 26 9 5.1843 7.4994 -0.9959 27 6 4.5493 5.7215 1.2794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5002 1.6698 -2.0118 34 1 1.8986 3.1543 -1.1140 35 1 3.3463 3.7185 -4.4527 36 1 3.1697 3.4675 3.1556 37 1 2.7992 5.7820 4.1677 38 1 4.9767 8.8565 2.4286 39 1 4.8180 5.0729 0.4586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338043123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:13 Heat of formation + Delta-G solvation = -161.761422 kcal Electronic energy + Delta-G solvation = -31082.502357 eV Core-core repulsion = 26190.429625 eV Total energy + Delta-G solvation = -4892.072732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.12531 -47.68135 -47.52663 -41.10089 -39.90596 -38.12732 -35.99379 -34.74998 -33.17002 -32.73110 -30.64059 -30.39850 -27.18192 -26.50411 -25.36687 -23.86421 -23.14253 -22.65483 -21.41192 -19.62908 -18.65990 -18.42572 -18.39811 -17.31994 -17.20366 -16.73870 -16.50277 -16.23083 -15.77301 -15.20750 -15.02387 -14.53386 -14.38292 -14.33759 -14.06946 -13.98994 -13.83345 -13.77744 -13.71009 -13.53815 -13.27168 -13.06267 -13.00043 -12.45361 -12.26226 -12.08033 -11.77429 -11.70061 -11.04008 -11.00200 -10.86566 -10.71537 -10.56589 -10.13242 -10.05042 -9.96556 -9.75368 -8.86277 -8.53875 -8.37825 -7.97648 -6.10197 -4.13052 0.51078 0.93670 1.92685 2.52077 2.66063 3.25840 3.33120 3.35287 3.36469 3.61842 3.71325 3.83535 4.05240 4.26664 4.39017 4.42290 4.54059 4.71895 4.79086 5.00787 5.09536 5.26715 5.44097 5.60496 5.67960 5.72136 5.90275 5.92495 6.07618 6.20327 6.47623 6.50510 6.58096 7.09394 7.26985 7.34042 7.55842 7.77541 7.95382 8.07743 8.13938 8.49200 8.86997 9.50279 10.98549 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.004897 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.309503 B = 5716.772249 C = 7987.160596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.110 3.890 3 N -0.555 5.555 4 C 0.227 3.773 5 C -0.518 4.518 6 H 0.054 0.946 7 C 0.071 3.929 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.281 1.281 13 C 0.509 3.491 14 O -0.559 6.559 15 C 0.488 3.512 16 O -0.425 6.425 17 N -0.657 5.657 18 C 0.111 3.889 19 C 0.104 3.896 20 N -0.461 5.461 21 C 0.124 3.876 22 C -0.216 4.216 23 C 0.516 3.484 24 F -0.178 7.178 25 F -0.174 7.174 26 F -0.165 7.165 27 C -0.031 4.031 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.263 0.737 36 H 0.422 0.578 37 H 0.169 0.831 38 H 0.170 0.830 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 4.737 11.440 12.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.285 5.285 4 C 0.109 3.891 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.132 4.132 8 N -0.525 5.525 9 Si 0.716 3.284 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.207 1.207 13 C 0.291 3.709 14 O -0.441 6.441 15 C 0.269 3.731 16 O -0.292 6.292 17 N -0.307 5.307 18 C 0.013 3.987 19 C -0.056 4.056 20 N -0.169 5.169 21 C -0.034 4.034 22 C -0.220 4.220 23 C 0.460 3.540 24 F -0.159 7.159 25 F -0.155 7.155 26 F -0.146 7.146 27 C -0.059 4.059 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.260 0.740 37 H 0.186 0.814 38 H 0.187 0.813 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.410 5.429 11.580 12.796 hybrid contribution 1.348 -0.717 -1.099 1.881 sum 1.758 4.712 10.481 11.625 Atomic orbital electron populations 1.22103 0.96098 1.01697 1.02319 1.21461 0.94063 0.82558 1.03144 1.48324 1.58453 1.13547 1.08218 1.19968 0.97875 0.93309 0.77981 1.21201 0.94338 1.33442 1.06676 0.92733 1.24792 0.97200 0.94763 0.96411 1.69914 1.33687 1.33856 1.15055 0.86600 0.85101 0.78059 0.78656 1.19872 1.20908 1.20697 1.19550 0.80533 0.86116 0.84712 1.90663 1.56200 1.66270 1.30937 1.20634 0.80632 0.88206 0.83595 1.91014 1.46043 1.63389 1.28708 1.43176 1.64807 1.11473 1.11264 1.18651 0.96251 0.86541 0.97284 1.22926 0.96829 0.88095 0.97773 1.67844 1.09897 1.13835 1.25306 1.22592 0.93100 0.99941 0.87789 1.20957 1.05299 0.97367 0.98417 1.18030 0.78726 0.75286 0.81921 1.93153 1.93443 1.35620 1.93711 1.93234 1.49534 1.76234 1.96540 1.93303 1.79319 1.95861 1.46163 1.21710 0.90751 0.94475 0.98919 0.92169 0.91943 0.92679 0.89796 0.90472 0.94727 0.91821 0.92767 0.73953 0.81372 0.81292 0.81387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.84 6.11 -4.05 -0.02 1.81 16 3 N -0.56 -11.10 2.47 -175.61 -0.43 -11.53 16 4 C 0.23 5.37 4.78 -5.19 -0.02 5.35 16 5 C -0.52 -13.49 7.79 -34.44 -0.27 -13.75 16 6 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 8 N -0.89 -25.05 13.29 55.43 0.74 -24.31 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 C 0.51 9.79 7.67 -11.63 -0.09 9.70 16 14 O -0.56 -10.61 16.04 5.49 0.09 -10.52 16 15 C 0.49 9.01 7.58 -11.63 -0.09 8.92 16 16 O -0.43 -9.30 9.59 5.47 0.05 -9.25 16 17 N -0.66 -9.33 5.33 -10.20 -0.05 -9.39 16 18 C 0.11 1.53 6.32 -83.59 -0.53 1.00 16 19 C 0.10 1.19 11.13 -17.31 -0.19 0.99 16 20 N -0.46 -5.65 10.35 -13.07 -0.14 -5.79 16 21 C 0.12 1.49 10.59 -17.53 -0.19 1.31 16 22 C -0.22 -3.01 5.38 -104.51 -0.56 -3.58 16 23 C 0.52 7.42 3.33 36.01 0.12 7.54 16 24 F -0.18 -2.22 16.00 2.25 0.04 -2.18 16 25 F -0.17 -2.64 17.25 2.25 0.04 -2.60 16 26 F -0.17 -2.80 17.25 2.25 0.04 -2.76 16 27 C -0.03 -0.48 8.40 -39.08 -0.33 -0.81 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 32 H 0.08 1.24 7.36 -51.93 -0.38 0.85 16 33 H 0.03 0.85 8.02 -51.93 -0.42 0.43 16 34 H 0.06 1.64 5.84 -51.93 -0.30 1.34 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.42 4.88 8.30 -40.82 -0.34 4.55 16 37 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 38 H 0.17 1.60 7.16 -52.49 -0.38 1.22 16 39 H 0.17 3.11 6.30 -52.48 -0.33 2.77 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -30.14 352.91 -5.03 -35.17 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.80 Total: 3.31 kcal Atomic # 6 Polarization: 20.25 SS G_CDS: -1.89 Total: 18.36 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: 0.11 Total: -51.02 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.14 Total: -19.77 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 0.11 Total: -7.55 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.14 -5.03 -35.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338043123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.595 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds