Wall clock time and date at job start Wed Apr 1 2020 02:57:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47083 * 2 1 4 4 C 1.46501 * 119.99849 * 274.81846 * 3 2 1 5 5 C 1.50701 * 109.47209 * 263.73631 * 4 3 2 6 6 H 1.07997 * 119.99917 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00232 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99795 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 120.00426 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.46746 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47138 * 119.99735 * 9 7 5 12 12 H 1.48500 * 109.47011 * 239.99899 * 9 7 5 13 13 C 1.34779 * 120.00262 * 94.82126 * 3 2 1 14 14 O 1.21356 * 119.99508 * 354.61603 * 13 3 2 15 15 C 1.49350 * 120.00117 * 174.61779 * 13 3 2 16 16 O 1.21382 * 120.00209 * 0.25904 * 15 13 3 17 17 N 1.34777 * 120.00237 * 180.26462 * 15 13 3 18 18 C 1.39755 * 120.00218 * 184.90662 * 17 15 13 19 19 C 1.38948 * 120.49038 * 145.21744 * 18 17 15 20 20 N 1.31782 * 120.65117 * 179.97438 * 19 18 17 21 21 C 1.31891 * 121.80160 * 359.97438 * 20 19 18 22 22 C 1.38239 * 120.93441 * 359.97438 * 21 20 19 23 23 C 1.50701 * 120.38133 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.46728 * 359.97438 * 23 22 21 25 25 F 1.39899 * 109.47666 * 119.99872 * 23 22 21 26 26 F 1.39903 * 109.47033 * 240.00293 * 23 22 21 27 27 C 1.38531 * 119.24328 * 359.97438 * 22 21 20 28 28 H 1.08998 * 109.47243 * 60.00113 * 1 2 3 29 29 H 1.09000 * 109.47342 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47501 * 300.00230 * 1 2 3 31 31 H 1.08996 * 109.47024 * 239.99849 * 2 1 3 32 32 H 1.08998 * 109.47243 * 119.99887 * 2 1 3 33 33 H 1.08999 * 109.47533 * 23.73392 * 4 3 2 34 34 H 1.09002 * 109.47434 * 143.74087 * 4 3 2 35 35 H 0.97005 * 119.99647 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99817 * 4.90711 * 17 15 13 37 37 H 1.07999 * 119.67547 * 0.02562 * 19 18 17 38 38 H 1.07994 * 119.53520 * 179.97438 * 21 20 19 39 39 H 1.08006 * 120.82176 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1619 2.1073 -1.2643 5 6 3.5890 2.0116 -1.7392 6 1 4.3162 1.4649 -1.1573 7 6 3.9664 2.6227 -2.9161 8 7 3.0808 3.2889 -3.6245 9 14 5.7351 2.5035 -3.5052 10 1 6.5268 1.7042 -2.5359 11 1 5.7703 1.8453 -4.8358 12 1 6.3142 3.8668 -3.6117 13 6 2.3354 1.9839 1.1631 14 8 2.1249 1.4189 2.2163 15 6 2.9458 3.3469 1.1557 16 8 3.1519 3.9140 0.1024 17 7 3.2678 3.9475 2.3185 18 6 3.7431 5.2617 2.3181 19 6 3.4211 6.1282 3.3555 20 7 3.8680 7.3679 3.3586 21 6 4.6313 7.8340 2.3892 22 6 4.9954 7.0323 1.3236 23 6 5.8676 7.5780 0.2224 24 9 6.1818 8.9137 0.4950 25 9 7.0458 6.8276 0.1454 26 9 5.1843 7.4994 -0.9959 27 6 4.5493 5.7215 1.2794 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5002 1.6698 -2.0118 34 1 1.8986 3.1543 -1.1140 35 1 3.3463 3.7185 -4.4527 36 1 3.1697 3.4675 3.1556 37 1 2.7992 5.7820 4.1677 38 1 4.9767 8.8565 2.4286 39 1 4.8180 5.0729 0.4586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338043123.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:12 Heat of formation + Delta-G solvation = -180.945552 kcal Electronic energy + Delta-G solvation = -31083.334244 eV Core-core repulsion = 26190.429625 eV Total energy + Delta-G solvation = -4892.904619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.30086 -48.80813 -48.77536 -42.36222 -41.21190 -39.55793 -37.51274 -36.10649 -34.69577 -34.23850 -32.07114 -31.56978 -29.06147 -27.60702 -26.72448 -25.03117 -25.02178 -23.82816 -22.70804 -20.98993 -19.86495 -19.62181 -19.60374 -18.85503 -18.54485 -18.29805 -17.86643 -17.41174 -17.15209 -16.79785 -16.52631 -16.14939 -15.71250 -15.53863 -15.26328 -15.23159 -15.19057 -14.98261 -14.92533 -14.86014 -14.51331 -14.44652 -14.27656 -14.02101 -13.66733 -13.44016 -13.31362 -13.15690 -12.79835 -12.71052 -12.37513 -12.17558 -12.09645 -11.80440 -11.67944 -11.20889 -11.08165 -10.64220 -10.19069 -9.72990 -9.56884 -8.16888 -6.24338 -0.52645 -0.21365 0.48553 1.25324 1.33820 1.38188 1.45624 1.47460 2.11320 2.34200 2.40298 2.47204 2.56292 2.87525 3.17959 3.24600 3.30305 3.36425 3.54126 3.61535 3.90581 4.07304 4.15690 4.35164 4.52020 4.67996 4.70321 4.75801 4.86372 4.94642 5.01977 5.24215 5.32191 5.41695 5.53463 5.73830 5.96345 6.09026 6.28640 6.54591 6.69627 6.80021 7.01655 7.41827 8.91256 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.009801 B = 0.004897 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2856.309503 B = 5716.772249 C = 7987.160596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.104 3.896 3 N -0.564 5.564 4 C 0.248 3.752 5 C -0.514 4.514 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.918 5.918 9 Si 0.939 3.061 10 H -0.269 1.269 11 H -0.273 1.273 12 H -0.288 1.288 13 C 0.508 3.492 14 O -0.554 6.554 15 C 0.488 3.512 16 O -0.468 6.468 17 N -0.635 5.635 18 C 0.095 3.905 19 C 0.130 3.870 20 N -0.464 5.464 21 C 0.140 3.860 22 C -0.225 4.225 23 C 0.517 3.483 24 F -0.164 7.164 25 F -0.181 7.181 26 F -0.185 7.185 27 C -0.049 4.049 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.436 0.564 37 H 0.210 0.790 38 H 0.198 0.802 39 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 4.883 13.693 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.294 5.294 4 C 0.127 3.873 5 C -0.553 4.553 6 H 0.064 0.936 7 C -0.174 4.174 8 N -0.558 5.558 9 Si 0.766 3.234 10 H -0.194 1.194 11 H -0.199 1.199 12 H -0.214 1.214 13 C 0.290 3.710 14 O -0.435 6.435 15 C 0.270 3.730 16 O -0.337 6.337 17 N -0.286 5.286 18 C -0.002 4.002 19 C -0.030 4.030 20 N -0.171 5.171 21 C -0.017 4.017 22 C -0.229 4.229 23 C 0.462 3.538 24 F -0.145 7.145 25 F -0.163 7.163 26 F -0.166 7.166 27 C -0.077 4.077 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.278 0.722 37 H 0.226 0.774 38 H 0.215 0.785 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.361 5.560 13.899 14.974 hybrid contribution 1.367 -0.723 -1.658 2.267 sum 1.728 4.837 12.240 13.274 Atomic orbital electron populations 1.22030 0.94097 1.03552 1.01558 1.21701 0.95729 0.80802 1.03547 1.48288 1.59180 1.14712 1.07238 1.19445 0.96226 0.92464 0.79148 1.21370 0.95267 1.32399 1.06225 0.93559 1.25438 1.00278 0.94798 0.96883 1.70007 1.35204 1.35094 1.15527 0.85791 0.81409 0.77614 0.78608 1.19365 1.19888 1.21392 1.19706 0.80323 0.86473 0.84535 1.90653 1.56028 1.66355 1.30457 1.20603 0.80318 0.87910 0.84201 1.91019 1.48129 1.64222 1.30366 1.42900 1.63461 1.11726 1.10546 1.18759 0.96973 0.86592 0.97923 1.23491 0.95222 0.87117 0.97150 1.68016 1.10061 1.13963 1.25104 1.23033 0.91585 1.00644 0.86454 1.20919 1.05961 0.96994 0.99064 1.18098 0.78503 0.75817 0.81421 1.93173 1.93324 1.34475 1.93509 1.93214 1.49935 1.76569 1.96543 1.93262 1.79776 1.96021 1.47581 1.21526 0.92267 0.95039 0.98882 0.93212 0.88769 0.93060 0.89848 0.89558 0.95952 0.93997 0.92882 0.72241 0.77392 0.78491 0.84871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 10.24 71.98 0.74 -3.44 16 2 C 0.10 3.36 6.11 86.38 0.53 3.89 16 3 N -0.56 -22.65 2.47 -827.87 -2.05 -24.70 16 4 C 0.25 12.04 4.78 85.63 0.41 12.45 16 5 C -0.51 -27.40 7.79 25.60 0.20 -27.20 16 6 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 7 C 0.03 1.42 5.46 84.65 0.46 1.88 16 8 N -0.92 -53.34 13.29 21.45 0.28 -53.05 16 9 Si 0.94 44.34 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 C 0.51 19.37 7.67 87.24 0.67 20.04 16 14 O -0.55 -20.19 16.04 -3.26 -0.05 -20.25 16 15 C 0.49 18.18 7.58 87.24 0.66 18.84 16 16 O -0.47 -21.27 9.59 -3.35 -0.03 -21.31 16 17 N -0.64 -17.40 5.33 -304.52 -1.62 -19.02 16 18 C 0.09 2.50 6.32 38.30 0.24 2.74 16 19 C 0.13 2.57 11.13 84.87 0.94 3.51 16 20 N -0.46 -9.86 10.35 -195.27 -2.02 -11.88 16 21 C 0.14 3.03 10.59 84.68 0.90 3.92 16 22 C -0.23 -6.15 5.38 -19.79 -0.11 -6.26 16 23 C 0.52 14.88 3.33 71.24 0.24 15.11 16 24 F -0.16 -3.88 16.00 44.97 0.72 -3.16 16 25 F -0.18 -5.58 17.25 44.97 0.78 -4.81 16 26 F -0.19 -6.48 17.25 44.97 0.78 -5.70 16 27 C -0.05 -1.56 8.40 22.59 0.19 -1.37 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 2.69 8.11 -2.39 -0.02 2.67 16 32 H 0.09 2.64 7.36 -2.39 -0.02 2.62 16 33 H 0.02 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.04 2.26 5.84 -2.39 -0.01 2.25 16 35 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 36 H 0.44 9.18 8.30 -92.71 -0.77 8.41 16 37 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 38 H 0.20 3.07 7.16 -2.91 -0.02 3.05 16 39 H 0.13 5.24 6.30 -2.91 -0.02 5.22 16 Total: -1.00 -66.31 352.91 5.24 -61.07 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.37 Total: 12.30 kcal Atomic # 6 Polarization: 38.06 SS G_CDS: 6.07 Total: 44.13 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -5.41 Total: -108.65 kcal Atomic # 8 Polarization: -41.47 SS G_CDS: -0.08 Total: -41.55 kcal Atomic # 9 Polarization: -15.94 SS G_CDS: 2.27 Total: -13.67 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.31 5.24 -61.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338043123.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.872 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds