Wall clock time and date at job start Wed Apr 1 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47344 * 2 1 4 4 C 1.50699 * 109.46617 * 240.00134 * 2 1 3 5 5 H 1.07998 * 120.00066 * 245.30143 * 4 2 1 6 6 C 1.37879 * 120.00233 * 65.30117 * 4 2 1 7 7 N 1.31517 * 120.00108 * 185.72665 * 6 4 2 8 8 Si 1.86799 * 119.99723 * 6.00401 * 6 4 2 9 9 H 1.48503 * 109.46977 * 269.72140 * 8 6 4 10 10 H 1.48494 * 109.47426 * 29.72351 * 8 6 4 11 11 H 1.48498 * 109.47266 * 149.72469 * 8 6 4 12 12 N 1.46493 * 109.47036 * 120.00566 * 2 1 3 13 13 C 1.46500 * 120.00550 * 59.99845 * 12 2 1 14 14 C 1.34784 * 119.99873 * 239.99610 * 12 2 1 15 15 O 1.21366 * 119.99497 * 5.51709 * 14 12 2 16 16 C 1.49349 * 120.00384 * 185.51678 * 14 12 2 17 17 O 1.21380 * 119.99783 * 5.75886 * 16 14 12 18 18 N 1.34777 * 120.00445 * 185.75744 * 16 14 12 19 19 C 1.39748 * 120.00392 * 184.57433 * 18 16 14 20 20 C 1.38947 * 120.49487 * 144.51706 * 19 18 16 21 21 N 1.31780 * 120.65103 * 179.67869 * 20 19 18 22 22 C 1.31887 * 121.80410 * 0.63665 * 21 20 19 23 23 C 1.38242 * 120.93369 * 359.65286 * 22 21 20 24 24 C 1.50696 * 120.38170 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.47144 * 269.98103 * 24 23 22 26 26 F 1.39900 * 109.47137 * 29.98034 * 24 23 22 27 27 F 1.39895 * 109.47171 * 149.98091 * 24 23 22 28 28 C 1.38532 * 119.24215 * 0.02743 * 23 22 21 29 29 H 1.08994 * 109.47633 * 54.44511 * 1 2 3 30 30 H 1.09001 * 109.47622 * 174.44985 * 1 2 3 31 31 H 1.09009 * 109.46872 * 294.44691 * 1 2 3 32 32 H 0.96998 * 119.99750 * 355.25329 * 7 6 4 33 33 H 1.08998 * 109.47264 * 95.58746 * 13 12 2 34 34 H 1.09006 * 109.47001 * 215.59407 * 13 12 2 35 35 H 1.08995 * 109.46681 * 335.58567 * 13 12 2 36 36 H 0.96998 * 119.99372 * 4.57325 * 18 16 14 37 37 H 1.07995 * 119.67270 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.53979 * 179.67538 * 22 21 20 39 39 H 1.07999 * 120.82274 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5806 -1.6357 -1.1338 6 6 1.7916 -0.1790 -2.4798 7 7 2.1297 -0.8530 -3.5574 8 14 0.9922 1.5015 -2.6418 9 1 -0.4831 1.3439 -2.7043 10 1 1.3517 2.3359 -1.4673 11 1 1.4726 2.1606 -3.8828 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 3.0042 1.1513 1.9445 16 6 3.3923 -0.7708 3.2371 17 8 3.2688 -1.9755 3.3194 18 7 4.0701 -0.0965 4.1871 19 6 4.7118 -0.7927 5.2149 20 6 5.9203 -0.3375 5.7276 21 7 6.5249 -0.9881 6.7011 22 6 6.0214 -2.0930 7.2162 23 6 4.8258 -2.6115 6.7550 24 6 4.2616 -3.8744 7.3530 25 9 4.7417 -4.9809 6.6442 26 9 4.6544 -3.9722 8.6922 27 9 2.8650 -3.8426 7.2778 28 6 4.1522 -1.9568 5.7368 29 1 -0.3634 0.5975 -0.8360 30 1 -0.3634 -1.0228 -0.0994 31 1 -0.3633 0.4253 0.9356 32 1 2.6101 -1.6916 -3.4740 33 1 2.4642 -2.7355 1.0592 34 1 1.5265 -2.2614 2.4960 35 1 0.7392 -2.3263 0.9010 36 1 4.1126 0.8721 4.1573 37 1 6.3658 0.5615 5.3280 38 1 6.5505 -2.5997 8.0098 39 1 3.2161 -2.3391 5.3574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338070563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:03 Heat of formation + Delta-G solvation = -161.676477 kcal Electronic energy + Delta-G solvation = -30193.433626 eV Core-core repulsion = 25301.364577 eV Total energy + Delta-G solvation = -4892.069049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.49659 -48.02250 -47.93941 -41.51614 -40.23379 -38.45863 -36.33493 -35.29180 -33.52650 -32.87258 -30.87238 -30.41163 -26.85889 -26.62857 -25.60474 -24.82216 -23.92923 -22.68403 -21.06046 -19.67172 -18.93996 -18.82038 -18.74345 -17.79912 -17.54914 -17.46969 -16.97732 -16.58830 -16.14753 -15.78307 -15.23810 -14.88457 -14.73872 -14.51428 -14.39898 -14.19103 -14.11330 -14.09456 -13.94684 -13.67695 -13.40571 -13.31495 -12.96352 -12.73546 -12.64758 -12.18907 -11.93585 -11.81756 -11.52302 -11.40695 -11.06739 -10.66453 -10.48472 -10.28455 -10.13995 -9.84928 -9.22569 -9.06116 -8.92155 -8.61773 -8.09948 -6.59409 -4.29438 0.16476 0.55357 1.50510 2.14702 2.29332 3.00874 3.24678 3.26705 3.35217 3.37642 3.49652 3.53602 3.71884 3.96251 4.04528 4.19812 4.32692 4.34058 4.41073 4.65721 4.72200 5.13668 5.31806 5.43615 5.53723 5.70272 5.95196 6.09095 6.09960 6.20471 6.29172 6.37672 6.63373 6.69671 6.88423 7.05384 7.24659 7.46865 7.60869 7.93407 8.19048 8.26234 8.71801 9.41750 10.79231 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.002604 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.989328 B =10750.505783 C =11360.761260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.226 3.774 3 H 0.066 0.934 4 C -0.609 4.609 5 H 0.064 0.936 6 C 0.035 3.965 7 N -0.903 5.903 8 Si 1.049 2.951 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.544 5.544 13 C 0.085 3.915 14 C 0.497 3.503 15 O -0.534 6.534 16 C 0.511 3.489 17 O -0.494 6.494 18 N -0.647 5.647 19 C 0.101 3.899 20 C 0.114 3.886 21 N -0.459 5.459 22 C 0.133 3.867 23 C -0.220 4.220 24 C 0.518 3.482 25 F -0.171 7.171 26 F -0.174 7.174 27 F -0.173 7.173 28 C -0.031 4.031 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.269 0.731 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.429 0.571 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.901 -1.914 22.937 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.125 3.875 3 H 0.084 0.916 4 C -0.647 4.647 5 H 0.082 0.918 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.877 3.123 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.273 5.273 13 C -0.058 4.058 14 C 0.277 3.723 15 O -0.413 6.413 16 C 0.294 3.706 17 O -0.367 6.367 18 N -0.295 5.295 19 C 0.004 3.996 20 C -0.046 4.046 21 N -0.166 5.166 22 C -0.025 4.025 23 C -0.225 4.225 24 C 0.463 3.537 25 F -0.152 7.152 26 F -0.156 7.156 27 F -0.154 7.154 28 C -0.059 4.059 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.269 0.731 37 H 0.190 0.810 38 H 0.188 0.812 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.061 -0.781 22.011 22.397 hybrid contribution -0.231 -1.461 0.722 1.646 sum 3.831 -2.243 22.733 23.162 Atomic orbital electron populations 1.22422 0.98232 1.01635 0.99525 1.19656 0.90801 0.95280 0.81768 0.91620 1.22223 1.40810 1.10960 0.90691 0.91821 1.25722 0.96213 1.03558 0.91581 1.70819 1.36378 1.16266 1.30159 0.83951 0.76400 0.75578 0.76344 1.20732 1.19970 1.21201 1.47998 1.45209 1.12800 1.21342 1.21943 1.01422 0.81092 1.01340 1.19465 0.81971 0.87186 0.83647 1.90735 1.60975 1.14316 1.75225 1.21007 0.78677 0.87690 0.83192 1.90735 1.55626 1.14177 1.76178 1.43158 1.51107 1.11828 1.23415 1.18696 0.93900 0.95341 0.91709 1.23052 0.88975 0.99864 0.92678 1.67894 1.32235 1.07015 1.09428 1.22615 0.91019 0.91472 0.97367 1.20963 1.00688 0.98112 1.02691 1.17974 0.75927 0.83861 0.75951 1.93262 1.87918 1.55727 1.78320 1.93201 1.90669 1.96604 1.35103 1.93221 1.29538 1.96659 1.95996 1.21580 0.99975 0.93373 0.90961 0.92372 0.92442 0.94761 0.92051 0.92324 0.90801 0.90822 0.73149 0.80961 0.81231 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.66 37.16 0.32 -2.90 16 2 C 0.23 5.17 2.20 -69.09 -0.15 5.02 16 3 H 0.07 1.62 5.39 -51.93 -0.28 1.34 16 4 C -0.61 -16.21 8.76 -34.44 -0.30 -16.51 16 5 H 0.06 1.83 7.79 -52.49 -0.41 1.42 16 6 C 0.04 0.97 5.43 -17.82 -0.10 0.88 16 7 N -0.90 -26.72 13.70 55.43 0.76 -25.96 16 8 Si 1.05 24.33 25.32 -169.99 -4.30 20.03 16 9 H -0.28 -6.07 6.81 56.52 0.38 -5.69 16 10 H -0.27 -6.04 6.35 56.52 0.36 -5.69 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.54 -10.88 2.75 -175.82 -0.48 -11.36 16 13 C 0.08 1.48 8.37 59.85 0.50 1.98 16 14 C 0.50 9.17 7.72 -11.63 -0.09 9.08 16 15 O -0.53 -10.74 15.84 5.48 0.09 -10.65 16 16 C 0.51 7.62 7.56 -11.63 -0.09 7.53 16 17 O -0.49 -7.81 10.88 5.47 0.06 -7.75 16 18 N -0.65 -7.30 5.33 -10.20 -0.05 -7.36 16 19 C 0.10 1.06 6.31 -83.59 -0.53 0.53 16 20 C 0.11 1.02 11.13 -17.31 -0.19 0.83 16 21 N -0.46 -4.44 10.35 -13.07 -0.14 -4.58 16 22 C 0.13 1.18 10.56 -17.53 -0.19 1.00 16 23 C -0.22 -2.16 5.46 -104.51 -0.57 -2.73 16 24 C 0.52 5.04 3.38 36.00 0.12 5.16 16 25 F -0.17 -1.84 17.30 2.25 0.04 -1.80 16 26 F -0.17 -1.54 16.48 2.25 0.04 -1.50 16 27 F -0.17 -1.82 16.53 2.25 0.04 -1.79 16 28 C -0.03 -0.34 8.15 -39.08 -0.32 -0.66 16 29 H 0.06 1.19 4.46 -51.93 -0.23 0.95 16 30 H 0.06 1.11 6.89 -51.93 -0.36 0.75 16 31 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.27 7.96 8.72 -40.82 -0.36 7.60 16 33 H 0.06 1.07 8.09 -51.93 -0.42 0.65 16 34 H 0.07 1.13 5.98 -51.93 -0.31 0.82 16 35 H 0.07 1.25 6.55 -51.93 -0.34 0.91 16 36 H 0.43 4.02 8.33 -40.82 -0.34 3.68 16 37 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.17 1.08 7.60 -52.48 -0.40 0.68 16 39 H 0.16 1.96 5.97 -52.49 -0.31 1.65 16 LS Contribution 340.42 15.07 5.13 5.13 Total: -1.00 -30.90 340.42 -3.87 -34.76 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.46 Total: 3.65 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -1.58 Total: 9.19 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.09 Total: -49.26 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.15 Total: -18.40 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.11 Total: -5.09 kcal Atomic # 14 Polarization: 24.33 SS G_CDS: -4.30 Total: 20.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.90 -3.87 -34.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338070563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.915 kcal (2) G-P(sol) polarization free energy of solvation -30.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds