Wall clock time and date at job start Wed Apr 1 2020 02:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47344 * 2 1 4 4 C 1.50699 * 109.46617 * 240.00134 * 2 1 3 5 5 H 1.07998 * 120.00066 * 245.30143 * 4 2 1 6 6 C 1.37879 * 120.00233 * 65.30117 * 4 2 1 7 7 N 1.31517 * 120.00108 * 185.72665 * 6 4 2 8 8 Si 1.86799 * 119.99723 * 6.00401 * 6 4 2 9 9 H 1.48503 * 109.46977 * 269.72140 * 8 6 4 10 10 H 1.48494 * 109.47426 * 29.72351 * 8 6 4 11 11 H 1.48498 * 109.47266 * 149.72469 * 8 6 4 12 12 N 1.46493 * 109.47036 * 120.00566 * 2 1 3 13 13 C 1.46500 * 120.00550 * 59.99845 * 12 2 1 14 14 C 1.34784 * 119.99873 * 239.99610 * 12 2 1 15 15 O 1.21366 * 119.99497 * 5.51709 * 14 12 2 16 16 C 1.49349 * 120.00384 * 185.51678 * 14 12 2 17 17 O 1.21380 * 119.99783 * 5.75886 * 16 14 12 18 18 N 1.34777 * 120.00445 * 185.75744 * 16 14 12 19 19 C 1.39748 * 120.00392 * 184.57433 * 18 16 14 20 20 C 1.38947 * 120.49487 * 144.51706 * 19 18 16 21 21 N 1.31780 * 120.65103 * 179.67869 * 20 19 18 22 22 C 1.31887 * 121.80410 * 0.63665 * 21 20 19 23 23 C 1.38242 * 120.93369 * 359.65286 * 22 21 20 24 24 C 1.50696 * 120.38170 * 180.02562 * 23 22 21 25 25 F 1.39906 * 109.47144 * 269.98103 * 24 23 22 26 26 F 1.39900 * 109.47137 * 29.98034 * 24 23 22 27 27 F 1.39895 * 109.47171 * 149.98091 * 24 23 22 28 28 C 1.38532 * 119.24215 * 0.02743 * 23 22 21 29 29 H 1.08994 * 109.47633 * 54.44511 * 1 2 3 30 30 H 1.09001 * 109.47622 * 174.44985 * 1 2 3 31 31 H 1.09009 * 109.46872 * 294.44691 * 1 2 3 32 32 H 0.96998 * 119.99750 * 355.25329 * 7 6 4 33 33 H 1.08998 * 109.47264 * 95.58746 * 13 12 2 34 34 H 1.09006 * 109.47001 * 215.59407 * 13 12 2 35 35 H 1.08995 * 109.46681 * 335.58567 * 13 12 2 36 36 H 0.96998 * 119.99372 * 4.57325 * 18 16 14 37 37 H 1.07995 * 119.67270 * 0.02562 * 20 19 18 38 38 H 1.08004 * 119.53979 * 179.67538 * 22 21 20 39 39 H 1.07999 * 120.82274 * 180.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5806 -1.6357 -1.1338 6 6 1.7916 -0.1790 -2.4798 7 7 2.1297 -0.8530 -3.5574 8 14 0.9922 1.5015 -2.6418 9 1 -0.4831 1.3439 -2.7043 10 1 1.3517 2.3359 -1.4673 11 1 1.4726 2.1606 -3.8828 12 7 2.0183 -0.6907 1.1961 13 6 1.6644 -2.0933 1.4279 14 6 2.7933 -0.0358 2.0833 15 8 3.0042 1.1513 1.9445 16 6 3.3923 -0.7708 3.2371 17 8 3.2688 -1.9755 3.3194 18 7 4.0701 -0.0965 4.1871 19 6 4.7118 -0.7927 5.2149 20 6 5.9203 -0.3375 5.7276 21 7 6.5249 -0.9881 6.7011 22 6 6.0214 -2.0930 7.2162 23 6 4.8258 -2.6115 6.7550 24 6 4.2616 -3.8744 7.3530 25 9 4.7417 -4.9809 6.6442 26 9 4.6544 -3.9722 8.6922 27 9 2.8650 -3.8426 7.2778 28 6 4.1522 -1.9568 5.7368 29 1 -0.3634 0.5975 -0.8360 30 1 -0.3634 -1.0228 -0.0994 31 1 -0.3633 0.4253 0.9356 32 1 2.6101 -1.6916 -3.4740 33 1 2.4642 -2.7355 1.0592 34 1 1.5265 -2.2614 2.4960 35 1 0.7392 -2.3263 0.9010 36 1 4.1126 0.8721 4.1573 37 1 6.3658 0.5615 5.3280 38 1 6.5505 -2.5997 8.0098 39 1 3.2161 -2.3391 5.3574 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338070563.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:03 Heat of formation + Delta-G solvation = -183.274667 kcal Electronic energy + Delta-G solvation = -30194.370193 eV Core-core repulsion = 25301.364577 eV Total energy + Delta-G solvation = -4893.005617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.27836 -48.78999 -48.74334 -42.54614 -41.32443 -39.78009 -37.78281 -36.51027 -34.81904 -34.29098 -32.24400 -31.69059 -28.05924 -27.62351 -27.01669 -26.52163 -24.91909 -23.63465 -22.39748 -21.01654 -19.92521 -19.67616 -19.60965 -19.59350 -18.82686 -18.42693 -18.06109 -17.55870 -17.40020 -17.08829 -16.49710 -15.86998 -15.67316 -15.57828 -15.44308 -15.18369 -15.15930 -15.01680 -14.92658 -14.88599 -14.67001 -14.47367 -14.36136 -14.10647 -13.89788 -13.56146 -13.49195 -13.27360 -13.19942 -12.60038 -12.40299 -12.27765 -11.88730 -11.64641 -11.26613 -11.13229 -11.03817 -10.70074 -10.51106 -9.85063 -9.71634 -8.76583 -6.48965 -0.60585 -0.30548 0.29526 1.04058 1.42257 1.46013 1.54117 1.68921 1.92221 2.30356 2.32542 2.42484 2.52720 2.84801 3.02135 3.11964 3.26855 3.30227 3.46487 3.55535 3.83120 3.98926 4.25549 4.42374 4.47566 4.57126 4.61611 4.65396 4.68178 4.74037 4.91213 5.00058 5.20169 5.27630 5.42086 5.65110 5.73409 5.95655 6.25470 6.43012 6.48198 6.53651 6.80622 7.30983 8.58933 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.020767 B = 0.002604 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.989328 B =10750.505783 C =11360.761260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.227 3.773 3 H 0.052 0.948 4 C -0.604 4.604 5 H 0.028 0.972 6 C -0.014 4.014 7 N -0.936 5.936 8 Si 1.083 2.917 9 H -0.251 1.251 10 H -0.256 1.256 11 H -0.291 1.291 12 N -0.559 5.559 13 C 0.092 3.908 14 C 0.494 3.506 15 O -0.551 6.551 16 C 0.520 3.480 17 O -0.507 6.507 18 N -0.626 5.626 19 C 0.084 3.916 20 C 0.129 3.871 21 N -0.469 5.469 22 C 0.143 3.857 23 C -0.226 4.226 24 C 0.522 3.478 25 F -0.178 7.178 26 F -0.167 7.167 27 F -0.179 7.179 28 C -0.039 4.039 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.254 0.746 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.439 0.561 37 H 0.202 0.798 38 H 0.196 0.804 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.848 -0.729 25.288 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.124 3.876 3 H 0.069 0.931 4 C -0.643 4.643 5 H 0.046 0.954 6 C -0.213 4.213 7 N -0.572 5.572 8 Si 0.905 3.095 9 H -0.176 1.176 10 H -0.181 1.181 11 H -0.217 1.217 12 N -0.289 5.289 13 C -0.051 4.051 14 C 0.276 3.724 15 O -0.431 6.431 16 C 0.302 3.698 17 O -0.381 6.381 18 N -0.275 5.275 19 C -0.012 4.012 20 C -0.030 4.030 21 N -0.177 5.177 22 C -0.014 4.014 23 C -0.230 4.230 24 C 0.467 3.533 25 F -0.160 7.160 26 F -0.149 7.149 27 F -0.160 7.160 28 C -0.067 4.067 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.281 0.719 37 H 0.219 0.781 38 H 0.212 0.788 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.025 0.394 24.431 24.763 hybrid contribution -0.074 -1.893 0.132 1.899 sum 3.951 -1.499 24.563 24.923 Atomic orbital electron populations 1.22293 0.95663 1.02240 1.01027 1.19387 0.92700 0.94020 0.81456 0.93065 1.22383 1.39542 1.09597 0.92734 0.95392 1.27072 0.96444 1.06308 0.91439 1.70943 1.38544 1.16374 1.31338 0.83547 0.77483 0.71782 0.76679 1.17579 1.18099 1.21749 1.47982 1.46129 1.13656 1.21114 1.21967 1.00747 0.79588 1.02749 1.20011 0.81049 0.87125 0.84256 1.90711 1.61198 1.15238 1.75959 1.20211 0.79350 0.87227 0.82981 1.90739 1.56587 1.14385 1.76394 1.42881 1.49905 1.12223 1.22510 1.18755 0.94774 0.95669 0.92011 1.23478 0.87896 1.00103 0.91543 1.68023 1.32382 1.07439 1.09824 1.23051 0.90342 0.90924 0.97086 1.20955 1.01124 0.98159 1.02744 1.17935 0.75605 0.83640 0.76147 1.93249 1.87974 1.56162 1.78573 1.93214 1.90549 1.96566 1.34531 1.93208 1.30106 1.96667 1.96051 1.21571 0.99854 0.93793 0.91491 0.92420 0.92069 0.91938 0.93727 0.93984 0.88466 0.90653 0.71943 0.78147 0.78750 0.82980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 8.66 71.98 0.62 -5.28 16 2 C 0.23 10.24 2.20 44.25 0.10 10.34 16 3 H 0.05 2.48 5.39 -2.39 -0.01 2.47 16 4 C -0.60 -32.84 8.76 25.60 0.22 -32.62 16 5 H 0.03 1.68 7.79 -2.91 -0.02 1.65 16 6 C -0.01 -0.77 5.43 84.65 0.46 -0.31 16 7 N -0.94 -57.05 13.70 21.45 0.29 -56.76 16 8 Si 1.08 48.28 25.32 68.60 1.74 50.02 16 9 H -0.25 -9.97 6.81 99.48 0.68 -9.29 16 10 H -0.26 -10.62 6.35 99.48 0.63 -9.99 16 11 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 12 N -0.56 -22.12 2.75 -828.51 -2.28 -24.40 16 13 C 0.09 3.17 8.37 127.77 1.07 4.24 16 14 C 0.49 17.83 7.72 87.24 0.67 18.50 16 15 O -0.55 -21.63 15.84 -3.30 -0.05 -21.68 16 16 C 0.52 14.91 7.56 87.24 0.66 15.57 16 17 O -0.51 -15.60 10.88 -3.34 -0.04 -15.63 16 18 N -0.63 -13.01 5.33 -304.52 -1.62 -14.63 16 19 C 0.08 1.59 6.31 38.30 0.24 1.84 16 20 C 0.13 1.95 11.13 84.87 0.94 2.89 16 21 N -0.47 -7.73 10.35 -195.27 -2.02 -9.76 16 22 C 0.14 2.17 10.56 84.69 0.89 3.06 16 23 C -0.23 -4.03 5.46 -19.79 -0.11 -4.14 16 24 C 0.52 9.43 3.38 71.23 0.24 9.67 16 25 F -0.18 -3.65 17.30 44.97 0.78 -2.87 16 26 F -0.17 -2.64 16.48 44.97 0.74 -1.90 16 27 F -0.18 -3.62 16.53 44.97 0.74 -2.87 16 28 C -0.04 -0.81 8.15 22.60 0.18 -0.63 16 29 H 0.06 2.20 4.46 -2.39 -0.01 2.19 16 30 H 0.06 2.27 6.89 -2.39 -0.02 2.25 16 31 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.25 15.72 8.72 -92.71 -0.81 14.91 16 33 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.10 2.89 5.98 -2.38 -0.01 2.88 16 35 H 0.07 2.53 6.55 -2.39 -0.02 2.52 16 36 H 0.44 7.29 8.33 -92.71 -0.77 6.52 16 37 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 38 H 0.20 1.86 7.60 -2.91 -0.02 1.84 16 39 H 0.15 3.53 5.97 -2.91 -0.02 3.51 16 Total: -1.00 -67.75 340.42 4.73 -63.03 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.24 Total: 14.33 kcal Atomic # 6 Polarization: 16.93 SS G_CDS: 6.20 Total: 23.14 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -5.63 Total: -105.54 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -0.09 Total: -37.31 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 2.26 Total: -7.65 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.74 Total: 50.02 kcal Total: -67.75 4.73 -63.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338070563.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.250 kcal (2) G-P(sol) polarization free energy of solvation -67.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds