Wall clock time and date at job start Wed Apr 1 2020 02:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.20824 * 119.99775 * 240.00306 * 12 2 1 14 14 O 1.34231 * 120.00026 * 60.00282 * 12 2 1 15 15 C 1.45196 * 116.99766 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.47043 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99837 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00154 * 179.97438 * 16 15 14 19 19 N 1.40096 * 119.99926 * 180.02562 * 18 16 15 20 20 C 1.34778 * 119.99926 * 179.97438 * 19 18 16 21 21 O 1.21548 * 119.99910 * 0.02562 * 20 19 18 22 22 C 1.47867 * 120.00113 * 179.97438 * 20 19 18 23 23 C 1.39703 * 120.06859 * 359.73388 * 22 20 19 24 24 C 1.38062 * 120.15257 * 179.69265 * 23 22 20 25 25 C 1.38087 * 120.30784 * 0.60095 * 24 23 22 26 26 C 1.39714 * 120.13471 * 359.67443 * 25 24 23 27 27 C 1.43201 * 120.07336 * 180.02562 * 26 25 24 28 28 N 9.54336 * 162.85449 * 179.97438 * 16 1 2 29 29 C 1.39291 * 120.06937 * 179.97438 * 22 20 19 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47138 * 299.99837 * 15 14 12 35 35 H 1.09004 * 109.47557 * 59.99945 * 15 14 12 36 36 H 0.97000 * 119.99838 * 0.02562 * 18 16 15 37 37 H 0.97000 * 120.00235 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.92205 * 359.97389 * 23 22 20 39 39 H 1.08010 * 119.84194 * 180.27759 * 24 23 22 40 40 H 1.07993 * 119.93031 * 179.70125 * 25 24 23 41 41 H 1.07994 * 120.15364 * 359.97438 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2267 -0.9864 -3.5896 16 6 1.7618 -0.3299 -4.8640 17 8 1.0626 0.6600 -4.8160 18 7 2.1239 -0.8421 -6.0569 19 7 1.6921 -0.2314 -7.2415 20 6 2.0546 -0.7433 -8.4344 21 8 2.7557 -1.7351 -8.4825 22 6 1.5985 -0.0991 -9.6848 23 6 0.7872 1.0370 -9.6313 24 6 0.3655 1.6436 -10.7977 25 6 0.7316 1.1256 -12.0243 26 6 1.5379 -0.0134 -12.0923 27 6 1.9172 -0.5490 -13.3650 28 7 2.2153 -0.9762 -14.3746 29 6 1.9727 -0.6266 -10.9184 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7090 1.1614 3.4844 34 1 3.3162 -0.9862 -3.5569 35 1 1.8624 -2.0133 -3.5566 36 1 2.6834 -1.6335 -6.0952 37 1 1.1330 0.5603 -7.2032 38 1 0.4929 1.4443 -8.6753 39 1 -0.2579 2.5243 -10.7504 40 1 0.3944 1.6022 -12.9327 41 1 2.5969 -1.5067 -10.9653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346788280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:39 Heat of formation + Delta-G solvation = -61.323644 kcal Electronic energy + Delta-G solvation = -27425.066095 eV Core-core repulsion = 23079.205411 eV Total energy + Delta-G solvation = -4345.860683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17793 -40.22618 -39.54893 -38.79997 -36.96208 -36.01805 -35.56272 -33.94610 -33.09281 -31.99281 -31.41574 -30.66314 -28.24985 -25.23632 -24.97961 -24.34916 -23.12152 -22.05164 -21.53651 -19.97983 -19.79095 -18.37822 -17.66550 -17.10171 -16.83283 -16.55144 -16.49261 -16.04849 -15.80063 -15.75396 -15.56826 -15.08131 -14.77605 -14.61260 -14.48608 -14.45160 -13.77793 -13.69556 -13.39557 -13.06704 -12.90619 -12.70281 -12.59803 -12.22488 -12.09185 -11.73721 -11.57702 -11.07740 -10.86519 -10.86287 -10.73327 -10.43618 -10.31398 -10.29149 -10.09782 -9.88170 -9.78438 -9.28228 -9.09571 -8.83097 -8.48178 -6.13704 -4.20049 -0.15675 0.24951 1.16473 1.83502 2.07206 2.20836 2.58667 3.02380 3.14519 3.19581 3.20213 3.30668 3.33831 3.38766 3.61960 3.95982 4.05919 4.21489 4.26175 4.38792 4.45169 4.59472 4.76596 5.06409 5.09517 5.09724 5.19679 5.33972 5.43708 5.46958 5.85651 5.88317 6.11544 6.23731 6.64177 6.82289 6.83485 6.87578 6.99481 7.05217 7.36316 7.39244 7.70819 7.88029 7.90970 8.08877 8.68450 8.87773 9.45695 10.93473 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.001524 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.384940 B =18366.952068 C =19004.903392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.061 3.939 3 H 0.067 0.933 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.906 3.094 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.469 3.531 13 O -0.514 6.514 14 O -0.341 6.341 15 C 0.055 3.945 16 C 0.520 3.480 17 O -0.510 6.510 18 N -0.524 5.524 19 N -0.512 5.512 20 C 0.561 3.439 21 O -0.530 6.530 22 C -0.126 4.126 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.042 4.042 26 C -0.033 4.033 27 C 0.252 3.748 28 N -0.406 5.406 29 C -0.007 4.007 30 H 0.097 0.903 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.435 0.565 37 H 0.433 0.567 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 2.694 -27.243 27.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.734 3.266 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.313 3.687 13 O -0.400 6.400 14 O -0.258 6.258 15 C -0.024 4.024 16 C 0.306 3.694 17 O -0.381 6.381 18 N -0.276 5.276 19 N -0.260 5.260 20 C 0.348 3.652 21 O -0.406 6.406 22 C -0.130 4.130 23 C -0.075 4.075 24 C -0.139 4.139 25 C -0.062 4.062 26 C -0.036 4.036 27 C -0.064 4.064 28 N -0.081 5.081 29 C -0.029 4.029 30 H 0.115 0.885 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.277 0.723 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.603 1.859 -28.592 28.697 hybrid contribution 0.285 -0.389 1.117 1.217 sum -1.318 1.470 -27.475 27.546 Atomic orbital electron populations 1.21750 0.95374 1.00126 1.02010 1.18808 0.95041 0.97087 0.84869 0.91500 1.21082 1.32267 1.13379 0.88690 0.90615 1.24933 0.94838 0.94990 0.99122 1.69876 1.36257 1.22665 1.24053 0.86417 0.79277 0.79650 0.81284 1.20074 1.21196 1.20075 1.25623 0.76468 0.83288 0.83308 1.90516 1.36395 1.26679 1.86423 1.86738 1.70060 1.54739 1.14293 1.22219 1.00812 0.96326 0.83080 1.20631 0.80701 0.84907 0.83145 1.90776 1.36201 1.24811 1.86361 1.44769 1.54815 1.31732 0.96302 1.44621 1.53356 1.31057 0.97007 1.18182 0.80754 0.84250 0.81971 1.90847 1.37733 1.25360 1.86677 1.19430 1.03035 0.98337 0.92218 1.21671 0.93152 0.92789 0.99892 1.21119 1.00752 1.00914 0.91089 1.21479 0.92919 0.92542 0.99309 1.15846 1.03256 0.98026 0.86470 1.25517 0.94040 0.93965 0.92832 1.81308 1.08024 1.07751 1.11011 1.21254 0.94631 0.97894 0.89102 0.88476 0.95481 0.94948 0.92562 0.87903 0.87924 0.72196 0.72349 0.84395 0.83623 0.84101 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 2 C 0.06 1.51 2.74 -92.92 -0.25 1.25 16 3 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 4 C -0.52 -14.07 8.37 -34.44 -0.29 -14.36 16 5 H 0.08 2.13 6.76 -52.49 -0.35 1.78 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 12 C 0.47 10.41 7.25 36.01 0.26 10.67 16 13 O -0.51 -12.09 15.21 -18.75 -0.29 -12.37 16 14 O -0.34 -6.47 9.66 -45.90 -0.44 -6.91 16 15 C 0.05 0.74 5.94 36.01 0.21 0.96 16 16 C 0.52 6.46 8.03 -10.98 -0.09 6.37 16 17 O -0.51 -8.02 16.34 -14.11 -0.23 -8.25 16 18 N -0.52 -4.94 6.26 31.22 0.20 -4.75 16 19 N -0.51 -4.15 6.21 30.53 0.19 -3.96 16 20 C 0.56 4.57 7.89 -12.32 -0.10 4.47 16 21 O -0.53 -5.89 16.18 5.32 0.09 -5.80 16 22 C -0.13 -0.69 5.87 -105.02 -0.62 -1.30 16 23 C -0.06 -0.17 9.54 -39.10 -0.37 -0.55 16 24 C -0.12 -0.23 10.02 -39.70 -0.40 -0.62 16 25 C -0.04 -0.10 9.75 -39.09 -0.38 -0.49 16 26 C -0.03 -0.15 5.73 -106.99 -0.61 -0.76 16 27 C 0.25 1.74 15.32 -22.47 -0.34 1.40 16 28 N -0.41 -3.91 18.54 41.84 0.78 -3.14 16 29 C -0.01 -0.04 9.30 -38.76 -0.36 -0.40 16 30 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.56 8.11 -51.93 -0.42 0.14 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 35 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 36 H 0.44 3.46 8.00 -182.60 -1.46 2.00 16 37 H 0.43 2.89 6.02 -182.60 -1.10 1.79 16 38 H 0.14 0.21 6.39 -52.49 -0.34 -0.12 16 39 H 0.15 -0.06 8.06 -52.48 -0.42 -0.48 16 40 H 0.14 0.08 8.06 -52.49 -0.42 -0.34 16 41 H 0.15 0.86 7.64 -52.49 -0.40 0.46 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -35.13 376.49 -7.59 -42.72 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.06 Total: -0.96 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.10 Total: 5.44 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 1.79 Total: -35.51 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.87 Total: -33.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.13 -7.59 -42.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346788280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.605 kcal (2) G-P(sol) polarization free energy of solvation -35.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds