Wall clock time and date at job start Wed Apr 1 2020 02:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31519 * 119.99723 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99900 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47112 * 60.00201 * 8 6 4 10 10 H 1.48503 * 109.47000 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.46939 * 299.99464 * 8 6 4 12 12 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 13 13 O 1.20824 * 119.99775 * 240.00306 * 12 2 1 14 14 O 1.34231 * 120.00026 * 60.00282 * 12 2 1 15 15 C 1.45196 * 116.99766 * 180.02562 * 14 12 2 16 16 C 1.50701 * 109.47043 * 179.97438 * 15 14 12 17 17 O 1.21286 * 119.99837 * 0.02562 * 16 15 14 18 18 N 1.34778 * 120.00154 * 179.97438 * 16 15 14 19 19 N 1.40096 * 119.99926 * 180.02562 * 18 16 15 20 20 C 1.34778 * 119.99926 * 179.97438 * 19 18 16 21 21 O 1.21548 * 119.99910 * 0.02562 * 20 19 18 22 22 C 1.47867 * 120.00113 * 179.97438 * 20 19 18 23 23 C 1.39703 * 120.06859 * 359.73388 * 22 20 19 24 24 C 1.38062 * 120.15257 * 179.69265 * 23 22 20 25 25 C 1.38087 * 120.30784 * 0.60095 * 24 23 22 26 26 C 1.39714 * 120.13471 * 359.67443 * 25 24 23 27 27 C 1.43201 * 120.07336 * 180.02562 * 26 25 24 28 28 N 9.54336 * 162.85449 * 179.97438 * 16 1 2 29 29 C 1.39291 * 120.06937 * 179.97438 * 22 20 19 30 30 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 31 31 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 32 32 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 33 33 H 0.97003 * 119.99231 * 179.97438 * 7 6 4 34 34 H 1.08999 * 109.47138 * 299.99837 * 15 14 12 35 35 H 1.09004 * 109.47557 * 59.99945 * 15 14 12 36 36 H 0.97000 * 119.99838 * 0.02562 * 18 16 15 37 37 H 0.97000 * 120.00235 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.92205 * 359.97389 * 23 22 20 39 39 H 1.08010 * 119.84194 * 180.27759 * 24 23 22 40 40 H 1.07993 * 119.93031 * 179.70125 * 25 24 23 41 41 H 1.07994 * 120.15364 * 359.97438 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.8063 -1.1210 4.0082 10 1 1.8270 -0.4199 5.2205 11 1 1.8257 -2.5202 4.0077 12 6 2.0323 -0.7104 -1.2305 13 8 2.7269 -1.6928 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2267 -0.9864 -3.5896 16 6 1.7618 -0.3299 -4.8640 17 8 1.0626 0.6600 -4.8160 18 7 2.1239 -0.8421 -6.0569 19 7 1.6921 -0.2314 -7.2415 20 6 2.0546 -0.7433 -8.4344 21 8 2.7557 -1.7351 -8.4825 22 6 1.5985 -0.0991 -9.6848 23 6 0.7872 1.0370 -9.6313 24 6 0.3655 1.6436 -10.7977 25 6 0.7316 1.1256 -12.0243 26 6 1.5379 -0.0134 -12.0923 27 6 1.9172 -0.5490 -13.3650 28 7 2.2153 -0.9762 -14.3746 29 6 1.9727 -0.6266 -10.9184 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 0.7090 1.1614 3.4844 34 1 3.3162 -0.9862 -3.5569 35 1 1.8624 -2.0133 -3.5566 36 1 2.6834 -1.6335 -6.0952 37 1 1.1330 0.5603 -7.2032 38 1 0.4929 1.4443 -8.6753 39 1 -0.2579 2.5243 -10.7504 40 1 0.3944 1.6022 -12.9327 41 1 2.5969 -1.5067 -10.9653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346788280.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:38 Heat of formation + Delta-G solvation = -83.789283 kcal Electronic energy + Delta-G solvation = -27426.040278 eV Core-core repulsion = 23079.205411 eV Total energy + Delta-G solvation = -4346.834867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92302 -41.43713 -40.55610 -39.56513 -37.54776 -37.45493 -36.57321 -35.90509 -33.74377 -32.72121 -32.30956 -31.95566 -29.34294 -27.24998 -25.45386 -25.05540 -24.56171 -22.80987 -22.23789 -21.63199 -20.42574 -19.22174 -18.60149 -18.53494 -17.89563 -17.76487 -17.48257 -17.31070 -16.84916 -16.65697 -16.38625 -16.16430 -15.85634 -15.64126 -15.14102 -15.10261 -14.89189 -14.71703 -14.27737 -14.22310 -13.95566 -13.79293 -13.42117 -13.36066 -12.95225 -12.90254 -12.76228 -12.61099 -12.58715 -12.41366 -12.27426 -12.02781 -11.80091 -11.61847 -11.34304 -11.08937 -11.05794 -10.50820 -10.23175 -10.10464 -9.61365 -8.17132 -6.30778 -0.48907 -0.11460 0.34592 1.11387 1.39626 1.46275 1.47836 1.51256 1.52488 1.55639 1.84164 2.01888 2.45446 2.66838 2.81487 2.83030 3.13398 3.22365 3.63433 3.80045 3.95815 4.00485 4.02606 4.05190 4.24569 4.29651 4.48630 4.71840 4.84319 4.92441 5.01085 5.02155 5.18112 5.23647 5.28361 5.31269 5.44918 5.52313 5.66966 5.70824 5.90246 6.11569 6.25558 6.36127 6.60956 6.75630 6.98853 7.07604 7.38200 8.89066 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038274 B = 0.001524 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.384940 B =18366.952068 C =19004.903392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.061 0.939 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.273 1.273 12 C 0.480 3.520 13 O -0.531 6.531 14 O -0.347 6.347 15 C 0.046 3.954 16 C 0.531 3.469 17 O -0.545 6.545 18 N -0.512 5.512 19 N -0.508 5.508 20 C 0.565 3.435 21 O -0.565 6.565 22 C -0.140 4.140 23 C -0.046 4.046 24 C -0.111 4.111 25 C -0.025 4.025 26 C -0.044 4.044 27 C 0.278 3.722 28 N -0.461 5.461 29 C -0.012 4.012 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.268 0.732 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.443 0.557 37 H 0.440 0.560 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.166 0.834 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 3.571 -27.972 28.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.031 3.969 3 H 0.069 0.931 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.198 1.198 12 C 0.325 3.675 13 O -0.420 6.420 14 O -0.263 6.263 15 C -0.033 4.033 16 C 0.317 3.683 17 O -0.420 6.420 18 N -0.262 5.262 19 N -0.258 5.258 20 C 0.354 3.646 21 O -0.443 6.443 22 C -0.144 4.144 23 C -0.065 4.065 24 C -0.129 4.129 25 C -0.046 4.046 26 C -0.047 4.047 27 C -0.037 4.037 28 N -0.137 5.137 29 C -0.034 4.034 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.288 0.712 37 H 0.286 0.714 38 H 0.174 0.826 39 H 0.197 0.803 40 H 0.183 0.817 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -2.408 2.738 -29.364 29.589 hybrid contribution 0.517 -0.611 1.214 1.454 sum -1.891 2.126 -28.150 28.293 Atomic orbital electron populations 1.21569 0.94434 1.00035 1.01904 1.18703 0.95903 0.96313 0.85977 0.93060 1.21242 1.32763 1.13412 0.90267 0.92055 1.25639 0.94875 0.95613 1.01589 1.69967 1.36595 1.23387 1.24783 0.85521 0.78721 0.78662 0.78217 1.19875 1.20189 1.19811 1.24844 0.76071 0.82640 0.83980 1.90497 1.37129 1.27326 1.87044 1.86622 1.69942 1.55201 1.14565 1.22625 1.02178 0.96874 0.81575 1.20254 0.80282 0.84302 0.83487 1.90767 1.38055 1.26358 1.86840 1.44521 1.53889 1.31507 0.96322 1.44752 1.53483 1.31290 0.96278 1.18628 0.79839 0.83675 0.82453 1.90830 1.39360 1.26982 1.87115 1.19228 1.04910 0.99706 0.90574 1.21935 0.91637 0.91454 1.01458 1.21489 1.00104 1.01333 0.89953 1.21817 0.90937 0.91000 1.00818 1.15848 1.04722 0.99227 0.84919 1.25826 0.92541 0.92615 0.92711 1.81326 1.10049 1.09549 1.12784 1.21156 0.94822 0.97806 0.89609 0.90443 0.93572 0.94920 0.92299 0.85831 0.85850 0.71217 0.71419 0.82609 0.80324 0.81652 0.84541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.65 8.90 71.98 0.64 -5.01 16 2 C 0.05 2.50 2.74 -12.29 -0.03 2.47 16 3 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 4 C -0.54 -29.67 8.37 25.60 0.21 -29.45 16 5 H 0.06 3.49 6.76 -2.91 -0.02 3.47 16 6 C 0.02 1.23 5.30 84.65 0.45 1.68 16 7 N -0.91 -49.70 11.32 21.45 0.24 -49.46 16 8 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 12 C 0.48 21.21 7.25 71.24 0.52 21.72 16 13 O -0.53 -24.84 15.21 21.97 0.33 -24.50 16 14 O -0.35 -12.86 9.66 -45.07 -0.44 -13.29 16 15 C 0.05 1.17 5.94 71.24 0.42 1.59 16 16 C 0.53 12.43 8.03 87.66 0.70 13.13 16 17 O -0.55 -16.50 16.34 15.75 0.26 -16.25 16 18 N -0.51 -8.91 6.26 -173.53 -1.09 -10.00 16 19 N -0.51 -7.49 6.21 -175.59 -1.09 -8.58 16 20 C 0.56 8.67 7.89 86.79 0.68 9.36 16 21 O -0.56 -12.47 16.18 -3.87 -0.06 -12.54 16 22 C -0.14 -1.32 5.87 -20.12 -0.12 -1.44 16 23 C -0.05 -0.15 9.54 22.58 0.22 0.07 16 24 C -0.11 0.04 10.02 22.19 0.22 0.26 16 25 C -0.03 -0.04 9.75 22.59 0.22 0.18 16 26 C -0.04 -0.34 5.73 -21.40 -0.12 -0.46 16 27 C 0.28 3.74 15.32 88.33 1.35 5.09 16 28 N -0.46 -9.07 18.54 19.00 0.35 -8.72 16 29 C -0.01 -0.12 9.30 22.80 0.21 0.09 16 30 H 0.08 3.91 6.07 -2.39 -0.01 3.90 16 31 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 34 H 0.12 2.67 8.13 -2.39 -0.02 2.65 16 35 H 0.12 2.67 8.13 -2.38 -0.02 2.65 16 36 H 0.44 6.45 8.00 -213.32 -1.71 4.74 16 37 H 0.44 5.02 6.02 -213.32 -1.29 3.74 16 38 H 0.16 -0.06 6.39 -2.91 -0.02 -0.08 16 39 H 0.18 -1.12 8.06 -2.91 -0.02 -1.14 16 40 H 0.17 -0.48 8.06 -2.91 -0.02 -0.50 16 41 H 0.14 1.69 7.64 -2.91 -0.02 1.67 16 Total: -1.00 -76.90 376.49 4.26 -72.64 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -1.86 Total: 6.60 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: 5.58 Total: 19.27 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.58 Total: -76.75 kcal Atomic # 8 Polarization: -66.67 SS G_CDS: 0.09 Total: -66.58 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -76.90 4.26 -72.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346788280.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.151 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds