Wall clock time and date at job start Wed Apr 1 2020 02:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47204 * 2 1 4 4 C 1.50703 * 109.46661 * 240.00320 * 2 1 3 5 5 H 1.07994 * 120.00350 * 239.99992 * 4 2 1 6 6 C 1.37881 * 119.99808 * 60.00204 * 4 2 1 7 7 N 1.31510 * 120.00352 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99992 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46910 * 89.99640 * 8 6 4 10 10 H 1.48489 * 109.47582 * 209.99947 * 8 6 4 11 11 H 1.48501 * 109.47294 * 330.00379 * 8 6 4 12 12 C 1.50695 * 109.47319 * 120.00812 * 2 1 3 13 13 O 1.20825 * 120.00224 * 119.99559 * 12 2 1 14 14 O 1.34232 * 119.99727 * 299.99634 * 12 2 1 15 15 C 1.45206 * 116.99878 * 180.02562 * 14 12 2 16 16 C 1.50699 * 109.47021 * 179.97438 * 15 14 12 17 17 O 1.21282 * 120.00041 * 0.02562 * 16 15 14 18 18 N 1.34779 * 120.00033 * 180.02562 * 16 15 14 19 19 N 1.40093 * 120.00065 * 180.02562 * 18 16 15 20 20 C 1.34779 * 120.00065 * 179.97438 * 19 18 16 21 21 O 1.21552 * 119.99758 * 359.97438 * 20 19 18 22 22 C 1.47864 * 120.00082 * 179.97438 * 20 19 18 23 23 C 1.39699 * 120.06813 * 359.72482 * 22 20 19 24 24 C 1.38062 * 120.15497 * 179.69336 * 23 22 20 25 25 C 1.38090 * 120.30312 * 0.60674 * 24 23 22 26 26 C 1.39710 * 120.14187 * 359.67148 * 25 24 23 27 27 C 1.43195 * 120.08455 * 180.02562 * 26 25 24 28 28 N 9.54338 * 162.86217 * 180.02562 * 16 1 2 29 29 C 1.39292 * 120.06989 * 179.97438 * 22 20 19 30 30 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46661 * 299.99381 * 1 2 3 32 32 H 1.08994 * 109.47049 * 59.99417 * 1 2 3 33 33 H 0.97001 * 120.00832 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47122 * 299.99817 * 15 14 12 35 35 H 1.09000 * 109.47070 * 59.99842 * 15 14 12 36 36 H 0.97004 * 119.99472 * 359.97438 * 18 16 15 37 37 H 0.96996 * 120.00084 * 359.97438 * 19 18 16 38 38 H 1.07992 * 119.92479 * 359.97438 * 23 22 20 39 39 H 1.07998 * 119.85017 * 180.27321 * 24 23 22 40 40 H 1.08003 * 119.93304 * 179.69679 * 25 24 23 41 41 H 1.07994 * 120.14906 * 359.97438 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.3444 -2.1612 -4.4125 10 1 2.4870 -0.1400 -5.1121 11 1 3.6305 -1.7565 -3.7123 12 6 2.0324 -0.7105 1.2303 13 8 2.7270 -1.6929 1.1193 14 8 1.7082 -0.2520 2.4495 15 6 2.2279 -0.9861 3.5895 16 6 1.7639 -0.3290 4.8639 17 8 1.0638 0.6602 4.8161 18 7 2.1270 -0.8406 6.0568 19 7 1.6952 -0.2301 7.2415 20 6 2.0579 -0.7420 8.4343 21 8 2.7592 -1.7337 8.4822 22 6 1.6027 -0.0973 9.6847 23 6 0.8014 1.0458 9.6313 24 6 0.3701 1.6456 10.7977 25 6 0.7372 1.1282 12.0243 26 6 1.5430 -0.0112 12.0923 27 6 1.9225 -0.5470 13.3649 28 7 2.2224 -0.9735 14.3744 29 6 1.9762 -0.6255 10.9184 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 0.7080 1.1612 -3.4843 34 1 1.8644 -2.0132 3.5567 35 1 3.3174 -0.9850 3.5563 36 1 2.6866 -1.6320 6.0949 37 1 1.1353 0.5610 7.2032 38 1 0.5149 1.4587 8.6755 39 1 -0.2528 2.5265 10.7507 40 1 0.4005 1.6050 12.9329 41 1 2.5984 -1.5069 10.9650 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346788281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:41 Heat of formation + Delta-G solvation = -61.384166 kcal Electronic energy + Delta-G solvation = -27425.122736 eV Core-core repulsion = 23079.259428 eV Total energy + Delta-G solvation = -4345.863308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17790 -40.22612 -39.54856 -38.79977 -36.95749 -36.01767 -35.56263 -33.94747 -33.09293 -31.99283 -31.41600 -30.66451 -28.24988 -25.23816 -24.97976 -24.34964 -23.12226 -22.05180 -21.53686 -19.97990 -19.79117 -18.37825 -17.66578 -17.10181 -16.83315 -16.55270 -16.49105 -16.04968 -15.80409 -15.75398 -15.56708 -15.08211 -14.77572 -14.61252 -14.48530 -14.44978 -13.77698 -13.69416 -13.39347 -13.06743 -12.90662 -12.70671 -12.59765 -12.22581 -12.09205 -11.73777 -11.58096 -11.09637 -10.86353 -10.84280 -10.72378 -10.44181 -10.31652 -10.29176 -10.09705 -9.88174 -9.78433 -9.28409 -9.08514 -8.83088 -8.48753 -6.13908 -4.20201 -0.15694 0.24910 1.16477 1.83461 2.07044 2.20822 2.58606 3.02395 3.14504 3.19715 3.20023 3.28388 3.34463 3.40559 3.61989 3.95988 4.05934 4.21497 4.26165 4.38764 4.45164 4.59452 4.76581 5.06411 5.09526 5.09731 5.19541 5.33963 5.43699 5.46940 5.85637 5.88299 6.11554 6.23723 6.64064 6.82237 6.83413 6.87563 6.99455 7.05199 7.36310 7.39176 7.70733 7.88041 7.90985 8.08744 8.68479 8.88023 9.45629 10.93301 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.038271 B = 0.001524 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.456716 B =18367.153667 C =19004.978642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 H 0.067 0.933 4 C -0.515 4.515 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.469 3.531 13 O -0.514 6.514 14 O -0.341 6.341 15 C 0.055 3.945 16 C 0.520 3.480 17 O -0.510 6.510 18 N -0.524 5.524 19 N -0.512 5.512 20 C 0.561 3.439 21 O -0.530 6.530 22 C -0.126 4.126 23 C -0.056 4.056 24 C -0.121 4.121 25 C -0.042 4.042 26 C -0.033 4.033 27 C 0.252 3.748 28 N -0.406 5.406 29 C -0.007 4.007 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.097 0.903 33 H 0.264 0.736 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.435 0.565 37 H 0.433 0.567 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.156 2.698 27.255 27.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.042 3.958 3 H 0.085 0.915 4 C -0.553 4.553 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.733 3.267 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.313 3.687 13 O -0.400 6.400 14 O -0.258 6.258 15 C -0.024 4.024 16 C 0.306 3.694 17 O -0.381 6.381 18 N -0.276 5.276 19 N -0.260 5.260 20 C 0.348 3.652 21 O -0.406 6.406 22 C -0.130 4.130 23 C -0.075 4.075 24 C -0.139 4.139 25 C -0.062 4.062 26 C -0.036 4.036 27 C -0.064 4.064 28 N -0.081 5.081 29 C -0.029 4.029 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.278 0.722 37 H 0.276 0.724 38 H 0.156 0.844 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.562 1.864 28.607 28.710 hybrid contribution 0.266 -0.383 -1.123 1.217 sum -1.296 1.480 27.483 27.554 Atomic orbital electron populations 1.21752 0.95372 1.00126 1.02011 1.18815 0.95045 0.97098 0.84891 0.91491 1.21124 1.32199 1.13345 0.88673 0.90558 1.24933 0.94858 0.94976 0.99135 1.69876 1.36317 1.22698 1.23961 0.86365 0.79433 0.79207 0.81707 1.20511 1.21117 1.19666 1.25619 0.76473 0.83290 0.83305 1.90517 1.36390 1.26675 1.86421 1.86740 1.70020 1.54781 1.14294 1.22221 1.00806 0.96332 0.83079 1.20629 0.80701 0.84906 0.83146 1.90775 1.36156 1.24856 1.86360 1.44770 1.54785 1.31764 0.96301 1.44620 1.53327 1.31085 0.97006 1.18183 0.80748 0.84256 0.81972 1.90848 1.37718 1.25374 1.86679 1.19428 1.03156 0.98217 0.92217 1.21668 0.93153 0.92788 0.99893 1.21117 1.00681 1.00986 0.91088 1.21481 0.92910 0.92548 0.99310 1.15844 1.03277 0.98004 0.86468 1.25524 0.94034 0.93967 0.92834 1.81319 1.08018 1.07758 1.11000 1.21256 0.94577 0.97944 0.89102 0.94951 0.95481 0.88472 0.92614 0.87913 0.87911 0.72195 0.72350 0.84396 0.83623 0.84100 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.90 37.16 0.33 -2.80 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 4 C -0.52 -14.05 8.37 -34.44 -0.29 -14.34 16 5 H 0.08 2.15 6.76 -52.49 -0.35 1.80 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.47 10.41 7.25 36.00 0.26 10.67 16 13 O -0.51 -12.09 15.21 -18.75 -0.29 -12.38 16 14 O -0.34 -6.47 9.66 -45.91 -0.44 -6.91 16 15 C 0.05 0.74 5.94 36.01 0.21 0.96 16 16 C 0.52 6.46 8.03 -10.99 -0.09 6.37 16 17 O -0.51 -8.02 16.34 -14.11 -0.23 -8.25 16 18 N -0.52 -4.94 6.26 31.22 0.20 -4.75 16 19 N -0.51 -4.15 6.21 30.53 0.19 -3.96 16 20 C 0.56 4.56 7.89 -12.32 -0.10 4.47 16 21 O -0.53 -5.89 16.18 5.32 0.09 -5.80 16 22 C -0.13 -0.69 5.87 -105.02 -0.62 -1.30 16 23 C -0.06 -0.17 9.54 -39.10 -0.37 -0.55 16 24 C -0.12 -0.23 10.02 -39.70 -0.40 -0.62 16 25 C -0.04 -0.10 9.75 -39.09 -0.38 -0.49 16 26 C -0.03 -0.15 5.73 -106.99 -0.61 -0.76 16 27 C 0.25 1.74 15.32 -22.47 -0.34 1.40 16 28 N -0.41 -3.91 18.54 41.85 0.78 -3.14 16 29 C -0.01 -0.04 9.30 -38.76 -0.36 -0.40 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.03 0.56 8.11 -51.92 -0.42 0.14 16 32 H 0.10 2.44 6.07 -51.93 -0.32 2.12 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.10 1.21 8.13 -51.93 -0.42 0.79 16 35 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 36 H 0.44 3.46 8.00 -182.60 -1.46 2.00 16 37 H 0.43 2.89 6.02 -182.61 -1.10 1.79 16 38 H 0.14 0.21 6.39 -52.49 -0.34 -0.12 16 39 H 0.15 -0.06 8.06 -52.49 -0.42 -0.48 16 40 H 0.14 0.08 8.06 -52.48 -0.42 -0.34 16 41 H 0.15 0.86 7.64 -52.49 -0.40 0.46 16 LS Contribution 376.49 15.07 5.67 5.67 Total: -1.00 -35.16 376.49 -7.59 -42.76 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.06 Total: -0.98 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: -3.10 Total: 5.44 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 1.79 Total: -35.51 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -0.87 Total: -33.34 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.16 -7.59 -42.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346788281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.629 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds