Wall clock time and date at job start Wed Apr 1 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34724 * 117.00279 * 2 1 4 4 O 1.21490 * 120.00124 * 359.97438 * 3 2 1 5 5 C 1.47576 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.41544 * 126.52719 * 180.02562 * 5 3 2 7 7 C 1.35353 * 105.50589 * 179.97438 * 6 5 3 8 8 N 1.35041 * 107.23660 * 0.25634 * 7 6 5 9 9 C 1.46505 * 124.87537 * 179.74250 * 8 7 6 10 10 C 1.50709 * 109.47042 * 125.00320 * 9 8 7 11 11 O 1.21293 * 119.99695 * 359.97438 * 10 9 8 12 12 N 1.34766 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.39993 * 120.00094 * 175.48858 * 12 10 9 14 14 C 1.38923 * 120.00556 * 214.85021 * 13 12 10 15 15 C 1.38001 * 119.99761 * 179.79303 * 14 13 12 16 16 C 1.38906 * 120.00429 * 0.45894 * 15 14 13 17 17 O 1.35776 * 120.00189 * 179.77270 * 16 15 14 18 18 C 1.34807 * 117.00194 * 185.36754 * 17 16 15 19 19 H 1.08002 * 120.00210 * 354.96219 * 18 17 16 20 20 C 1.38637 * 120.00095 * 174.96046 * 18 17 16 21 21 N 1.31571 * 120.00131 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46954 * 60.00193 * 22 20 18 24 24 H 1.48497 * 109.46951 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47266 * 300.00353 * 22 20 18 26 26 C 1.38910 * 120.00112 * 359.79154 * 16 15 14 27 27 C 1.38008 * 120.00073 * 359.97438 * 26 16 15 28 28 N 1.28471 * 110.24575 * 359.55317 * 8 7 6 29 29 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46943 * 300.00425 * 1 2 3 31 31 H 1.08996 * 109.46982 * 60.00061 * 1 2 3 32 32 H 1.08000 * 127.24768 * 359.94723 * 6 5 3 33 33 H 1.07999 * 126.37871 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47034 * 245.00226 * 9 8 7 35 35 H 1.09001 * 109.47256 * 5.00208 * 9 8 7 36 36 H 0.97005 * 120.00651 * 355.49451 * 12 10 9 37 37 H 1.08007 * 119.99794 * 0.02562 * 14 13 12 38 38 H 1.07997 * 119.99565 * 180.23158 * 15 14 13 39 39 H 0.96987 * 120.00392 * 179.97438 * 21 20 18 40 40 H 1.07996 * 119.99702 * 179.97438 * 26 16 15 41 41 H 1.08002 * 119.99793 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.3193 2.4575 -0.0001 7 6 5.6064 2.0388 -0.0004 8 7 5.5879 0.6885 -0.0067 9 6 6.7782 -0.1656 -0.0145 10 6 6.7148 -1.1261 1.1451 11 8 5.7687 -1.0995 1.9036 12 7 7.7094 -2.0146 1.3392 13 6 7.6981 -2.8424 2.4681 14 6 8.8929 -3.1944 3.0835 15 6 8.8813 -4.0069 4.1989 16 6 7.6758 -4.4806 4.7007 17 8 7.6648 -5.2837 5.7954 18 6 6.4750 -5.7986 6.1648 19 1 5.5743 -5.5023 5.6476 20 6 6.4074 -6.7086 7.2085 21 7 7.5046 -7.0701 7.8382 22 14 4.7586 -7.4216 7.7208 23 1 4.1546 -8.1459 6.5737 24 1 4.9565 -8.3636 8.8516 25 1 3.8540 -6.3225 8.1439 26 6 6.4815 -4.1329 4.0824 27 6 6.4925 -3.3164 2.9698 28 7 4.3766 0.2605 -0.0009 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9636 3.4773 -0.0001 33 1 6.4845 2.6674 0.0002 34 1 6.8173 -0.7258 -0.9486 35 1 7.6705 0.4540 0.0752 36 1 8.4332 -2.0806 0.6967 37 1 9.8305 -2.8290 2.6911 38 1 9.8099 -4.2774 4.6794 39 1 7.4574 -7.7064 8.5686 40 1 5.5443 -4.5016 4.4723 41 1 5.5640 -3.0465 2.4888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361335109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:08 Heat of formation + Delta-G solvation = -16.070812 kcal Electronic energy + Delta-G solvation = -28356.801966 eV Core-core repulsion = 24012.903593 eV Total energy + Delta-G solvation = -4343.898373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.01101 -40.36293 -40.11178 -38.72130 -36.65421 -36.53974 -34.18643 -33.83431 -32.22688 -31.09709 -30.27424 -29.51978 -28.11994 -27.14772 -25.31955 -24.03275 -22.55256 -22.01203 -21.51556 -20.65321 -20.20352 -18.41883 -18.09789 -17.80717 -17.46278 -17.12098 -16.67988 -16.55696 -16.10795 -15.94041 -15.20662 -14.54804 -14.32061 -14.20292 -13.98484 -13.93471 -13.63318 -13.60515 -13.43319 -13.33442 -12.94248 -12.86266 -12.54621 -12.29040 -11.78040 -11.63630 -11.59132 -11.10020 -11.03598 -10.95300 -10.92321 -10.81772 -10.47394 -10.12382 -9.79364 -9.51400 -9.40009 -9.22216 -8.74672 -8.27039 -7.02651 -6.47827 -4.05503 1.15421 1.70821 1.89372 1.94092 2.14616 2.57365 2.61374 2.96338 3.06814 3.14057 3.15102 3.17314 3.95736 3.98590 4.32202 4.43390 4.46877 4.50532 4.56153 4.92779 4.97495 5.01551 5.06268 5.20180 5.28828 5.34080 5.42644 5.59687 5.68555 5.98574 6.02318 6.09477 6.15780 6.24342 6.34184 6.64353 6.77176 6.92065 7.01205 7.25479 7.38595 7.40872 7.49971 7.69605 7.74959 7.97085 8.11975 8.97813 9.65755 10.69789 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002386 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.535487 B =11732.169860 C =13879.576767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.341 6.341 3 C 0.560 3.440 4 O -0.505 6.505 5 C -0.014 4.014 6 C -0.171 4.171 7 C -0.016 4.016 8 N -0.266 5.266 9 C 0.102 3.898 10 C 0.489 3.511 11 O -0.493 6.493 12 N -0.653 5.653 13 C 0.027 3.973 14 C -0.089 4.089 15 C -0.179 4.179 16 C 0.148 3.852 17 O -0.174 6.174 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.941 3.059 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.221 4.221 27 C -0.061 4.061 28 N -0.199 5.199 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.167 0.833 33 H 0.188 0.812 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.403 0.597 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.271 0.729 40 H 0.131 0.869 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.507 15.592 -19.613 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.256 6.256 3 C 0.403 3.597 4 O -0.391 6.391 5 C -0.172 4.172 6 C -0.198 4.198 7 C -0.157 4.157 8 N -0.056 5.056 9 C -0.022 4.022 10 C 0.273 3.727 11 O -0.365 6.365 12 N -0.299 5.299 13 C -0.065 4.065 14 C -0.109 4.109 15 C -0.199 4.199 16 C 0.094 3.906 17 O -0.077 6.077 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.765 3.235 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.241 4.241 27 C -0.081 4.081 28 N -0.037 5.037 29 H 0.122 0.878 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.184 0.816 33 H 0.205 0.795 34 H 0.144 0.856 35 H 0.154 0.846 36 H 0.238 0.762 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.078 14.467 -18.702 23.736 hybrid contribution -0.550 0.551 -0.019 0.779 sum -2.628 15.018 -18.722 24.144 Atomic orbital electron populations 1.23331 0.75863 1.04023 1.02547 1.86677 1.23433 1.31870 1.83650 1.19564 0.86311 0.81632 0.72201 1.90846 1.65562 1.36128 1.46570 1.20728 0.90993 0.91322 1.14169 1.21708 0.90879 0.99299 1.07952 1.22901 1.00193 0.84078 1.08517 1.45001 1.04707 1.05257 1.50644 1.21850 0.85359 0.94243 1.00774 1.20300 0.83928 0.81906 0.86605 1.90849 1.31450 1.69200 1.45049 1.42993 1.25906 1.36415 1.24617 1.17176 0.94517 1.01778 0.93007 1.20329 0.95620 0.99437 0.95551 1.19990 0.96385 1.04609 0.98948 1.19430 0.93170 0.90795 0.87216 1.83967 1.33792 1.53932 1.36015 1.21308 0.83867 1.24247 1.17368 0.89002 1.25291 0.99334 0.96066 0.95730 1.70027 1.27411 1.31047 1.21164 0.85777 0.80103 0.78998 0.78589 1.19413 1.20243 1.19405 1.21115 0.98700 1.04739 0.99534 1.20870 0.96833 0.94438 0.95927 1.73811 0.89383 1.26191 1.14269 0.87786 0.91679 0.91812 0.81595 0.79524 0.85594 0.84567 0.76226 0.86663 0.85981 0.91906 0.85161 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.57 101.05 1.07 1.40 16 2 O -0.34 -4.61 10.58 -40.56 -0.43 -5.04 16 3 C 0.56 7.94 7.97 34.54 0.28 8.22 16 4 O -0.50 -7.59 16.72 -19.26 -0.32 -7.91 16 5 C -0.01 -0.19 7.17 -82.79 -0.59 -0.79 16 6 C -0.17 -1.77 10.81 -39.35 -0.43 -2.20 16 7 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 8 N -0.27 -2.74 3.17 -62.50 -0.20 -2.94 16 9 C 0.10 0.68 6.88 -5.19 -0.04 0.65 16 10 C 0.49 5.93 7.68 -10.99 -0.08 5.84 16 11 O -0.49 -8.76 13.07 5.55 0.07 -8.69 16 12 N -0.65 -7.39 5.34 -9.82 -0.05 -7.44 16 13 C 0.03 0.45 6.30 -83.62 -0.53 -0.08 16 14 C -0.09 -1.45 9.96 -39.41 -0.39 -1.84 16 15 C -0.18 -3.60 9.98 -39.42 -0.39 -3.99 16 16 C 0.15 3.54 6.65 -39.09 -0.26 3.28 16 17 O -0.17 -4.92 9.75 0.04 0.00 -4.92 16 18 C -0.39 -10.96 9.48 30.88 0.29 -10.67 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 21 N -0.86 -25.12 13.67 55.48 0.76 -24.37 16 22 Si 0.94 20.65 29.55 -169.99 -5.02 15.63 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 C -0.22 -4.95 9.16 -39.42 -0.36 -5.31 16 27 C -0.06 -1.20 8.69 -39.41 -0.34 -1.54 16 28 N -0.20 -2.80 10.88 33.41 0.36 -2.44 16 29 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16 34 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.14 0.28 8.04 -51.93 -0.42 -0.14 16 36 H 0.40 2.66 8.82 -40.82 -0.36 2.30 16 37 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 38 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.13 2.97 5.63 -52.49 -0.30 2.67 16 41 H 0.13 2.52 6.23 -52.49 -0.33 2.19 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -38.82 369.25 -5.53 -44.34 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -4.19 Total: 4.54 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.07 Total: -6.34 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.87 Total: -37.18 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.68 Total: -26.55 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -38.82 -5.53 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361335109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.274 kcal (2) G-P(sol) polarization free energy of solvation -38.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds