Wall clock time and date at job start Wed Apr 1 2020 03:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34724 * 117.00279 * 2 1 4 4 O 1.21490 * 120.00124 * 359.97438 * 3 2 1 5 5 C 1.47576 * 120.00199 * 180.02562 * 3 2 1 6 6 C 1.41544 * 126.52719 * 180.02562 * 5 3 2 7 7 C 1.35353 * 105.50589 * 179.97438 * 6 5 3 8 8 N 1.35041 * 107.23660 * 0.25634 * 7 6 5 9 9 C 1.46505 * 124.87537 * 179.74250 * 8 7 6 10 10 C 1.50709 * 109.47042 * 125.00320 * 9 8 7 11 11 O 1.21293 * 119.99695 * 359.97438 * 10 9 8 12 12 N 1.34766 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.39993 * 120.00094 * 175.48858 * 12 10 9 14 14 C 1.38923 * 120.00556 * 214.85021 * 13 12 10 15 15 C 1.38001 * 119.99761 * 179.79303 * 14 13 12 16 16 C 1.38906 * 120.00429 * 0.45894 * 15 14 13 17 17 O 1.35776 * 120.00189 * 179.77270 * 16 15 14 18 18 C 1.34807 * 117.00194 * 185.36754 * 17 16 15 19 19 H 1.08002 * 120.00210 * 354.96219 * 18 17 16 20 20 C 1.38637 * 120.00095 * 174.96046 * 18 17 16 21 21 N 1.31571 * 120.00131 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99992 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46954 * 60.00193 * 22 20 18 24 24 H 1.48497 * 109.46951 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47266 * 300.00353 * 22 20 18 26 26 C 1.38910 * 120.00112 * 359.79154 * 16 15 14 27 27 C 1.38008 * 120.00073 * 359.97438 * 26 16 15 28 28 N 1.28471 * 110.24575 * 359.55317 * 8 7 6 29 29 H 1.09000 * 109.47611 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46943 * 300.00425 * 1 2 3 31 31 H 1.08996 * 109.46982 * 60.00061 * 1 2 3 32 32 H 1.08000 * 127.24768 * 359.94723 * 6 5 3 33 33 H 1.07999 * 126.37871 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47034 * 245.00226 * 9 8 7 35 35 H 1.09001 * 109.47256 * 5.00208 * 9 8 7 36 36 H 0.97005 * 120.00651 * 355.49451 * 12 10 9 37 37 H 1.08007 * 119.99794 * 0.02562 * 14 13 12 38 38 H 1.07997 * 119.99565 * 180.23158 * 15 14 13 39 39 H 0.96987 * 120.00392 * 179.97438 * 21 20 18 40 40 H 1.07996 * 119.99702 * 179.97438 * 26 16 15 41 41 H 1.08002 * 119.99793 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5374 1.2776 -0.0006 6 6 4.3193 2.4575 -0.0001 7 6 5.6064 2.0388 -0.0004 8 7 5.5879 0.6885 -0.0067 9 6 6.7782 -0.1656 -0.0145 10 6 6.7148 -1.1261 1.1451 11 8 5.7687 -1.0995 1.9036 12 7 7.7094 -2.0146 1.3392 13 6 7.6981 -2.8424 2.4681 14 6 8.8929 -3.1944 3.0835 15 6 8.8813 -4.0069 4.1989 16 6 7.6758 -4.4806 4.7007 17 8 7.6648 -5.2837 5.7954 18 6 6.4750 -5.7986 6.1648 19 1 5.5743 -5.5023 5.6476 20 6 6.4074 -6.7086 7.2085 21 7 7.5046 -7.0701 7.8382 22 14 4.7586 -7.4216 7.7208 23 1 4.1546 -8.1459 6.5737 24 1 4.9565 -8.3636 8.8516 25 1 3.8540 -6.3225 8.1439 26 6 6.4815 -4.1329 4.0824 27 6 6.4925 -3.3164 2.9698 28 7 4.3766 0.2605 -0.0009 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 3.9636 3.4773 -0.0001 33 1 6.4845 2.6674 0.0002 34 1 6.8173 -0.7258 -0.9486 35 1 7.6705 0.4540 0.0752 36 1 8.4332 -2.0806 0.6967 37 1 9.8305 -2.8290 2.6911 38 1 9.8099 -4.2774 4.6794 39 1 7.4574 -7.7064 8.5686 40 1 5.5443 -4.5016 4.4723 41 1 5.5640 -3.0465 2.4888 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361335109.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:08 Heat of formation + Delta-G solvation = -45.339483 kcal Electronic energy + Delta-G solvation = -28358.071151 eV Core-core repulsion = 24012.903593 eV Total energy + Delta-G solvation = -4345.167558 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.76563 -41.50681 -41.21125 -40.32004 -38.19941 -37.57890 -35.47443 -34.66847 -34.16586 -31.87843 -31.82520 -30.56192 -29.24698 -28.16256 -27.21763 -25.00621 -23.99723 -23.24260 -22.48986 -21.73601 -21.21444 -20.01180 -19.29634 -18.91285 -18.45722 -18.38173 -17.98303 -17.54474 -17.13060 -16.80953 -16.49047 -16.26283 -15.71577 -15.52636 -15.35227 -15.02700 -14.76845 -14.70315 -14.61875 -14.32819 -14.13092 -14.10033 -13.63607 -13.44183 -13.25067 -13.14191 -13.06478 -12.71480 -12.46553 -12.16769 -11.99647 -11.88421 -11.87092 -11.46679 -11.26532 -10.95344 -10.55270 -10.30764 -10.13070 -9.84667 -8.63928 -8.49264 -6.16035 0.19944 0.49168 0.53979 1.02371 1.25240 1.32843 1.40864 1.48193 1.55948 1.76238 2.04091 2.14795 2.17039 2.79949 3.13076 3.30020 3.50325 3.55275 3.92400 3.93254 4.09006 4.11260 4.14650 4.21821 4.27812 4.31024 4.47039 4.62371 4.65575 4.66821 4.70258 4.73114 5.05103 5.11496 5.15412 5.26178 5.33520 5.42665 5.57043 5.69398 5.75917 6.00245 6.15562 6.45966 6.50630 6.89331 6.95446 7.19175 7.74531 8.73116 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.002386 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.535487 B =11732.169860 C =13879.576767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.554 3.446 4 O -0.526 6.526 5 C -0.047 4.047 6 C -0.191 4.191 7 C 0.011 3.989 8 N -0.269 5.269 9 C 0.106 3.894 10 C 0.486 3.514 11 O -0.554 6.554 12 N -0.638 5.638 13 C 0.063 3.937 14 C -0.070 4.070 15 C -0.182 4.182 16 C 0.106 3.894 17 O -0.226 6.226 18 C -0.415 4.415 19 H 0.094 0.906 20 C -0.018 4.018 21 N -0.916 5.916 22 Si 1.013 2.987 23 H -0.259 1.259 24 H -0.267 1.267 25 H -0.262 1.262 26 C -0.234 4.234 27 C -0.077 4.077 28 N -0.244 5.244 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.178 0.822 33 H 0.244 0.756 34 H 0.163 0.837 35 H 0.200 0.800 36 H 0.433 0.567 37 H 0.176 0.824 38 H 0.130 0.870 39 H 0.274 0.726 40 H 0.110 0.890 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 17.946 -22.814 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.398 3.602 4 O -0.414 6.414 5 C -0.203 4.203 6 C -0.219 4.219 7 C -0.130 4.130 8 N -0.059 5.059 9 C -0.016 4.016 10 C 0.273 3.727 11 O -0.430 6.430 12 N -0.287 5.287 13 C -0.031 4.031 14 C -0.090 4.090 15 C -0.201 4.201 16 C 0.056 3.944 17 O -0.133 6.133 18 C -0.491 4.491 19 H 0.112 0.888 20 C -0.216 4.216 21 N -0.554 5.554 22 Si 0.833 3.167 23 H -0.183 1.183 24 H -0.191 1.191 25 H -0.187 1.187 26 C -0.254 4.254 27 C -0.097 4.097 28 N -0.082 5.082 29 H 0.146 0.854 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.195 0.805 33 H 0.260 0.740 34 H 0.181 0.819 35 H 0.217 0.783 36 H 0.274 0.726 37 H 0.193 0.807 38 H 0.148 0.852 39 H 0.083 0.917 40 H 0.128 0.872 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.073 16.852 -22.005 27.717 hybrid contribution -1.104 0.096 0.630 1.274 sum -1.031 16.949 -21.375 27.299 Atomic orbital electron populations 1.23624 0.74040 1.05800 1.03015 1.86663 1.25494 1.31944 1.83449 1.19918 0.87083 0.81488 0.71682 1.90805 1.66182 1.36552 1.47855 1.20977 0.90762 0.92882 1.15728 1.22057 0.91778 0.99109 1.08911 1.23705 1.00945 0.83447 1.04855 1.45404 1.04382 1.06607 1.49484 1.22338 0.86016 0.94133 0.99087 1.21357 0.82312 0.81905 0.87105 1.90861 1.33755 1.70815 1.47603 1.42889 1.27046 1.35226 1.23496 1.17296 0.93218 0.99347 0.93203 1.20825 0.97806 0.97026 0.93305 1.20381 0.95277 1.04514 0.99960 1.19988 0.95148 0.91745 0.87559 1.83926 1.33915 1.56680 1.38770 1.21692 0.84384 1.24992 1.18069 0.88848 1.26484 1.03510 0.96178 0.95426 1.70152 1.29933 1.32801 1.22532 0.84726 0.75046 0.78368 0.78589 1.18302 1.19081 1.18660 1.21080 0.97729 1.05803 1.00765 1.20909 0.98403 0.94794 0.95606 1.73736 0.91126 1.27177 1.16126 0.85407 0.91763 0.90823 0.80509 0.74032 0.81918 0.78317 0.72610 0.80695 0.85210 0.91704 0.87221 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.57 113.37 1.20 1.73 16 2 O -0.36 -10.12 10.58 -56.34 -0.60 -10.72 16 3 C 0.55 16.29 7.97 70.29 0.56 16.85 16 4 O -0.53 -16.37 16.72 19.87 0.33 -16.04 16 5 C -0.05 -1.27 7.17 42.42 0.30 -0.96 16 6 C -0.19 -3.59 10.81 22.42 0.24 -3.34 16 7 C 0.01 0.13 11.40 83.53 0.95 1.08 16 8 N -0.27 -4.43 3.17 -351.66 -1.12 -5.55 16 9 C 0.11 0.75 6.88 85.63 0.59 1.34 16 10 C 0.49 9.71 7.68 87.66 0.67 10.38 16 11 O -0.55 -18.82 13.07 -3.07 -0.04 -18.86 16 12 N -0.64 -11.02 5.34 -303.37 -1.62 -12.64 16 13 C 0.06 1.87 6.30 38.16 0.24 2.11 16 14 C -0.07 -1.98 9.96 22.38 0.22 -1.76 16 15 C -0.18 -7.13 9.98 22.37 0.22 -6.91 16 16 C 0.11 5.30 6.65 22.59 0.15 5.45 16 17 O -0.23 -13.69 9.75 -22.79 -0.22 -13.91 16 18 C -0.42 -24.85 9.48 67.92 0.64 -24.21 16 19 H 0.09 5.29 5.20 -2.91 -0.02 5.27 16 20 C -0.02 -1.04 5.49 84.83 0.47 -0.57 16 21 N -0.92 -56.40 13.67 21.61 0.30 -56.11 16 22 Si 1.01 44.16 29.55 68.60 2.03 46.19 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 25 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 26 C -0.23 -11.00 9.16 22.38 0.20 -10.80 16 27 C -0.08 -3.04 8.69 22.38 0.19 -2.84 16 28 N -0.24 -6.52 10.88 -48.22 -0.52 -7.05 16 29 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.24 -0.18 8.06 -2.91 -0.02 -0.20 16 34 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.20 -1.04 8.04 -2.39 -0.02 -1.06 16 36 H 0.43 2.54 8.82 -92.70 -0.82 1.73 16 37 H 0.18 2.96 8.06 -2.91 -0.02 2.93 16 38 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.27 15.43 8.31 -92.72 -0.77 14.66 16 40 H 0.11 5.46 5.63 -2.91 -0.02 5.44 16 41 H 0.12 4.88 6.23 -2.91 -0.02 4.86 16 Total: -1.00 -98.04 369.25 5.69 -92.34 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.29 Total: 14.79 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 6.87 Total: -12.45 kcal Atomic # 7 Polarization: -78.38 SS G_CDS: -2.96 Total: -81.34 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -0.53 Total: -59.53 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -98.04 5.69 -92.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361335109.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.003 kcal (2) G-P(sol) polarization free energy of solvation -98.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds