Wall clock time and date at job start Wed Apr 1 2020 03:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35543 * 116.99803 * 2 1 4 4 C 1.39195 * 120.44216 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41551 * 180.02562 * 4 3 2 6 6 O 1.35556 * 120.43785 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99484 * 179.97438 * 6 5 4 8 8 N 1.32732 * 119.11641 * 0.02562 * 5 4 3 9 9 C 1.32442 * 120.81037 * 0.02562 * 8 5 4 10 10 C 1.48510 * 119.13343 * 179.97438 * 9 8 5 11 11 O 1.21485 * 119.99783 * 0.27568 * 10 9 8 12 12 N 1.34766 * 120.00093 * 179.97438 * 10 9 8 13 13 C 1.39817 * 120.00408 * 174.89891 * 12 10 9 14 14 C 1.38988 * 120.03409 * 326.13946 * 13 12 10 15 15 C 1.38152 * 120.06083 * 179.73947 * 14 13 12 16 16 C 1.38172 * 120.14121 * 0.55781 * 15 14 13 17 17 C 1.38916 * 120.07817 * 359.69395 * 16 15 14 18 18 O 1.35749 * 120.03458 * 180.02562 * 17 16 15 19 19 C 1.34830 * 116.99859 * 185.92633 * 18 17 16 20 20 H 1.08000 * 120.00172 * 5.40675 * 19 18 17 21 21 C 1.38661 * 119.99898 * 185.41003 * 19 18 17 22 22 N 1.31556 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99852 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46966 * 90.00368 * 23 21 19 25 25 H 1.48496 * 109.46987 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.46905 * 330.00180 * 23 21 19 27 27 C 1.38739 * 120.03630 * 146.40939 * 13 12 10 28 28 N 1.32436 * 121.73374 * 0.25375 * 9 8 5 29 29 H 1.08998 * 109.47007 * 59.99922 * 1 2 3 30 30 H 1.09007 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47305 * 299.99674 * 1 2 3 32 32 H 1.07999 * 120.78897 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46964 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47174 * 299.99939 * 7 6 5 35 35 H 1.09003 * 109.47058 * 59.99805 * 7 6 5 36 36 H 0.97003 * 120.00243 * 354.90692 * 12 10 9 37 37 H 1.08001 * 119.97215 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.93161 * 180.24758 * 15 14 13 39 39 H 1.08004 * 119.96476 * 179.72183 * 16 15 14 40 40 H 0.97002 * 119.99968 * 179.97438 * 22 21 19 41 41 H 1.08001 * 120.07400 * 359.95807 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4337 1.2913 0.0005 5 6 4.0214 2.5531 0.0011 6 8 5.3708 2.6823 0.0011 7 6 5.8952 4.0116 0.0011 8 7 3.2428 3.6282 0.0016 9 6 1.9237 3.5104 0.0021 10 6 1.0882 4.7382 0.0032 11 8 1.6163 5.8322 -0.0014 12 7 -0.2558 4.6387 0.0032 13 6 -1.0421 5.7897 0.1119 14 6 -0.6027 6.8625 0.8785 15 6 -1.3767 8.0021 0.9820 16 6 -2.5947 8.0749 0.3335 17 6 -3.0419 7.0040 -0.4301 18 8 -4.2384 7.0766 -1.0672 19 6 -4.6694 5.9607 -1.6891 20 1 -4.1135 5.0398 -1.5927 21 6 -5.8264 5.9954 -2.4525 22 7 -6.2472 4.9064 -3.0589 23 14 -6.7883 7.5881 -2.6188 24 1 -6.2879 8.3483 -3.7921 25 1 -8.2286 7.2792 -2.8067 26 1 -6.6130 8.4028 -1.3897 27 6 -2.2644 5.8599 -0.5409 28 7 1.3300 2.3265 0.0071 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0413 0.3985 0.0005 33 1 6.9845 3.9725 0.0015 34 1 5.5505 4.5382 -0.8890 35 1 5.5505 4.5382 0.8910 36 1 -0.6778 3.7685 -0.0721 37 1 0.3468 6.8070 1.3902 38 1 -1.0314 8.8360 1.5750 39 1 -3.1995 8.9655 0.4200 40 1 -7.0568 4.9306 -3.5927 41 1 -2.6097 5.0262 -1.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361463674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:02 Heat of formation + Delta-G solvation = -36.741494 kcal Electronic energy + Delta-G solvation = -28945.812421 eV Core-core repulsion = 24601.017700 eV Total energy + Delta-G solvation = -4344.794721 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.90311 -40.21595 -39.56491 -38.90504 -38.01343 -36.60326 -34.51738 -33.04506 -32.43893 -32.29035 -29.60406 -28.95037 -28.34046 -27.29038 -25.89077 -25.19431 -23.57726 -22.54941 -21.83764 -20.61965 -19.39927 -18.95031 -18.07163 -17.77547 -17.11523 -16.96726 -16.85022 -16.11288 -15.95658 -15.67103 -15.46523 -15.22310 -15.04716 -14.64145 -14.43493 -14.12509 -13.95166 -13.86517 -13.50302 -13.14015 -12.51046 -12.38369 -12.27788 -12.21253 -12.19427 -11.81622 -11.68008 -11.50674 -11.22454 -10.97279 -10.82592 -10.33964 -10.12551 -10.09572 -10.06643 -9.76711 -9.53866 -9.42111 -8.88516 -7.87572 -7.35746 -6.45567 -4.12753 0.09881 0.76467 1.81755 2.04658 2.21535 2.53290 2.65024 2.87652 3.20481 3.24792 3.38953 3.50647 3.53487 3.96361 4.21322 4.43066 4.47045 4.66004 4.82803 4.91465 4.94378 4.98477 5.00395 5.02921 5.05315 5.08778 5.33916 5.44562 5.56525 5.85784 5.90020 6.08176 6.12515 6.28861 6.41482 6.49876 6.71211 6.78061 6.82040 7.11425 7.14413 7.33853 7.53673 7.62911 7.72911 7.97347 8.07847 8.89909 9.51565 10.62011 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002653 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.418324 B =10552.319985 C =12097.470101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.293 6.293 3 C 0.390 3.610 4 C -0.251 4.251 5 C 0.386 3.614 6 O -0.294 6.294 7 C 0.035 3.965 8 N -0.541 5.541 9 C 0.371 3.629 10 C 0.582 3.418 11 O -0.479 6.479 12 N -0.642 5.642 13 C 0.178 3.822 14 C -0.198 4.198 15 C -0.063 4.063 16 C -0.197 4.197 17 C 0.174 3.826 18 O -0.214 6.214 19 C -0.390 4.390 20 H 0.105 0.895 21 C 0.064 3.936 22 N -0.879 5.879 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.258 1.258 27 C -0.238 4.238 28 N -0.568 5.568 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.418 0.582 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.280 0.720 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.512 -8.050 7.390 21.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.197 6.197 3 C 0.205 3.795 4 C -0.274 4.274 5 C 0.202 3.798 6 O -0.198 6.198 7 C -0.060 4.060 8 N -0.276 5.276 9 C 0.099 3.901 10 C 0.364 3.636 11 O -0.348 6.348 12 N -0.288 5.288 13 C 0.085 3.915 14 C -0.219 4.219 15 C -0.081 4.081 16 C -0.217 4.217 17 C 0.121 3.879 18 O -0.119 6.119 19 C -0.466 4.466 20 H 0.123 0.877 21 C -0.139 4.139 22 N -0.517 5.517 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.182 1.182 27 C -0.260 4.260 28 N -0.306 5.306 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.256 0.744 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.090 0.910 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 18.422 -6.929 7.230 20.968 hybrid contribution -0.337 -0.615 -0.357 0.787 sum 18.084 -7.544 6.873 20.765 Atomic orbital electron populations 1.23128 0.75476 1.04106 1.03573 1.86247 1.24185 1.22888 1.86398 1.19539 0.88506 0.84757 0.86650 1.20800 0.92764 0.98405 1.15476 1.19569 0.84966 0.88341 0.86938 1.86242 1.14609 1.32418 1.86523 1.23077 0.98894 0.80397 1.03641 1.67882 1.05962 1.32551 1.21204 1.22106 0.86943 0.90481 0.90550 1.17150 0.81867 0.86141 0.78456 1.90841 1.72330 1.25765 1.45910 1.43152 1.04705 1.10378 1.70571 1.17373 0.90876 0.86712 0.96558 1.20611 1.02069 0.94620 1.04562 1.20521 0.93083 0.96770 0.97774 1.20276 0.98534 0.99064 1.03786 1.18797 0.85127 0.92627 0.91313 1.83620 1.29599 1.37889 1.60785 1.20726 1.09854 0.87322 1.28656 0.87746 1.24464 0.96393 0.98474 0.94598 1.69641 1.23866 1.27614 1.30595 0.86182 0.78402 0.82554 0.79803 1.19891 1.20793 1.18242 1.20927 0.96251 1.01672 1.07114 1.68016 1.41293 0.98381 1.22874 0.91228 0.87669 0.91381 0.81786 0.87870 0.91393 0.91443 0.74410 0.86116 0.86254 0.86239 0.91036 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.41 101.05 1.05 1.30 16 2 O -0.29 -2.84 10.49 -18.32 -0.19 -3.03 16 3 C 0.39 4.32 7.52 -16.80 -0.13 4.19 16 4 C -0.25 -2.54 10.09 -38.87 -0.39 -2.93 16 5 C 0.39 4.45 7.52 -16.81 -0.13 4.33 16 6 O -0.29 -2.92 10.49 -18.36 -0.19 -3.11 16 7 C 0.03 0.27 10.41 101.05 1.05 1.32 16 8 N -0.54 -7.43 9.06 -11.25 -0.10 -7.53 16 9 C 0.37 5.27 7.60 -157.12 -1.19 4.07 16 10 C 0.58 9.44 7.58 -12.03 -0.09 9.35 16 11 O -0.48 -8.97 14.58 5.38 0.08 -8.89 16 12 N -0.64 -10.20 5.32 -10.55 -0.06 -10.26 16 13 C 0.18 3.31 6.26 -83.75 -0.52 2.78 16 14 C -0.20 -3.59 8.65 -39.34 -0.34 -3.93 16 15 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 16 C -0.20 -3.83 9.99 -39.35 -0.39 -4.22 16 17 C 0.17 3.92 6.64 -39.13 -0.26 3.66 16 18 O -0.21 -5.49 8.58 0.05 0.00 -5.49 16 19 C -0.39 -10.65 9.90 30.89 0.31 -10.35 16 20 H 0.11 2.89 5.53 -52.49 -0.29 2.59 16 21 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 22 N -0.88 -24.78 13.96 55.48 0.77 -24.01 16 23 Si 0.91 21.26 28.62 -169.99 -4.86 16.40 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.24 -4.99 9.05 -39.20 -0.35 -5.34 16 28 N -0.57 -7.09 8.52 -11.25 -0.10 -7.18 16 29 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 35 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.42 5.79 8.13 -40.82 -0.33 5.45 16 37 H 0.12 2.13 6.45 -52.49 -0.34 1.79 16 38 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.12 2.14 8.06 -52.48 -0.42 1.71 16 40 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 2.97 5.72 -52.49 -0.30 2.67 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -31.58 365.15 -5.23 -36.81 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.20 Total: 6.38 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -1.89 Total: 4.41 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: 0.52 Total: -48.98 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.31 Total: -20.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.86 Total: 16.40 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.58 -5.23 -36.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361463674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.071 kcal (2) G-P(sol) polarization free energy of solvation -31.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds