Wall clock time and date at job start Wed Apr 1 2020 03:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35543 * 116.99803 * 2 1 4 4 C 1.39195 * 120.44216 * 179.97438 * 3 2 1 5 5 C 1.39193 * 118.41551 * 180.02562 * 4 3 2 6 6 O 1.35556 * 120.43785 * 180.02562 * 5 4 3 7 7 C 1.42903 * 116.99484 * 179.97438 * 6 5 4 8 8 N 1.32732 * 119.11641 * 0.02562 * 5 4 3 9 9 C 1.32442 * 120.81037 * 0.02562 * 8 5 4 10 10 C 1.48510 * 119.13343 * 179.97438 * 9 8 5 11 11 O 1.21485 * 119.99783 * 0.27568 * 10 9 8 12 12 N 1.34766 * 120.00093 * 179.97438 * 10 9 8 13 13 C 1.39817 * 120.00408 * 174.89891 * 12 10 9 14 14 C 1.38988 * 120.03409 * 326.13946 * 13 12 10 15 15 C 1.38152 * 120.06083 * 179.73947 * 14 13 12 16 16 C 1.38172 * 120.14121 * 0.55781 * 15 14 13 17 17 C 1.38916 * 120.07817 * 359.69395 * 16 15 14 18 18 O 1.35749 * 120.03458 * 180.02562 * 17 16 15 19 19 C 1.34830 * 116.99859 * 185.92633 * 18 17 16 20 20 H 1.08000 * 120.00172 * 5.40675 * 19 18 17 21 21 C 1.38661 * 119.99898 * 185.41003 * 19 18 17 22 22 N 1.31556 * 119.99989 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99852 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46966 * 90.00368 * 23 21 19 25 25 H 1.48496 * 109.46987 * 210.00135 * 23 21 19 26 26 H 1.48498 * 109.46905 * 330.00180 * 23 21 19 27 27 C 1.38739 * 120.03630 * 146.40939 * 13 12 10 28 28 N 1.32436 * 121.73374 * 0.25375 * 9 8 5 29 29 H 1.08998 * 109.47007 * 59.99922 * 1 2 3 30 30 H 1.09007 * 109.47103 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47305 * 299.99674 * 1 2 3 32 32 H 1.07999 * 120.78897 * 0.02562 * 4 3 2 33 33 H 1.09000 * 109.46964 * 179.97438 * 7 6 5 34 34 H 1.09002 * 109.47174 * 299.99939 * 7 6 5 35 35 H 1.09003 * 109.47058 * 59.99805 * 7 6 5 36 36 H 0.97003 * 120.00243 * 354.90692 * 12 10 9 37 37 H 1.08001 * 119.97215 * 0.02562 * 14 13 12 38 38 H 1.07995 * 119.93161 * 180.24758 * 15 14 13 39 39 H 1.08004 * 119.96476 * 179.72183 * 16 15 14 40 40 H 0.97002 * 119.99968 * 179.97438 * 22 21 19 41 41 H 1.08001 * 120.07400 * 359.95807 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4337 1.2913 0.0005 5 6 4.0214 2.5531 0.0011 6 8 5.3708 2.6823 0.0011 7 6 5.8952 4.0116 0.0011 8 7 3.2428 3.6282 0.0016 9 6 1.9237 3.5104 0.0021 10 6 1.0882 4.7382 0.0032 11 8 1.6163 5.8322 -0.0014 12 7 -0.2558 4.6387 0.0032 13 6 -1.0421 5.7897 0.1119 14 6 -0.6027 6.8625 0.8785 15 6 -1.3767 8.0021 0.9820 16 6 -2.5947 8.0749 0.3335 17 6 -3.0419 7.0040 -0.4301 18 8 -4.2384 7.0766 -1.0672 19 6 -4.6694 5.9607 -1.6891 20 1 -4.1135 5.0398 -1.5927 21 6 -5.8264 5.9954 -2.4525 22 7 -6.2472 4.9064 -3.0589 23 14 -6.7883 7.5881 -2.6188 24 1 -6.2879 8.3483 -3.7921 25 1 -8.2286 7.2792 -2.8067 26 1 -6.6130 8.4028 -1.3897 27 6 -2.2644 5.8599 -0.5409 28 7 1.3300 2.3265 0.0071 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0413 0.3985 0.0005 33 1 6.9845 3.9725 0.0015 34 1 5.5505 4.5382 -0.8890 35 1 5.5505 4.5382 0.8910 36 1 -0.6778 3.7685 -0.0721 37 1 0.3468 6.8070 1.3902 38 1 -1.0314 8.8360 1.5750 39 1 -3.1995 8.9655 0.4200 40 1 -7.0568 4.9306 -3.5927 41 1 -2.6097 5.0262 -1.1342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361463674.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:01 Heat of formation + Delta-G solvation = -60.973083 kcal Electronic energy + Delta-G solvation = -28946.863181 eV Core-core repulsion = 24601.017700 eV Total energy + Delta-G solvation = -4345.845482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.86552 -41.58928 -40.48140 -40.34151 -38.96518 -38.18306 -35.92635 -34.41055 -34.00377 -33.26787 -31.13799 -30.50986 -29.03989 -28.08637 -27.28537 -26.75598 -24.45976 -23.83639 -23.44892 -21.97864 -20.57766 -19.92462 -19.75320 -19.29609 -18.40270 -17.84920 -17.68076 -17.17945 -16.99168 -16.86362 -16.77199 -16.55065 -16.29194 -15.94881 -15.69554 -15.49764 -15.41561 -15.18558 -14.76467 -14.69678 -14.21062 -14.00307 -13.36626 -13.14916 -12.95186 -12.92636 -12.88481 -12.71947 -12.51969 -12.49919 -12.35447 -12.06492 -11.58066 -11.43356 -11.20668 -11.04331 -10.96943 -10.83894 -10.24625 -9.44973 -8.98873 -8.48570 -6.21121 -0.91693 -0.13663 0.34412 0.62571 1.16351 1.34222 1.35632 1.39431 1.48631 1.54932 2.02799 2.30091 2.46133 2.59600 2.77755 2.91214 3.07942 3.11414 3.50359 3.79869 4.00164 4.11133 4.27766 4.33892 4.36100 4.37937 4.39040 4.39993 4.41514 4.57185 4.58784 4.74457 4.80706 4.90356 5.28695 5.30042 5.38700 5.40771 5.60144 5.69919 5.74864 5.86394 5.90018 6.10370 6.18878 6.52616 6.76045 6.86016 7.58337 8.62565 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002653 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.418324 B =10552.319985 C =12097.470101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.290 6.290 3 C 0.381 3.619 4 C -0.232 4.232 5 C 0.377 3.623 6 O -0.291 6.291 7 C 0.031 3.969 8 N -0.556 5.556 9 C 0.357 3.643 10 C 0.587 3.413 11 O -0.507 6.507 12 N -0.637 5.637 13 C 0.178 3.822 14 C -0.190 4.190 15 C -0.049 4.049 16 C -0.195 4.195 17 C 0.142 3.858 18 O -0.238 6.238 19 C -0.398 4.398 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.921 5.921 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.248 4.248 28 N -0.569 5.569 29 H 0.061 0.939 30 H 0.133 0.867 31 H 0.066 0.934 32 H 0.193 0.807 33 H 0.138 0.862 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.427 0.573 37 H 0.132 0.868 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.284 0.716 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.315 -7.753 8.609 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.194 6.194 3 C 0.197 3.803 4 C -0.256 4.256 5 C 0.193 3.807 6 O -0.195 6.195 7 C -0.063 4.063 8 N -0.292 5.292 9 C 0.085 3.915 10 C 0.370 3.630 11 O -0.379 6.379 12 N -0.283 5.283 13 C 0.084 3.916 14 C -0.210 4.210 15 C -0.067 4.067 16 C -0.214 4.214 17 C 0.092 3.908 18 O -0.145 6.145 19 C -0.474 4.474 20 H 0.102 0.898 21 C -0.186 4.186 22 N -0.561 5.561 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.194 1.194 26 H -0.183 1.183 27 C -0.269 4.269 28 N -0.307 5.307 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.085 0.915 32 H 0.211 0.789 33 H 0.156 0.844 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.266 0.734 37 H 0.150 0.850 38 H 0.181 0.819 39 H 0.156 0.844 40 H 0.094 0.906 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 20.264 -6.667 8.470 22.953 hybrid contribution -0.579 -0.793 -0.586 1.143 sum 19.686 -7.459 7.884 22.480 Atomic orbital electron populations 1.23333 0.74471 1.05866 1.03110 1.86273 1.25127 1.21874 1.86135 1.19756 0.89059 0.84735 0.86741 1.21101 0.92586 0.98922 1.12942 1.19789 0.85490 0.88306 0.87091 1.86266 1.13522 1.33461 1.86262 1.23278 1.00802 0.79436 1.02778 1.67782 1.05874 1.33986 1.21546 1.21533 0.86997 0.90121 0.92849 1.17385 0.81657 0.86658 0.77295 1.90807 1.72783 1.27040 1.47241 1.43101 1.04766 1.10092 1.70349 1.17424 0.90289 0.87863 0.96009 1.20935 1.02278 0.94479 1.03352 1.20986 0.91577 0.97507 0.96643 1.20598 0.99391 0.98663 1.02788 1.19329 0.84922 0.94291 0.92276 1.83566 1.31473 1.37010 1.62422 1.20689 1.10118 0.87564 1.29025 0.89848 1.25237 0.97332 1.01599 0.94450 1.69719 1.24871 1.29417 1.32120 0.85265 0.77595 0.78638 0.79579 1.19437 1.19359 1.18312 1.20872 0.97293 1.01077 1.07670 1.67932 1.41631 0.98391 1.22721 0.92013 0.84872 0.91523 0.78927 0.84394 0.92404 0.92129 0.73437 0.85047 0.81875 0.84435 0.90612 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.41 113.37 1.18 1.55 16 2 O -0.29 -5.13 10.49 -88.48 -0.93 -6.06 16 3 C 0.38 7.91 7.52 84.79 0.64 8.55 16 4 C -0.23 -4.22 10.09 22.73 0.23 -3.99 16 5 C 0.38 8.14 7.52 84.79 0.64 8.78 16 6 O -0.29 -5.23 10.49 -88.62 -0.93 -6.16 16 7 C 0.03 0.44 10.41 113.37 1.18 1.62 16 8 N -0.56 -14.92 9.06 -302.19 -2.74 -17.66 16 9 C 0.36 10.02 7.60 137.69 1.05 11.07 16 10 C 0.59 18.96 7.58 86.99 0.66 19.62 16 11 O -0.51 -18.79 14.58 -3.67 -0.05 -18.84 16 12 N -0.64 -20.35 5.32 -305.60 -1.62 -21.98 16 13 C 0.18 6.60 6.26 38.17 0.24 6.84 16 14 C -0.19 -6.53 8.65 22.43 0.19 -6.34 16 15 C -0.05 -1.54 10.03 22.23 0.22 -1.32 16 16 C -0.19 -7.26 9.99 22.42 0.22 -7.04 16 17 C 0.14 6.46 6.64 22.56 0.15 6.61 16 18 O -0.24 -12.48 8.58 -22.72 -0.20 -12.68 16 19 C -0.40 -22.66 9.90 67.92 0.67 -21.98 16 20 H 0.08 4.93 5.53 -2.91 -0.02 4.91 16 21 C 0.01 0.71 5.49 84.84 0.47 1.18 16 22 N -0.92 -53.61 13.96 21.62 0.30 -53.31 16 23 Si 0.97 44.39 28.62 68.60 1.96 46.36 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 27 C -0.25 -10.68 9.05 22.52 0.20 -10.48 16 28 N -0.57 -13.88 8.52 -302.19 -2.57 -16.45 16 29 H 0.06 0.98 8.12 -2.39 -0.02 0.96 16 30 H 0.13 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.07 0.97 8.11 -2.39 -0.02 0.95 16 32 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.14 0.93 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 35 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 36 H 0.43 12.07 8.13 -92.71 -0.75 11.32 16 37 H 0.13 4.34 6.45 -2.91 -0.02 4.32 16 38 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.14 4.59 8.06 -2.91 -0.02 4.57 16 40 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.12 5.57 5.72 -2.91 -0.02 5.55 16 Total: -1.00 -69.94 365.15 1.52 -68.42 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.36 Total: 23.69 kcal Atomic # 6 Polarization: 6.73 SS G_CDS: 7.94 Total: 14.67 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -6.64 Total: -109.40 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -2.11 Total: -43.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.96 Total: 46.36 kcal Total: -69.94 1.52 -68.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361463674.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.446 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds