Wall clock time and date at job start Wed Apr 1 2020 03:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35791 * 116.99880 * 2 1 4 4 C 1.40340 * 120.90696 * 89.99633 * 3 2 1 5 5 O 1.35558 * 120.48731 * 0.04367 * 4 3 2 6 6 N 1.32405 * 119.02365 * 180.02562 * 4 3 2 7 7 C 1.32491 * 120.98194 * 359.97438 * 6 4 3 8 8 O 1.35541 * 118.99916 * 180.02562 * 7 6 4 9 9 N 1.31854 * 122.00769 * 0.28012 * 7 6 4 10 10 C 1.33534 * 120.87480 * 359.44702 * 9 7 6 11 11 C 1.48062 * 120.54138 * 180.27676 * 10 9 7 12 12 O 1.21524 * 119.99979 * 180.26397 * 11 10 9 13 13 N 1.34780 * 120.00130 * 0.26164 * 11 10 9 14 14 C 1.46490 * 120.00217 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47204 * 179.97438 * 14 13 11 16 16 C 1.38637 * 119.75027 * 269.72656 * 15 14 13 17 17 C 1.37619 * 120.24696 * 179.72042 * 16 15 14 18 18 C 1.40711 * 119.74345 * 0.57377 * 17 16 15 19 19 C 1.41398 * 120.24270 * 179.68127 * 18 17 16 20 20 H 1.07997 * 120.00187 * 204.39972 * 19 18 17 21 21 C 1.39949 * 120.00034 * 24.40606 * 19 18 17 22 22 N 1.30826 * 119.99739 * 17.84361 * 21 19 18 23 23 Si 1.86797 * 119.99952 * 197.84547 * 21 19 18 24 24 H 1.48508 * 109.46989 * 89.99894 * 23 21 19 25 25 H 1.48494 * 109.47314 * 209.99610 * 23 21 19 26 26 H 1.48502 * 109.47365 * 330.00007 * 23 21 19 27 27 C 1.40717 * 119.51439 * 359.70029 * 18 17 16 28 28 C 1.37613 * 119.74239 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.46623 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47344 * 300.00294 * 1 2 3 31 31 H 1.09000 * 109.47016 * 60.00093 * 1 2 3 32 32 H 0.96693 * 114.00195 * 269.97743 * 5 4 3 33 33 H 0.96698 * 114.00176 * 89.99709 * 8 7 6 34 34 H 0.97002 * 119.99480 * 359.97438 * 13 11 10 35 35 H 1.08999 * 109.46949 * 299.99652 * 14 13 11 36 36 H 1.09000 * 109.47456 * 59.99822 * 14 13 11 37 37 H 1.08001 * 119.87222 * 359.97340 * 16 15 14 38 38 H 1.07996 * 120.12645 * 180.27783 * 17 16 15 39 39 H 0.97006 * 119.99523 * 180.02562 * 22 21 19 40 40 H 1.08006 * 120.12817 * 179.97438 * 27 18 17 41 41 H 1.08001 * 119.87265 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3727 1.8522 1.2041 5 8 2.0788 1.2736 2.3942 6 7 2.9730 3.0316 1.1606 7 6 3.2656 3.6057 0.0029 8 8 3.8809 4.8134 0.0053 9 7 2.9720 3.0402 -1.1515 10 6 2.3713 1.8485 -1.1977 11 6 2.0505 1.2175 -2.4982 12 8 1.4994 0.1349 -2.5287 13 7 2.3697 1.8439 -3.6481 14 6 2.0518 1.2200 -4.9348 15 6 2.5087 2.1182 -6.0552 16 6 1.6427 3.0705 -6.5703 17 6 2.0513 3.8999 -7.5896 18 6 3.3494 3.7706 -8.1171 19 6 3.7778 4.6128 -9.1690 20 1 4.5701 4.2919 -9.8291 21 6 3.1753 5.8622 -9.3547 22 7 2.4828 6.4049 -8.3863 23 14 3.3598 6.7550 -10.9850 24 1 2.2514 6.3629 -11.8923 25 1 3.3153 8.2213 -10.7543 26 1 4.6592 6.3906 -11.6048 27 6 4.2178 2.7968 -7.5903 28 6 3.7899 1.9820 -6.5672 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2063 1.5064 2.7400 33 1 4.8465 4.7628 0.0061 34 1 2.8092 2.7083 -3.6236 35 1 2.5611 0.2591 -5.0082 36 1 0.9751 1.0670 -5.0083 37 1 0.6451 3.1643 -6.1673 38 1 1.3766 4.6440 -7.9863 39 1 2.0649 7.2707 -8.5152 40 1 5.2162 2.6886 -7.9880 41 1 4.4545 1.2336 -6.1617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363574045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:23 Heat of formation + Delta-G solvation = -69.240984 kcal Electronic energy + Delta-G solvation = -28955.397675 eV Core-core repulsion = 24609.193670 eV Total energy + Delta-G solvation = -4346.204005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95481 -39.54667 -39.06714 -37.97468 -37.61717 -36.98410 -34.83299 -33.88751 -33.34655 -30.68298 -30.34789 -29.38604 -27.61335 -26.99176 -25.56844 -24.10292 -23.50761 -21.32029 -21.09792 -20.17777 -19.64996 -19.27529 -18.72035 -18.08060 -17.41254 -17.23755 -16.56470 -15.86517 -15.63446 -15.38648 -15.29938 -15.02662 -14.52732 -14.34389 -13.88171 -13.80609 -13.39134 -13.32262 -13.09461 -12.60237 -12.54264 -12.20722 -12.10075 -12.04627 -11.71834 -11.59269 -11.20620 -11.07859 -11.07184 -10.92294 -10.77434 -10.48921 -10.35331 -9.75380 -9.53787 -9.50394 -9.35927 -9.23645 -8.78096 -7.59637 -7.47946 -6.88876 -4.48688 -0.05428 0.16224 2.29243 2.41977 2.53764 2.94716 2.97611 3.00147 3.02322 3.04273 3.11429 3.26763 3.36532 3.84031 4.06372 4.36402 4.46608 4.54267 4.87952 4.97761 5.13376 5.32869 5.45385 5.57486 5.74070 5.82403 6.00550 6.16631 6.22838 6.30712 6.61963 6.68449 6.84732 6.92516 6.95685 7.07978 7.15618 7.24070 7.35585 7.48996 7.62904 7.80313 7.93661 7.98326 8.16830 8.23000 8.51838 8.76731 8.84406 10.04930 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.002355 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.598545 B =11886.288918 C =12906.830290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.295 6.295 3 C 0.027 3.973 4 C 0.368 3.632 5 O -0.459 6.459 6 N -0.524 5.524 7 C 0.515 3.485 8 O -0.449 6.449 9 N -0.486 5.486 10 C 0.149 3.851 11 C 0.557 3.443 12 O -0.516 6.516 13 N -0.688 5.688 14 C 0.183 3.817 15 C -0.249 4.249 16 C -0.079 4.079 17 C -0.169 4.169 18 C 0.118 3.882 19 C -0.457 4.457 20 H 0.080 0.920 21 C 0.075 3.925 22 N -0.785 5.785 23 Si 0.910 3.090 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.261 1.261 27 C -0.229 4.229 28 C -0.067 4.067 29 H 0.103 0.897 30 H 0.039 0.961 31 H 0.055 0.945 32 H 0.409 0.591 33 H 0.417 0.583 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.282 0.718 40 H 0.093 0.907 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.026 -5.242 16.419 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.208 6.208 3 C -0.025 4.025 4 C 0.177 3.823 5 O -0.266 6.266 6 N -0.262 5.262 7 C 0.210 3.790 8 O -0.252 6.252 9 N -0.217 5.217 10 C 0.002 3.998 11 C 0.339 3.661 12 O -0.392 6.392 13 N -0.339 5.339 14 C 0.062 3.938 15 C -0.251 4.251 16 C -0.098 4.098 17 C -0.189 4.189 18 C 0.115 3.885 19 C -0.486 4.486 20 H 0.098 0.902 21 C -0.144 4.144 22 N -0.410 5.410 23 Si 0.734 3.266 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.249 4.249 28 C -0.086 4.086 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.269 0.731 33 H 0.278 0.722 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.049 -5.127 16.368 17.421 hybrid contribution -0.079 0.623 -0.356 0.722 sum -3.128 -4.504 16.012 16.925 Atomic orbital electron populations 1.23017 0.77550 1.04287 1.00224 1.86113 1.20487 1.20743 1.93479 1.20443 1.00575 0.90027 0.91474 1.19569 0.91261 0.85803 0.85692 1.84800 1.40984 1.67673 1.33120 1.67334 1.15969 1.10612 1.32294 1.19709 0.92134 0.85263 0.81878 1.84775 1.25833 1.19762 1.94850 1.68066 1.13938 1.09376 1.30331 1.22241 0.93384 0.88885 0.95264 1.17562 0.80812 0.85112 0.82604 1.90825 1.42198 1.19713 1.86443 1.46529 1.58427 1.23763 1.05133 1.20094 0.99499 0.94868 0.79344 1.18923 0.96975 1.05221 1.03947 1.20548 0.97063 0.95184 0.97022 1.21306 0.96697 1.01061 0.99794 1.17678 0.90623 0.89939 0.90286 1.19682 1.17239 0.99744 1.11928 0.90217 1.25961 0.93158 0.97609 0.97639 1.69824 1.24562 1.15556 1.31046 0.86281 0.80057 0.78271 0.81988 1.19163 1.20221 1.18524 1.20971 0.98926 1.03169 1.01841 1.20400 0.94238 0.97586 0.96388 0.87819 0.94228 0.92671 0.73143 0.72248 0.75010 0.91817 0.91857 0.89399 0.86351 0.90653 0.88859 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.55 101.05 1.07 1.46 16 2 O -0.30 -3.76 8.78 -46.80 -0.41 -4.17 16 3 C 0.03 0.34 5.81 -38.29 -0.22 0.12 16 4 C 0.37 4.17 7.86 -16.51 -0.13 4.04 16 5 O -0.46 -4.01 13.42 -30.77 -0.41 -4.42 16 6 N -0.52 -6.37 10.46 -14.65 -0.15 -6.53 16 7 C 0.51 6.42 8.69 -91.50 -0.80 5.62 16 8 O -0.45 -4.69 13.64 -18.32 -0.25 -4.94 16 9 N -0.49 -6.72 9.72 -11.31 -0.11 -6.83 16 10 C 0.15 2.12 6.79 -82.59 -0.56 1.56 16 11 C 0.56 8.89 7.81 -12.23 -0.10 8.79 16 12 O -0.52 -9.03 14.21 -16.05 -0.23 -9.26 16 13 N -0.69 -11.21 5.54 -62.37 -0.35 -11.55 16 14 C 0.18 3.17 5.79 -5.20 -0.03 3.14 16 15 C -0.25 -5.02 5.27 -104.33 -0.55 -5.57 16 16 C -0.08 -1.73 9.67 -39.66 -0.38 -2.11 16 17 C -0.17 -4.17 8.70 -38.87 -0.34 -4.50 16 18 C 0.12 2.98 5.57 -106.83 -0.60 2.39 16 19 C -0.46 -11.60 9.05 -37.74 -0.34 -11.94 16 20 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 21 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 22 N -0.79 -19.44 10.95 55.55 0.61 -18.83 16 23 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 27 C -0.23 -5.34 9.80 -38.87 -0.38 -5.72 16 28 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.58 7.56 -51.93 -0.39 0.18 16 32 H 0.41 1.32 9.06 45.56 0.41 1.73 16 33 H 0.42 2.15 9.06 45.56 0.41 2.57 16 34 H 0.41 6.81 7.84 -40.82 -0.32 6.49 16 35 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 36 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.12 3.03 6.15 -52.49 -0.32 2.70 16 39 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 40 H 0.09 2.06 8.06 -52.48 -0.42 1.63 16 41 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -31.08 366.31 -7.36 -38.43 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -2.71 Total: 12.48 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -3.83 Total: -2.80 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.00 Total: -43.74 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.30 Total: -22.78 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.08 -7.36 -38.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363574045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.806 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds