Wall clock time and date at job start Wed Apr 1 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35791 * 116.99880 * 2 1 4 4 C 1.40340 * 120.90696 * 89.99633 * 3 2 1 5 5 O 1.35558 * 120.48731 * 0.04367 * 4 3 2 6 6 N 1.32405 * 119.02365 * 180.02562 * 4 3 2 7 7 C 1.32491 * 120.98194 * 359.97438 * 6 4 3 8 8 O 1.35541 * 118.99916 * 180.02562 * 7 6 4 9 9 N 1.31854 * 122.00769 * 0.28012 * 7 6 4 10 10 C 1.33534 * 120.87480 * 359.44702 * 9 7 6 11 11 C 1.48062 * 120.54138 * 180.27676 * 10 9 7 12 12 O 1.21524 * 119.99979 * 180.26397 * 11 10 9 13 13 N 1.34780 * 120.00130 * 0.26164 * 11 10 9 14 14 C 1.46490 * 120.00217 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47204 * 179.97438 * 14 13 11 16 16 C 1.38637 * 119.75027 * 269.72656 * 15 14 13 17 17 C 1.37619 * 120.24696 * 179.72042 * 16 15 14 18 18 C 1.40711 * 119.74345 * 0.57377 * 17 16 15 19 19 C 1.41398 * 120.24270 * 179.68127 * 18 17 16 20 20 H 1.07997 * 120.00187 * 204.39972 * 19 18 17 21 21 C 1.39949 * 120.00034 * 24.40606 * 19 18 17 22 22 N 1.30826 * 119.99739 * 17.84361 * 21 19 18 23 23 Si 1.86797 * 119.99952 * 197.84547 * 21 19 18 24 24 H 1.48508 * 109.46989 * 89.99894 * 23 21 19 25 25 H 1.48494 * 109.47314 * 209.99610 * 23 21 19 26 26 H 1.48502 * 109.47365 * 330.00007 * 23 21 19 27 27 C 1.40717 * 119.51439 * 359.70029 * 18 17 16 28 28 C 1.37613 * 119.74239 * 0.02562 * 27 18 17 29 29 H 1.08994 * 109.46623 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47344 * 300.00294 * 1 2 3 31 31 H 1.09000 * 109.47016 * 60.00093 * 1 2 3 32 32 H 0.96693 * 114.00195 * 269.97743 * 5 4 3 33 33 H 0.96698 * 114.00176 * 89.99709 * 8 7 6 34 34 H 0.97002 * 119.99480 * 359.97438 * 13 11 10 35 35 H 1.08999 * 109.46949 * 299.99652 * 14 13 11 36 36 H 1.09000 * 109.47456 * 59.99822 * 14 13 11 37 37 H 1.08001 * 119.87222 * 359.97340 * 16 15 14 38 38 H 1.07996 * 120.12645 * 180.27783 * 17 16 15 39 39 H 0.97006 * 119.99523 * 180.02562 * 22 21 19 40 40 H 1.08006 * 120.12817 * 179.97438 * 27 18 17 41 41 H 1.08001 * 119.87265 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 2.3727 1.8522 1.2041 5 8 2.0788 1.2736 2.3942 6 7 2.9730 3.0316 1.1606 7 6 3.2656 3.6057 0.0029 8 8 3.8809 4.8134 0.0053 9 7 2.9720 3.0402 -1.1515 10 6 2.3713 1.8485 -1.1977 11 6 2.0505 1.2175 -2.4982 12 8 1.4994 0.1349 -2.5287 13 7 2.3697 1.8439 -3.6481 14 6 2.0518 1.2200 -4.9348 15 6 2.5087 2.1182 -6.0552 16 6 1.6427 3.0705 -6.5703 17 6 2.0513 3.8999 -7.5896 18 6 3.3494 3.7706 -8.1171 19 6 3.7778 4.6128 -9.1690 20 1 4.5701 4.2919 -9.8291 21 6 3.1753 5.8622 -9.3547 22 7 2.4828 6.4049 -8.3863 23 14 3.3598 6.7550 -10.9850 24 1 2.2514 6.3629 -11.8923 25 1 3.3153 8.2213 -10.7543 26 1 4.6592 6.3906 -11.6048 27 6 4.2178 2.7968 -7.5903 28 6 3.7899 1.9820 -6.5672 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.2063 1.5064 2.7400 33 1 4.8465 4.7628 0.0061 34 1 2.8092 2.7083 -3.6236 35 1 2.5611 0.2591 -5.0082 36 1 0.9751 1.0670 -5.0083 37 1 0.6451 3.1643 -6.1673 38 1 1.3766 4.6440 -7.9863 39 1 2.0649 7.2707 -8.5152 40 1 5.2162 2.6886 -7.9880 41 1 4.4545 1.2336 -6.1617 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363574045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:22 Heat of formation + Delta-G solvation = -97.126229 kcal Electronic energy + Delta-G solvation = -28956.606870 eV Core-core repulsion = 24609.193670 eV Total energy + Delta-G solvation = -4347.413200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.89411 -40.75897 -39.96082 -39.42827 -38.68592 -37.84467 -36.36509 -35.20799 -34.61460 -32.11289 -31.50665 -31.16695 -28.96929 -27.98522 -26.76473 -25.29553 -24.75146 -22.90488 -22.43926 -21.81979 -20.68026 -20.22347 -19.55211 -19.23572 -18.96453 -18.35909 -17.49037 -17.20623 -16.90560 -16.65887 -16.35780 -16.08851 -15.89257 -15.54818 -15.40282 -15.26503 -14.82830 -14.28594 -14.21395 -13.94291 -13.82482 -13.59555 -13.43595 -13.38873 -12.92927 -12.83700 -12.72734 -12.49884 -12.40556 -12.10080 -12.03803 -11.82507 -11.60393 -11.45421 -11.28251 -11.03836 -10.47286 -10.30598 -10.09669 -9.39375 -9.28443 -8.66770 -6.36863 -1.04081 -0.71255 0.81817 1.14674 1.37846 1.38688 1.41772 1.51690 1.51782 2.00336 2.05568 2.20063 2.22990 2.38202 2.70058 3.05969 3.39797 3.66054 3.74537 3.96360 4.18295 4.28553 4.31083 4.42910 4.51730 4.53140 4.65840 4.75575 4.78724 5.04955 5.10138 5.14696 5.30559 5.36236 5.43768 5.68842 5.90483 5.98472 6.09024 6.19630 6.27372 6.36321 6.37835 6.39360 6.52861 6.68235 6.92036 6.95126 7.00947 8.29512 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016939 B = 0.002355 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.598545 B =11886.288918 C =12906.830290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.313 6.313 3 C 0.028 3.972 4 C 0.385 3.615 5 O -0.458 6.458 6 N -0.527 5.527 7 C 0.515 3.485 8 O -0.454 6.454 9 N -0.503 5.503 10 C 0.133 3.867 11 C 0.561 3.439 12 O -0.533 6.533 13 N -0.689 5.689 14 C 0.192 3.808 15 C -0.230 4.230 16 C -0.081 4.081 17 C -0.193 4.193 18 C 0.087 3.913 19 C -0.496 4.496 20 H 0.076 0.924 21 C 0.036 3.964 22 N -0.818 5.818 23 Si 0.981 3.019 24 H -0.263 1.263 25 H -0.268 1.268 26 H -0.258 1.258 27 C -0.244 4.244 28 C -0.066 4.066 29 H 0.118 0.882 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.434 0.566 33 H 0.437 0.563 34 H 0.413 0.587 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.289 0.711 40 H 0.098 0.902 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.247 -5.769 18.142 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.227 6.227 3 C -0.024 4.024 4 C 0.192 3.808 5 O -0.269 6.269 6 N -0.266 5.266 7 C 0.211 3.789 8 O -0.261 6.261 9 N -0.234 5.234 10 C -0.013 4.013 11 C 0.345 3.655 12 O -0.410 6.410 13 N -0.340 5.340 14 C 0.070 3.930 15 C -0.232 4.232 16 C -0.100 4.100 17 C -0.212 4.212 18 C 0.084 3.916 19 C -0.525 4.525 20 H 0.094 0.906 21 C -0.180 4.180 22 N -0.443 5.443 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.182 1.182 27 C -0.263 4.263 28 C -0.085 4.085 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.299 0.701 33 H 0.302 0.698 34 H 0.249 0.751 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.273 -5.659 18.119 19.262 hybrid contribution -0.052 0.654 -0.652 0.925 sum -3.325 -5.005 17.467 18.472 Atomic orbital electron populations 1.23245 0.75828 1.05552 1.01040 1.86076 1.22222 1.20805 1.93561 1.20482 1.00481 0.89968 0.91486 1.19511 0.90062 0.85142 0.86077 1.84762 1.42953 1.67405 1.31743 1.67462 1.16253 1.10936 1.31957 1.19786 0.91935 0.85488 0.81688 1.84741 1.27731 1.18915 1.94732 1.68006 1.14728 1.09501 1.31196 1.21929 0.94981 0.89578 0.94769 1.17710 0.80042 0.84771 0.83020 1.90809 1.42859 1.20446 1.86858 1.46323 1.58860 1.23786 1.04995 1.19947 0.99905 0.94344 0.78810 1.19180 0.96210 1.04086 1.03728 1.20766 0.98188 0.94820 0.96182 1.21264 0.96584 1.01988 1.01368 1.18010 0.91392 0.91035 0.91149 1.19902 1.18558 1.01026 1.12984 0.90550 1.26755 0.92480 0.97886 1.00844 1.69872 1.25473 1.16225 1.32779 0.85215 0.79990 0.77221 0.77394 1.18732 1.19259 1.18219 1.21161 0.99089 1.03438 1.02662 1.20691 0.94922 0.97460 0.95421 0.86419 0.90868 0.94387 0.70148 0.69808 0.75061 0.90943 0.91262 0.87643 0.88120 0.90025 0.88395 0.86568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.55 113.37 1.20 1.79 16 2 O -0.31 -7.41 8.78 -64.71 -0.57 -7.97 16 3 C 0.03 0.68 5.81 23.11 0.13 0.81 16 4 C 0.38 7.83 7.86 85.12 0.67 8.50 16 5 O -0.46 -6.57 13.42 -76.79 -1.03 -7.60 16 6 N -0.53 -11.76 10.46 -425.95 -4.46 -16.22 16 7 C 0.52 12.10 8.69 180.66 1.57 13.68 16 8 O -0.45 -8.81 13.64 -88.45 -1.21 -10.02 16 9 N -0.50 -13.38 9.72 -302.83 -2.94 -16.33 16 10 C 0.13 3.64 6.79 41.82 0.28 3.93 16 11 C 0.56 17.33 7.81 86.85 0.68 18.01 16 12 O -0.53 -18.06 14.21 16.67 0.24 -17.82 16 13 N -0.69 -21.65 5.54 -469.51 -2.60 -24.25 16 14 C 0.19 6.31 5.79 85.64 0.50 6.81 16 15 C -0.23 -9.07 5.27 -19.67 -0.10 -9.17 16 16 C -0.08 -3.53 9.67 22.22 0.21 -3.31 16 17 C -0.19 -9.77 8.70 22.73 0.20 -9.57 16 18 C 0.09 4.54 5.57 -21.29 -0.12 4.42 16 19 C -0.50 -26.08 9.05 23.46 0.21 -25.87 16 20 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 21 C 0.04 1.78 5.14 85.26 0.44 2.22 16 22 N -0.82 -41.71 10.95 21.83 0.24 -41.47 16 23 Si 0.98 37.28 29.59 68.60 2.03 39.31 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 26 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 27 C -0.24 -11.49 9.80 22.73 0.22 -11.27 16 28 C -0.07 -2.72 9.67 22.22 0.21 -2.50 16 29 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.04 0.75 7.56 -2.39 -0.02 0.73 16 32 H 0.43 1.22 9.06 -74.06 -0.67 0.55 16 33 H 0.44 3.83 9.06 -74.06 -0.67 3.16 16 34 H 0.41 13.25 7.84 -92.71 -0.73 12.52 16 35 H 0.07 2.30 8.08 -2.39 -0.02 2.28 16 36 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 37 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.10 5.39 6.15 -2.91 -0.02 5.37 16 39 H 0.29 13.32 8.30 -92.70 -0.77 12.55 16 40 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 41 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -67.91 366.31 -4.92 -72.83 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.92 Total: 31.09 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.31 Total: -1.54 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -9.76 Total: -98.27 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -2.57 Total: -43.42 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -67.91 -4.92 -72.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363574045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.296 kcal (2) G-P(sol) polarization free energy of solvation -67.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds