Wall clock time and date at job start Wed Apr 1 2020 03:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34898 * 117.00002 * 2 1 4 4 O 1.21620 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.46468 * 119.99769 * 180.02562 * 3 2 1 6 6 C 1.36636 * 125.99705 * 179.97438 * 5 3 2 7 7 C 1.40307 * 106.70540 * 179.97438 * 6 5 3 8 8 C 1.35167 * 107.12394 * 0.02562 * 7 6 5 9 9 C 1.50707 * 125.60524 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46944 * 89.99776 * 9 8 7 11 11 C 1.34781 * 119.99731 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99652 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99873 * 179.97438 * 11 10 9 14 14 C 1.39465 * 119.99910 * 184.72044 * 13 11 10 15 15 C 1.38643 * 119.64806 * 174.61220 * 14 13 11 16 16 C 1.40818 * 118.67162 * 179.97438 * 15 14 13 17 17 C 1.41549 * 120.99562 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99934 * 151.75487 * 17 16 15 19 19 C 1.40033 * 120.00144 * 331.75544 * 17 16 15 20 20 N 1.30744 * 119.99671 * 350.11153 * 19 17 16 21 21 Si 1.86797 * 119.99850 * 170.11006 * 19 17 16 22 22 H 1.48494 * 109.47215 * 90.00045 * 21 19 17 23 23 H 1.48508 * 109.46692 * 210.00140 * 21 19 17 24 24 H 1.48496 * 109.47276 * 329.99558 * 21 19 17 25 25 C 1.41159 * 118.00875 * 0.02562 * 16 15 14 26 26 C 1.36596 * 119.12896 * 359.97438 * 25 16 15 27 27 N 1.32075 * 121.25422 * 359.73377 * 26 25 16 28 28 O 1.33911 * 108.78437 * 0.25954 * 8 7 6 29 29 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46625 * 300.00364 * 1 2 3 31 31 H 1.08995 * 109.47037 * 59.99804 * 1 2 3 32 32 H 1.08007 * 126.64422 * 0.02562 * 6 5 3 33 33 H 1.08006 * 126.43633 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46896 * 329.99481 * 9 8 7 35 35 H 1.08999 * 109.46619 * 209.99360 * 9 8 7 36 36 H 0.96998 * 120.00290 * 359.97438 * 10 9 8 37 37 H 0.96994 * 120.00434 * 4.99506 * 13 11 10 38 38 H 1.07998 * 120.66067 * 0.02562 * 15 14 13 39 39 H 0.97001 * 119.99461 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.43982 * 179.97438 * 25 16 15 41 41 H 1.07996 * 119.37039 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2713 2.4245 -0.0011 7 6 5.6180 2.0308 -0.0009 8 6 5.6376 0.6793 -0.0009 9 6 6.8755 -0.1803 -0.0001 10 7 7.2758 -0.4587 1.3814 11 6 8.3638 -1.2149 1.6283 12 8 9.0132 -1.6655 0.7045 13 7 8.7324 -1.4706 2.8992 14 6 9.9118 -2.1692 3.1560 15 6 10.3421 -2.3310 4.4640 16 6 11.5354 -3.0405 4.6998 17 6 12.0204 -3.2344 6.0154 18 1 12.6204 -4.1019 6.2474 19 6 11.7221 -2.3014 7.0162 20 7 11.1654 -1.1610 6.7018 21 14 12.1195 -2.6864 8.8004 22 1 13.4916 -2.2138 9.1150 23 1 11.1442 -1.9987 9.6842 24 1 12.0385 -4.1528 9.0203 25 6 12.2342 -3.5515 3.5848 26 6 11.7319 -3.3416 2.3320 27 7 10.6060 -2.6761 2.1478 28 8 4.3762 0.2298 -0.0067 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.8956 3.4371 -0.0008 33 1 6.4775 2.6849 -0.0009 34 1 7.6818 0.3435 -0.5136 35 1 6.6665 -1.1186 -0.5139 36 1 6.7579 -0.0988 2.1183 37 1 8.1755 -1.1722 3.6351 38 1 9.7730 -1.9219 5.2856 39 1 10.9592 -0.5146 7.3950 40 1 13.1539 -4.1013 3.7204 41 1 12.2635 -3.7305 1.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364165036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:25 Heat of formation + Delta-G solvation = -46.422130 kcal Electronic energy + Delta-G solvation = -27969.601804 eV Core-core repulsion = 23624.387299 eV Total energy + Delta-G solvation = -4345.214505 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.21538 -40.61614 -39.85356 -38.10515 -36.99770 -35.13851 -34.22637 -33.75823 -33.52010 -31.21294 -30.50036 -28.97917 -28.17357 -26.44066 -25.97446 -23.31422 -22.23005 -21.96696 -21.64206 -20.85470 -20.18921 -18.94711 -18.30157 -17.72357 -17.46463 -17.22745 -16.53419 -16.11871 -15.59428 -15.32254 -15.17025 -14.66255 -14.46327 -14.23237 -14.17893 -13.70351 -13.63234 -13.56416 -13.45849 -13.35751 -12.87584 -12.68222 -12.60236 -12.50665 -12.14647 -11.46194 -11.34401 -11.30567 -11.19764 -10.91162 -10.52894 -10.32524 -10.16091 -9.81260 -9.74273 -9.39648 -9.14992 -9.02854 -7.95413 -7.76082 -7.04667 -6.77944 -4.63348 0.32044 1.68038 1.81851 2.43128 2.49397 2.66724 2.79168 3.00985 3.05121 3.05942 3.22382 3.77005 3.85334 4.03887 4.40217 4.42676 4.49983 4.65437 4.69493 4.74672 5.03041 5.05012 5.12231 5.20233 5.41798 5.46154 5.66932 5.73870 5.85055 5.90424 6.40881 6.41218 6.51387 6.57965 6.77835 6.93201 7.10252 7.16252 7.19030 7.39057 7.46025 7.84984 8.07085 8.30192 8.43849 8.70737 8.75117 9.06808 9.68790 10.09838 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.001925 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.282079 B =14544.334969 C =15490.389329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.347 6.347 3 C 0.555 3.445 4 O -0.488 6.488 5 C -0.065 4.065 6 C -0.101 4.101 7 C -0.199 4.199 8 C 0.022 3.978 9 C 0.219 3.781 10 N -0.754 5.754 11 C 0.696 3.304 12 O -0.530 6.530 13 N -0.665 5.665 14 C 0.352 3.648 15 C -0.239 4.239 16 C 0.144 3.856 17 C -0.456 4.456 18 H 0.081 0.919 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.280 4.280 26 C 0.118 3.882 27 N -0.551 5.551 28 O -0.142 6.142 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.167 0.833 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.396 0.604 37 H 0.405 0.595 38 H 0.129 0.871 39 H 0.281 0.719 40 H 0.102 0.898 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.117 6.880 -8.414 20.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.263 6.263 3 C 0.399 3.601 4 O -0.377 6.377 5 C -0.116 4.116 6 C -0.121 4.121 7 C -0.219 4.219 8 C -0.031 4.031 9 C 0.095 3.905 10 N -0.414 5.414 11 C 0.395 3.605 12 O -0.400 6.400 13 N -0.312 5.312 14 C 0.126 3.874 15 C -0.265 4.265 16 C 0.136 3.864 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.142 4.142 20 N -0.422 5.422 21 Si 0.738 3.262 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.304 4.304 26 C -0.035 4.035 27 N -0.270 5.270 28 O -0.037 6.037 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.184 0.816 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.229 0.771 37 H 0.240 0.760 38 H 0.147 0.853 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.264 6.778 -10.105 21.121 hybrid contribution -0.259 0.486 2.476 2.537 sum -17.523 7.264 -7.629 20.446 Atomic orbital electron populations 1.23393 0.75100 1.04345 1.02904 1.86687 1.24176 1.31599 1.83833 1.19176 0.85488 0.82209 0.73200 1.90957 1.64358 1.35909 1.46455 1.20697 0.87931 0.86288 1.16697 1.22038 0.92323 0.98908 0.98785 1.21777 0.97910 0.94247 1.07956 1.22987 0.83804 0.94152 1.02154 1.19492 0.88071 0.98486 0.84497 1.45169 1.31221 1.57672 1.07346 1.15968 0.80658 0.79698 0.84164 1.91034 1.53336 1.53348 1.42306 1.42501 1.24209 1.58161 1.06360 1.17952 0.86033 0.93056 0.90318 1.21545 1.00189 1.11433 0.93317 1.17579 0.88662 0.87336 0.92831 1.19557 1.28983 1.07515 0.92712 0.90044 1.25937 0.92823 0.93963 1.01524 1.69752 1.31620 1.05345 1.35497 0.86221 0.79028 0.79961 0.80990 1.19421 1.20105 1.18445 1.21714 1.02822 1.12193 0.93655 1.21491 0.91611 0.95025 0.95405 1.67197 1.09578 1.17009 1.33217 1.84144 1.15299 1.34550 1.69675 0.87501 0.91431 0.91463 0.81520 0.81561 0.87652 0.89269 0.77090 0.76038 0.85315 0.90847 0.87956 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.35 -3.42 10.58 -42.48 -0.45 -3.87 16 3 C 0.55 5.98 7.93 34.05 0.27 6.25 16 4 O -0.49 -5.88 16.66 -19.36 -0.32 -6.20 16 5 C -0.07 -0.69 7.18 -36.85 -0.26 -0.95 16 6 C -0.10 -0.89 10.62 -39.38 -0.42 -1.31 16 7 C -0.20 -1.66 10.77 -39.90 -0.43 -2.09 16 8 C 0.02 0.22 6.68 -35.40 -0.24 -0.02 16 9 C 0.22 2.36 6.20 -5.19 -0.03 2.33 16 10 N -0.75 -9.60 5.55 -66.41 -0.37 -9.97 16 11 C 0.70 12.72 8.52 -86.92 -0.74 11.98 16 12 O -0.53 -11.92 14.60 5.30 0.08 -11.84 16 13 N -0.66 -12.66 5.40 -15.86 -0.09 -12.75 16 14 C 0.35 8.40 7.42 -154.67 -1.15 7.25 16 15 C -0.24 -5.95 8.60 -38.46 -0.33 -6.28 16 16 C 0.14 3.75 5.58 -106.55 -0.59 3.15 16 17 C -0.46 -11.58 9.13 -37.65 -0.34 -11.92 16 18 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 19 C 0.08 1.80 5.30 -17.34 -0.09 1.71 16 20 N -0.80 -19.40 10.83 55.55 0.60 -18.80 16 21 Si 0.91 17.80 29.57 -169.99 -5.03 12.77 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 23 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 25 C -0.28 -6.78 9.85 -39.07 -0.38 -7.17 16 26 C 0.12 2.81 11.10 -18.04 -0.20 2.61 16 27 N -0.55 -13.90 7.86 -12.75 -0.10 -14.00 16 28 O -0.14 -1.57 10.67 4.74 0.05 -1.52 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.17 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.40 4.08 8.48 -40.82 -0.35 3.73 16 37 H 0.41 6.27 8.71 -40.82 -0.36 5.91 16 38 H 0.13 3.18 6.28 -52.49 -0.33 2.85 16 39 H 0.28 6.21 8.29 -40.82 -0.34 5.87 16 40 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 41 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -33.38 371.05 -8.29 -41.67 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -4.38 Total: 12.08 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -3.88 Total: 6.84 kcal Atomic # 7 Polarization: -55.57 SS G_CDS: 0.05 Total: -55.52 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.64 Total: -23.44 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.38 -8.29 -41.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364165036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.748 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds