Wall clock time and date at job start Wed Apr 1 2020 03:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34898 * 117.00002 * 2 1 4 4 O 1.21620 * 119.99978 * 0.02562 * 3 2 1 5 5 C 1.46468 * 119.99769 * 180.02562 * 3 2 1 6 6 C 1.36636 * 125.99705 * 179.97438 * 5 3 2 7 7 C 1.40307 * 106.70540 * 179.97438 * 6 5 3 8 8 C 1.35167 * 107.12394 * 0.02562 * 7 6 5 9 9 C 1.50707 * 125.60524 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46944 * 89.99776 * 9 8 7 11 11 C 1.34781 * 119.99731 * 179.97438 * 10 9 8 12 12 O 1.21579 * 119.99652 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99873 * 179.97438 * 11 10 9 14 14 C 1.39465 * 119.99910 * 184.72044 * 13 11 10 15 15 C 1.38643 * 119.64806 * 174.61220 * 14 13 11 16 16 C 1.40818 * 118.67162 * 179.97438 * 15 14 13 17 17 C 1.41549 * 120.99562 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99934 * 151.75487 * 17 16 15 19 19 C 1.40033 * 120.00144 * 331.75544 * 17 16 15 20 20 N 1.30744 * 119.99671 * 350.11153 * 19 17 16 21 21 Si 1.86797 * 119.99850 * 170.11006 * 19 17 16 22 22 H 1.48494 * 109.47215 * 90.00045 * 21 19 17 23 23 H 1.48508 * 109.46692 * 210.00140 * 21 19 17 24 24 H 1.48496 * 109.47276 * 329.99558 * 21 19 17 25 25 C 1.41159 * 118.00875 * 0.02562 * 16 15 14 26 26 C 1.36596 * 119.12896 * 359.97438 * 25 16 15 27 27 N 1.32075 * 121.25422 * 359.73377 * 26 25 16 28 28 O 1.33911 * 108.78437 * 0.25954 * 8 7 6 29 29 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46625 * 300.00364 * 1 2 3 31 31 H 1.08995 * 109.47037 * 59.99804 * 1 2 3 32 32 H 1.08007 * 126.64422 * 0.02562 * 6 5 3 33 33 H 1.08006 * 126.43633 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46896 * 329.99481 * 9 8 7 35 35 H 1.08999 * 109.46619 * 209.99360 * 9 8 7 36 36 H 0.96998 * 120.00290 * 359.97438 * 10 9 8 37 37 H 0.96994 * 120.00434 * 4.99506 * 13 11 10 38 38 H 1.07998 * 120.66067 * 0.02562 * 15 14 13 39 39 H 0.97001 * 119.99461 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.43982 * 179.97438 * 25 16 15 41 41 H 1.07996 * 119.37039 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0645 1.2019 0.0000 4 8 1.4021 2.2219 0.0005 5 6 3.5271 1.2785 -0.0006 6 6 4.2713 2.4245 -0.0011 7 6 5.6180 2.0308 -0.0009 8 6 5.6376 0.6793 -0.0009 9 6 6.8755 -0.1803 -0.0001 10 7 7.2758 -0.4587 1.3814 11 6 8.3638 -1.2149 1.6283 12 8 9.0132 -1.6655 0.7045 13 7 8.7324 -1.4706 2.8992 14 6 9.9118 -2.1692 3.1560 15 6 10.3421 -2.3310 4.4640 16 6 11.5354 -3.0405 4.6998 17 6 12.0204 -3.2344 6.0154 18 1 12.6204 -4.1019 6.2474 19 6 11.7221 -2.3014 7.0162 20 7 11.1654 -1.1610 6.7018 21 14 12.1195 -2.6864 8.8004 22 1 13.4916 -2.2138 9.1150 23 1 11.1442 -1.9987 9.6842 24 1 12.0385 -4.1528 9.0203 25 6 12.2342 -3.5515 3.5848 26 6 11.7319 -3.3416 2.3320 27 7 10.6060 -2.6761 2.1478 28 8 4.3762 0.2298 -0.0067 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 3.8956 3.4371 -0.0008 33 1 6.4775 2.6849 -0.0009 34 1 7.6818 0.3435 -0.5136 35 1 6.6665 -1.1186 -0.5139 36 1 6.7579 -0.0988 2.1183 37 1 8.1755 -1.1722 3.6351 38 1 9.7730 -1.9219 5.2856 39 1 10.9592 -0.5146 7.3950 40 1 13.1539 -4.1013 3.7204 41 1 12.2635 -3.7305 1.4762 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364165036.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:17:24 Heat of formation + Delta-G solvation = -67.664436 kcal Electronic energy + Delta-G solvation = -27970.522940 eV Core-core repulsion = 23624.387299 eV Total energy + Delta-G solvation = -4346.135641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.97438 -41.44690 -41.33307 -39.81378 -37.76130 -36.44379 -35.85651 -35.47497 -34.28780 -32.45558 -32.08097 -30.40910 -29.06245 -27.89016 -27.28185 -24.18280 -23.79765 -23.36957 -22.77579 -21.76729 -21.60164 -19.89694 -19.53563 -19.40749 -18.28173 -18.05198 -17.85616 -17.15362 -16.88156 -16.76988 -16.43863 -16.02993 -16.00222 -15.76421 -15.16666 -14.99141 -14.66810 -14.62758 -14.36593 -14.30920 -14.26587 -14.11176 -14.00468 -13.27141 -13.15056 -13.11532 -12.84965 -12.65410 -12.13812 -12.07920 -11.95796 -11.89231 -11.49943 -11.37981 -11.21280 -11.15613 -10.22777 -9.96382 -9.85591 -9.59887 -8.82526 -8.57612 -6.54669 -0.46512 0.84993 0.89957 1.03122 1.10475 1.43165 1.54709 1.58928 1.63877 1.71214 1.89827 2.22209 2.25843 2.86925 3.17975 3.27583 3.72452 3.73199 3.78331 4.14590 4.20085 4.24599 4.29083 4.34125 4.44332 4.63255 4.66202 4.74755 4.78906 4.86445 4.95312 5.03542 5.12236 5.18660 5.26067 5.28830 5.51794 5.66795 5.66951 5.80343 5.99554 6.28501 6.40563 6.58183 6.81457 6.85587 6.93676 7.57185 7.89588 8.32399 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.001925 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.282079 B =14544.334969 C =15490.389329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.555 3.445 4 O -0.507 6.507 5 C -0.084 4.084 6 C -0.093 4.093 7 C -0.183 4.183 8 C 0.015 3.985 9 C 0.221 3.779 10 N -0.731 5.731 11 C 0.696 3.304 12 O -0.573 6.573 13 N -0.659 5.659 14 C 0.352 3.648 15 C -0.255 4.255 16 C 0.115 3.885 17 C -0.485 4.485 18 H 0.083 0.917 19 C 0.037 3.963 20 N -0.819 5.819 21 Si 0.988 3.012 22 H -0.265 1.265 23 H -0.265 1.265 24 H -0.259 1.259 25 C -0.293 4.293 26 C 0.113 3.887 27 N -0.574 5.574 28 O -0.158 6.158 29 H 0.132 0.868 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.116 0.884 35 H 0.083 0.917 36 H 0.410 0.590 37 H 0.420 0.580 38 H 0.125 0.875 39 H 0.290 0.710 40 H 0.116 0.884 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.732 7.820 -7.736 20.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.401 3.599 4 O -0.398 6.398 5 C -0.134 4.134 6 C -0.112 4.112 7 C -0.203 4.203 8 C -0.037 4.037 9 C 0.097 3.903 10 N -0.391 5.391 11 C 0.396 3.604 12 O -0.447 6.447 13 N -0.308 5.308 14 C 0.124 3.876 15 C -0.281 4.281 16 C 0.106 3.894 17 C -0.516 4.516 18 H 0.101 0.899 19 C -0.179 4.179 20 N -0.445 5.445 21 Si 0.808 3.192 22 H -0.189 1.189 23 H -0.189 1.189 24 H -0.183 1.183 25 C -0.317 4.317 26 C -0.040 4.040 27 N -0.294 5.294 28 O -0.054 6.054 29 H 0.150 0.850 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.203 0.797 33 H 0.208 0.792 34 H 0.134 0.866 35 H 0.101 0.899 36 H 0.246 0.754 37 H 0.258 0.742 38 H 0.143 0.857 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -17.946 7.751 -9.430 21.703 hybrid contribution -0.156 0.231 2.198 2.216 sum -18.101 7.982 -7.232 21.063 Atomic orbital electron populations 1.23709 0.73217 1.06227 1.03335 1.86677 1.26164 1.31241 1.83481 1.19272 0.85720 0.82228 0.72729 1.90937 1.64804 1.36406 1.47626 1.20890 0.87991 0.86765 1.17786 1.22346 0.92295 0.99292 0.97293 1.22062 0.98461 0.93746 1.06000 1.22798 0.83098 0.94449 1.03394 1.19543 0.88999 0.98710 0.83019 1.44934 1.29373 1.55806 1.08982 1.16061 0.81387 0.79790 0.83178 1.91002 1.55163 1.55191 1.43341 1.42384 1.23198 1.57619 1.07577 1.18144 0.86980 0.92585 0.89869 1.21515 1.00407 1.12463 0.93714 1.18016 0.89439 0.88096 0.93820 1.19838 1.30064 1.08324 0.93414 0.89894 1.26781 0.92234 0.93354 1.05535 1.69791 1.31460 1.05970 1.37273 0.85111 0.79008 0.79726 0.75324 1.18937 1.18949 1.18283 1.21895 1.03468 1.12721 0.93605 1.21944 0.91442 0.94405 0.96220 1.67335 1.10359 1.17906 1.33766 1.84113 1.15793 1.35169 1.70286 0.84963 0.91113 0.90960 0.79736 0.79186 0.86587 0.89895 0.75357 0.74237 0.85708 0.89883 0.86609 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.57 113.37 1.20 1.51 16 2 O -0.36 -6.90 10.58 -56.74 -0.60 -7.50 16 3 C 0.55 11.67 7.93 69.97 0.55 12.23 16 4 O -0.51 -11.93 16.66 19.44 0.32 -11.61 16 5 C -0.08 -1.67 7.18 24.04 0.17 -1.50 16 6 C -0.09 -1.44 10.62 22.40 0.24 -1.20 16 7 C -0.18 -2.58 10.77 22.07 0.24 -2.34 16 8 C 0.02 0.27 6.68 24.98 0.17 0.44 16 9 C 0.22 4.47 6.20 85.64 0.53 5.00 16 10 N -0.73 -17.65 5.55 -482.30 -2.68 -20.33 16 11 C 0.70 25.07 8.52 179.06 1.53 26.60 16 12 O -0.57 -25.77 14.60 -3.96 -0.06 -25.83 16 13 N -0.66 -24.94 5.40 -322.37 -1.74 -26.68 16 14 C 0.35 16.92 7.42 132.76 0.98 17.91 16 15 C -0.26 -12.92 8.60 23.00 0.20 -12.72 16 16 C 0.11 6.06 5.58 -21.11 -0.12 5.94 16 17 C -0.49 -24.88 9.13 23.52 0.21 -24.66 16 18 H 0.08 4.07 7.87 -2.91 -0.02 4.05 16 19 C 0.04 1.75 5.30 85.29 0.45 2.20 16 20 N -0.82 -39.74 10.83 21.84 0.24 -39.50 16 21 Si 0.99 35.73 29.57 68.60 2.03 37.76 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.64 16 23 H -0.27 -9.05 7.11 99.48 0.71 -8.34 16 24 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 25 C -0.29 -14.37 9.85 22.60 0.22 -14.15 16 26 C 0.11 5.39 11.10 84.27 0.94 6.33 16 27 N -0.57 -29.16 7.86 -194.26 -1.53 -30.69 16 28 O -0.16 -3.34 10.67 -4.89 -0.05 -3.39 16 29 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.19 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 34 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.41 7.70 8.48 -92.71 -0.79 6.91 16 37 H 0.42 12.77 8.71 -92.71 -0.81 11.96 16 38 H 0.13 6.28 6.28 -2.91 -0.02 6.26 16 39 H 0.29 12.62 8.29 -92.71 -0.77 11.85 16 40 H 0.12 5.17 8.06 -2.91 -0.02 5.15 16 41 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 Total: -1.00 -72.49 371.05 2.97 -69.52 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.47 Total: 36.68 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: 7.51 Total: 21.57 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -5.71 Total: -117.20 kcal Atomic # 8 Polarization: -47.94 SS G_CDS: -0.39 Total: -48.33 kcal Atomic # 14 Polarization: 35.73 SS G_CDS: 2.03 Total: 37.76 kcal Total: -72.49 2.97 -69.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364165036.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.855 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds