Wall clock time and date at job start Wed Apr 1 2020 03:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34773 * 116.99850 * 2 1 4 4 O 1.21530 * 120.00573 * 359.97438 * 3 2 1 5 5 C 1.47284 * 119.99662 * 179.97438 * 3 2 1 6 6 C 1.36175 * 126.45408 * 179.97438 * 5 3 2 7 7 O 1.34235 * 106.93503 * 180.20389 * 6 5 3 8 8 C 1.34056 * 108.24031 * 359.63658 * 7 6 5 9 9 C 1.50703 * 125.36707 * 180.12251 * 8 7 6 10 10 N 1.46504 * 109.46861 * 270.29503 * 9 8 7 11 11 C 1.34777 * 119.99784 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99799 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00288 * 179.97438 * 11 10 9 14 14 C 1.39238 * 120.00297 * 175.70818 * 13 11 10 15 15 C 1.39481 * 119.83347 * 215.02239 * 14 13 11 16 16 C 1.36371 * 120.16876 * 179.75736 * 15 14 13 17 17 C 1.40870 * 119.82757 * 0.53810 * 16 15 14 18 18 C 1.41155 * 120.16375 * 179.69217 * 17 16 15 19 19 H 1.08002 * 120.00200 * 214.79951 * 18 17 16 20 20 C 1.39899 * 119.99790 * 34.80900 * 18 17 16 21 21 N 1.30879 * 119.99792 * 355.54804 * 20 18 17 22 22 Si 1.86796 * 119.99739 * 175.55745 * 20 18 17 23 23 H 1.48502 * 109.47317 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.46969 * 209.99642 * 22 20 18 25 25 H 1.48501 * 109.47480 * 329.99471 * 22 20 18 26 26 C 1.40866 * 119.67234 * 359.71439 * 17 16 15 27 27 C 1.36373 * 119.82981 * 0.02562 * 26 17 16 28 28 N 1.29913 * 109.26689 * 0.37516 * 8 7 6 29 29 H 1.09000 * 109.46754 * 60.00321 * 1 2 3 30 30 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47340 * 300.00121 * 1 2 3 32 32 H 1.07993 * 126.53249 * 359.94883 * 6 5 3 33 33 H 1.08998 * 109.47054 * 30.29143 * 9 8 7 34 34 H 1.08998 * 109.47373 * 150.29537 * 9 8 7 35 35 H 0.96995 * 119.99951 * 359.97438 * 10 9 8 36 36 H 0.96997 * 119.99473 * 355.70784 * 13 11 10 37 37 H 1.08002 * 119.91435 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.08410 * 180.24665 * 16 15 14 39 39 H 0.97000 * 119.99274 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.08442 * 179.97438 * 26 17 16 41 41 H 1.08003 * 119.91768 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2779 0.0006 6 6 4.2854 2.4140 0.0001 7 8 5.5723 2.0323 -0.0036 8 6 5.6126 0.6923 0.0026 9 6 6.8671 -0.1427 0.0037 10 7 7.2745 -0.4138 -1.3772 11 6 8.3774 -1.1485 -1.6224 12 8 9.0346 -1.5859 -0.6977 13 7 8.7520 -1.3984 -2.8928 14 6 9.9388 -2.0806 -3.1473 15 6 10.7037 -1.7490 -4.2656 16 6 11.8697 -2.4093 -4.5187 17 6 12.2953 -3.4363 -3.6536 18 6 13.4978 -4.1289 -3.9125 19 1 13.5774 -5.1797 -3.6761 20 6 14.5864 -3.4540 -4.4751 21 7 14.4627 -2.2038 -4.8419 22 14 16.2164 -4.3374 -4.7031 23 1 16.2457 -4.9854 -6.0390 24 1 17.3284 -3.3581 -4.6035 25 1 16.3712 -5.3710 -3.6481 26 6 11.5148 -3.7692 -2.5292 27 6 10.3538 -3.0963 -2.2862 28 7 4.3996 0.2270 0.0021 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9158 3.4287 -0.0014 33 1 7.6624 0.3972 0.5178 34 1 6.6762 -1.0846 0.5178 35 1 6.7500 -0.0651 -2.1149 36 1 8.1947 -1.1030 -3.6297 37 1 10.3734 -0.9648 -4.9308 38 1 12.4629 -2.1487 -5.3828 39 1 15.2175 -1.7360 -5.2323 40 1 11.8346 -4.5557 -1.8618 41 1 9.7540 -3.3506 -1.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364188294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:19 Heat of formation + Delta-G solvation = -52.646503 kcal Electronic energy + Delta-G solvation = -27697.054520 eV Core-core repulsion = 23351.570106 eV Total energy + Delta-G solvation = -4345.484414 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.08668 -40.69419 -40.00614 -37.53655 -36.98328 -35.66201 -35.06299 -34.34763 -32.93579 -31.39867 -29.57274 -28.95137 -28.44569 -27.17096 -24.91929 -24.68797 -22.33930 -21.72482 -21.22905 -20.92564 -20.19303 -18.96595 -18.20376 -17.66141 -17.45248 -17.23298 -16.92367 -16.79069 -16.54171 -15.45431 -15.27862 -14.92301 -14.72105 -14.47152 -14.04928 -13.91178 -13.83674 -13.55257 -13.36024 -12.81005 -12.67337 -12.57046 -12.10477 -11.96507 -11.68776 -11.43664 -11.34346 -11.28840 -11.27162 -11.14642 -11.00384 -10.71420 -10.17967 -9.81236 -9.54970 -9.47117 -9.26317 -9.15834 -8.88665 -7.52244 -6.83164 -6.59370 -4.31652 0.34287 1.16452 1.84007 2.11420 2.43985 2.66710 2.95441 3.10193 3.11041 3.13961 3.18069 3.30386 3.60910 4.00171 4.06819 4.22272 4.51940 4.64756 4.72780 4.73706 4.82348 4.85111 5.05050 5.12323 5.22757 5.41263 5.66855 5.75885 6.20273 6.21403 6.45078 6.73925 6.76036 6.81662 7.04970 7.14926 7.20997 7.26273 7.38263 7.67113 7.84963 7.95984 8.10797 8.32123 8.39755 8.65983 8.88163 8.95633 9.05007 10.31828 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001596 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.883328 B =17535.942995 C =17744.190221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.335 6.335 3 C 0.558 3.442 4 O -0.502 6.502 5 C -0.065 4.065 6 C 0.041 3.959 7 O -0.182 6.182 8 C 0.190 3.810 9 C 0.240 3.760 10 N -0.752 5.752 11 C 0.701 3.299 12 O -0.572 6.572 13 N -0.662 5.662 14 C 0.020 3.980 15 C -0.122 4.122 16 C -0.141 4.141 17 C 0.098 3.902 18 C -0.461 4.461 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.813 5.813 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.204 4.204 27 C -0.086 4.086 28 N -0.422 5.422 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.238 0.762 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.397 0.603 36 H 0.393 0.607 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.277 0.723 40 H 0.096 0.904 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.070 9.403 6.382 24.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.402 3.598 4 O -0.390 6.390 5 C -0.184 4.184 6 C -0.034 4.034 7 O -0.066 6.066 8 C -0.020 4.020 9 C 0.115 3.885 10 N -0.411 5.411 11 C 0.402 3.598 12 O -0.449 6.449 13 N -0.308 5.308 14 C -0.072 4.072 15 C -0.142 4.142 16 C -0.161 4.161 17 C 0.096 3.904 18 C -0.492 4.492 19 H 0.094 0.906 20 C -0.145 4.145 21 N -0.441 5.441 22 Si 0.740 3.260 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.224 4.224 27 C -0.106 4.106 28 N -0.152 5.152 29 H 0.084 0.916 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.254 0.746 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.230 0.770 36 H 0.226 0.774 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -21.672 8.829 7.161 24.473 hybrid contribution 0.033 1.014 -0.773 1.276 sum -21.639 9.844 6.387 24.616 Atomic orbital electron populations 1.23395 0.75374 1.04319 1.02759 1.86680 1.23722 1.31281 1.83351 1.19367 0.86013 0.81990 0.72465 1.90908 1.65599 1.36000 1.46531 1.20626 0.92692 0.90088 1.14987 1.25436 0.79548 1.00923 0.97467 1.84509 1.28382 1.25699 1.68048 1.26386 0.96022 0.78248 1.01350 1.19358 0.86922 0.97156 0.85056 1.44974 1.29873 1.59191 1.07100 1.15842 0.80338 0.79368 0.84288 1.90941 1.54816 1.55936 1.43193 1.42059 1.24099 1.59470 1.05141 1.17061 0.89288 0.99226 1.01647 1.20288 0.95977 1.00456 0.97509 1.21173 0.94280 0.99477 1.01125 1.17729 0.91664 0.91807 0.89246 1.19491 0.96296 0.97364 1.36072 0.90639 1.25867 1.00994 0.94770 0.92899 1.69766 1.32301 1.09878 1.32108 0.86206 0.80602 0.79778 0.79427 1.19578 1.20349 1.18742 1.20808 0.98064 1.04359 0.99143 1.20428 0.97360 0.94312 0.98471 1.70956 0.98952 1.30501 1.14773 0.91551 0.87513 0.91565 0.74614 0.87988 0.86703 0.76970 0.77384 0.89144 0.85043 0.91208 0.88584 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.57 101.05 1.07 1.27 16 2 O -0.34 -3.27 10.58 -40.69 -0.43 -3.70 16 3 C 0.56 5.64 7.96 34.41 0.27 5.91 16 4 O -0.50 -5.49 16.68 -19.29 -0.32 -5.81 16 5 C -0.07 -0.63 7.04 -83.04 -0.58 -1.21 16 6 C 0.04 0.29 11.95 29.99 0.36 0.65 16 7 O -0.18 -1.50 10.72 6.55 0.07 -1.43 16 8 C 0.19 1.79 7.67 -13.09 -0.10 1.69 16 9 C 0.24 2.40 6.30 -5.19 -0.03 2.37 16 10 N -0.75 -8.66 5.55 -66.41 -0.37 -9.03 16 11 C 0.70 11.62 8.40 -86.92 -0.73 10.89 16 12 O -0.57 -11.83 13.76 5.29 0.07 -11.76 16 13 N -0.66 -11.17 5.31 -14.10 -0.07 -11.24 16 14 C 0.02 0.44 6.31 -83.57 -0.53 -0.09 16 15 C -0.12 -2.73 9.90 -39.79 -0.39 -3.12 16 16 C -0.14 -3.58 8.61 -39.26 -0.34 -3.91 16 17 C 0.10 2.62 5.55 -106.80 -0.59 2.02 16 18 C -0.46 -12.28 9.02 -37.85 -0.34 -12.62 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 21 N -0.81 -21.10 10.60 55.55 0.59 -20.51 16 22 Si 0.91 18.99 29.56 -169.99 -5.03 13.97 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 26 C -0.20 -5.12 9.74 -39.26 -0.38 -5.50 16 27 C -0.09 -2.02 8.61 -39.79 -0.34 -2.37 16 28 N -0.42 -4.58 11.36 -7.67 -0.09 -4.67 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.24 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.40 3.62 8.48 -40.82 -0.35 3.27 16 36 H 0.39 5.12 8.83 -40.82 -0.36 4.76 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 3.46 6.13 -52.49 -0.32 3.14 16 39 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 40 H 0.10 2.30 8.06 -52.49 -0.42 1.87 16 41 H 0.11 2.56 6.22 -52.48 -0.33 2.23 16 LS Contribution 369.16 15.07 5.56 5.56 Total: -1.00 -33.53 369.16 -7.06 -40.59 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.28 Total: 10.40 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.76 Total: -2.37 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: 0.06 Total: -45.46 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.61 Total: -22.70 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.53 -7.06 -40.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364188294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.057 kcal (2) G-P(sol) polarization free energy of solvation -33.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds