Wall clock time and date at job start Wed Apr 1 2020 03:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34773 * 116.99850 * 2 1 4 4 O 1.21530 * 120.00573 * 359.97438 * 3 2 1 5 5 C 1.47284 * 119.99662 * 179.97438 * 3 2 1 6 6 C 1.36175 * 126.45408 * 179.97438 * 5 3 2 7 7 O 1.34235 * 106.93503 * 180.20389 * 6 5 3 8 8 C 1.34056 * 108.24031 * 359.63658 * 7 6 5 9 9 C 1.50703 * 125.36707 * 180.12251 * 8 7 6 10 10 N 1.46504 * 109.46861 * 270.29503 * 9 8 7 11 11 C 1.34777 * 119.99784 * 180.02562 * 10 9 8 12 12 O 1.21585 * 119.99799 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00288 * 179.97438 * 11 10 9 14 14 C 1.39238 * 120.00297 * 175.70818 * 13 11 10 15 15 C 1.39481 * 119.83347 * 215.02239 * 14 13 11 16 16 C 1.36371 * 120.16876 * 179.75736 * 15 14 13 17 17 C 1.40870 * 119.82757 * 0.53810 * 16 15 14 18 18 C 1.41155 * 120.16375 * 179.69217 * 17 16 15 19 19 H 1.08002 * 120.00200 * 214.79951 * 18 17 16 20 20 C 1.39899 * 119.99790 * 34.80900 * 18 17 16 21 21 N 1.30879 * 119.99792 * 355.54804 * 20 18 17 22 22 Si 1.86796 * 119.99739 * 175.55745 * 20 18 17 23 23 H 1.48502 * 109.47317 * 89.99713 * 22 20 18 24 24 H 1.48503 * 109.46969 * 209.99642 * 22 20 18 25 25 H 1.48501 * 109.47480 * 329.99471 * 22 20 18 26 26 C 1.40866 * 119.67234 * 359.71439 * 17 16 15 27 27 C 1.36373 * 119.82981 * 0.02562 * 26 17 16 28 28 N 1.29913 * 109.26689 * 0.37516 * 8 7 6 29 29 H 1.09000 * 109.46754 * 60.00321 * 1 2 3 30 30 H 1.09001 * 109.47364 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47340 * 300.00121 * 1 2 3 32 32 H 1.07993 * 126.53249 * 359.94883 * 6 5 3 33 33 H 1.08998 * 109.47054 * 30.29143 * 9 8 7 34 34 H 1.08998 * 109.47373 * 150.29537 * 9 8 7 35 35 H 0.96995 * 119.99951 * 359.97438 * 10 9 8 36 36 H 0.96997 * 119.99473 * 355.70784 * 13 11 10 37 37 H 1.08002 * 119.91435 * 359.97438 * 15 14 13 38 38 H 1.08001 * 120.08410 * 180.24665 * 16 15 14 39 39 H 0.97000 * 119.99274 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.08442 * 179.97438 * 26 17 16 41 41 H 1.08003 * 119.91768 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2201 -0.0005 5 6 3.5346 1.2779 0.0006 6 6 4.2854 2.4140 0.0001 7 8 5.5723 2.0323 -0.0036 8 6 5.6126 0.6923 0.0026 9 6 6.8671 -0.1427 0.0037 10 7 7.2745 -0.4138 -1.3772 11 6 8.3774 -1.1485 -1.6224 12 8 9.0346 -1.5859 -0.6977 13 7 8.7520 -1.3984 -2.8928 14 6 9.9388 -2.0806 -3.1473 15 6 10.7037 -1.7490 -4.2656 16 6 11.8697 -2.4093 -4.5187 17 6 12.2953 -3.4363 -3.6536 18 6 13.4978 -4.1289 -3.9125 19 1 13.5774 -5.1797 -3.6761 20 6 14.5864 -3.4540 -4.4751 21 7 14.4627 -2.2038 -4.8419 22 14 16.2164 -4.3374 -4.7031 23 1 16.2457 -4.9854 -6.0390 24 1 17.3284 -3.3581 -4.6035 25 1 16.3712 -5.3710 -3.6481 26 6 11.5148 -3.7692 -2.5292 27 6 10.3538 -3.0963 -2.2862 28 7 4.3996 0.2270 0.0021 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.9158 3.4287 -0.0014 33 1 7.6624 0.3972 0.5178 34 1 6.6762 -1.0846 0.5178 35 1 6.7500 -0.0651 -2.1149 36 1 8.1947 -1.1030 -3.6297 37 1 10.3734 -0.9648 -4.9308 38 1 12.4629 -2.1487 -5.3828 39 1 15.2175 -1.7360 -5.2323 40 1 11.8346 -4.5557 -1.8618 41 1 9.7540 -3.3506 -1.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364188294.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:18 Heat of formation + Delta-G solvation = -77.628851 kcal Electronic energy + Delta-G solvation = -27698.137836 eV Core-core repulsion = 23351.570106 eV Total energy + Delta-G solvation = -4346.567730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.76583 -41.44664 -41.36422 -39.26012 -37.68414 -36.63459 -36.15838 -35.81325 -34.67209 -32.29145 -31.41992 -30.63202 -29.06908 -28.17053 -26.45243 -25.50900 -23.51397 -22.97269 -22.62931 -21.96561 -21.70945 -19.81845 -19.40409 -19.11854 -18.54400 -18.15923 -18.00358 -17.52929 -17.31595 -17.02468 -16.62628 -16.19620 -15.87500 -15.63694 -15.34261 -14.97690 -14.66259 -14.49133 -14.43804 -14.39841 -14.08042 -13.89812 -13.53754 -13.19136 -13.07909 -12.82276 -12.75248 -12.69750 -12.45122 -12.16863 -11.97646 -11.89909 -11.82483 -11.37036 -11.23960 -11.04982 -10.65234 -10.41141 -10.27556 -9.41101 -8.65760 -8.46200 -6.28299 -0.28202 0.38939 0.88583 1.18951 1.20692 1.42007 1.45595 1.49942 1.56475 1.68520 1.93170 2.18056 2.27528 2.56353 2.85151 3.33663 3.47913 3.58041 3.73434 4.10785 4.22485 4.25716 4.30834 4.37751 4.44865 4.50980 4.59092 4.63891 4.71687 4.97846 5.11360 5.14791 5.18427 5.22935 5.36158 5.48041 5.72407 5.81631 6.05892 6.12587 6.13523 6.24943 6.44749 6.52263 6.73243 7.01373 7.04988 7.07373 7.59704 8.46347 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.033172 B = 0.001596 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.883328 B =17535.942995 C =17744.190221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.558 3.442 4 O -0.517 6.517 5 C -0.097 4.097 6 C 0.075 3.925 7 O -0.180 6.180 8 C 0.190 3.810 9 C 0.242 3.758 10 N -0.729 5.729 11 C 0.703 3.297 12 O -0.614 6.614 13 N -0.656 5.656 14 C 0.042 3.958 15 C -0.120 4.120 16 C -0.158 4.158 17 C 0.064 3.936 18 C -0.499 4.499 19 H 0.071 0.929 20 C 0.028 3.972 21 N -0.842 5.842 22 Si 0.987 3.013 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.263 1.263 26 C -0.218 4.218 27 C -0.097 4.097 28 N -0.442 5.442 29 H 0.070 0.930 30 H 0.129 0.871 31 H 0.070 0.930 32 H 0.276 0.724 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.412 0.588 36 H 0.415 0.585 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.284 0.716 40 H 0.095 0.905 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.237 10.928 6.263 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.403 3.597 4 O -0.407 6.407 5 C -0.215 4.215 6 C 0.000 4.000 7 O -0.064 6.064 8 C -0.021 4.021 9 C 0.117 3.883 10 N -0.389 5.389 11 C 0.404 3.596 12 O -0.493 6.493 13 N -0.304 5.304 14 C -0.052 4.052 15 C -0.140 4.140 16 C -0.178 4.178 17 C 0.062 3.938 18 C -0.530 4.530 19 H 0.089 0.911 20 C -0.184 4.184 21 N -0.470 5.470 22 Si 0.808 3.192 23 H -0.185 1.185 24 H -0.195 1.195 25 H -0.188 1.188 26 C -0.238 4.238 27 C -0.117 4.117 28 N -0.173 5.173 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.089 0.911 32 H 0.291 0.709 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.248 0.752 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -22.928 10.388 7.025 26.133 hybrid contribution 0.134 0.648 -0.657 0.932 sum -22.794 11.036 6.368 26.113 Atomic orbital electron populations 1.23676 0.73573 1.06032 1.03186 1.86663 1.25673 1.31337 1.83159 1.19469 0.86288 0.81923 0.72038 1.90889 1.65962 1.36281 1.47562 1.20780 0.92618 0.90758 1.17335 1.26179 0.78477 1.01683 0.93680 1.84533 1.29003 1.25005 1.67880 1.26003 0.95263 0.78680 1.02109 1.19366 0.87528 0.97513 0.83852 1.44697 1.28149 1.57430 1.08574 1.15900 0.80985 0.79331 0.83417 1.90925 1.56486 1.57577 1.44333 1.41828 1.23013 1.59135 1.06383 1.17057 0.90118 0.97891 1.00170 1.20526 0.94845 1.00528 0.98090 1.21148 0.95544 1.00183 1.00908 1.18041 0.92451 0.93075 0.90254 1.19712 0.97484 0.97557 1.38232 0.91051 1.26698 1.04137 0.95447 0.92077 1.69829 1.33578 1.11039 1.32598 0.85130 0.75987 0.78546 0.79550 1.18508 1.19472 1.18756 1.20925 0.98844 1.04889 0.99133 1.20549 0.97125 0.94970 0.99060 1.70890 0.99636 1.31627 1.15128 0.91162 0.85255 0.91111 0.70870 0.87176 0.86915 0.75155 0.74802 0.85738 0.86409 0.90576 0.88658 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.57 113.37 1.20 1.49 16 2 O -0.35 -6.59 10.58 -56.84 -0.60 -7.19 16 3 C 0.56 10.65 7.96 70.20 0.56 11.21 16 4 O -0.52 -10.63 16.68 19.74 0.33 -10.30 16 5 C -0.10 -1.70 7.04 40.38 0.28 -1.42 16 6 C 0.07 0.82 11.95 67.34 0.80 1.62 16 7 O -0.18 -2.46 10.72 0.53 0.01 -2.46 16 8 C 0.19 3.19 7.67 88.39 0.68 3.87 16 9 C 0.24 4.40 6.30 85.63 0.54 4.94 16 10 N -0.73 -15.11 5.55 -482.28 -2.68 -17.79 16 11 C 0.70 22.02 8.40 179.05 1.50 23.52 16 12 O -0.61 -24.85 13.76 -3.98 -0.05 -24.90 16 13 N -0.66 -20.66 5.31 -316.78 -1.68 -22.35 16 14 C 0.04 1.77 6.31 38.57 0.24 2.01 16 15 C -0.12 -5.24 9.90 22.13 0.22 -5.02 16 16 C -0.16 -8.16 8.61 22.48 0.19 -7.96 16 17 C 0.06 3.53 5.55 -21.28 -0.12 3.42 16 18 C -0.50 -27.51 9.02 23.39 0.21 -27.30 16 19 H 0.07 3.81 7.85 -2.91 -0.02 3.79 16 20 C 0.03 1.44 5.42 85.24 0.46 1.90 16 21 N -0.84 -44.48 10.60 21.82 0.23 -44.25 16 22 Si 0.99 39.30 29.56 68.60 2.03 41.33 16 23 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 24 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 26 C -0.22 -11.29 9.74 22.48 0.22 -11.07 16 27 C -0.10 -4.60 8.61 22.13 0.19 -4.41 16 28 N -0.44 -8.94 11.36 -293.09 -3.33 -12.27 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.13 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.28 0.62 8.06 -2.91 -0.02 0.59 16 33 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.41 6.28 8.48 -92.71 -0.79 5.49 16 36 H 0.41 9.49 8.83 -92.71 -0.82 8.68 16 37 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 38 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 39 H 0.28 13.61 8.30 -92.71 -0.77 12.84 16 40 H 0.10 4.77 8.06 -2.91 -0.02 4.74 16 41 H 0.11 5.23 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -74.54 369.16 0.95 -73.59 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: -0.48 Total: 29.78 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: 7.19 Total: -3.19 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -7.46 Total: -96.66 kcal Atomic # 8 Polarization: -44.53 SS G_CDS: -0.32 Total: -44.85 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -74.54 0.95 -73.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364188294.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.041 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds