Wall clock time and date at job start Wed Apr 1 2020 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34762 * 117.00365 * 2 1 4 4 O 1.21540 * 119.99784 * 0.02562 * 3 2 1 5 5 C 1.47235 * 120.00217 * 180.02562 * 3 2 1 6 6 C 1.36491 * 127.20239 * 0.02562 * 5 3 2 7 7 O 1.33623 * 108.39006 * 179.97438 * 6 5 3 8 8 C 1.34223 * 110.91859 * 0.02562 * 7 6 5 9 9 C 1.50708 * 125.42465 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.46682 * 270.01825 * 9 8 7 11 11 C 1.34779 * 119.99792 * 180.27476 * 10 9 8 12 12 O 1.21576 * 119.99814 * 359.72858 * 11 10 9 13 13 N 1.34775 * 119.99962 * 179.72606 * 11 10 9 14 14 C 1.39246 * 120.00085 * 174.85521 * 13 11 10 15 15 C 1.39683 * 119.57738 * 185.40408 * 14 13 11 16 16 C 1.38653 * 119.49170 * 179.72948 * 15 14 13 17 17 C 1.38354 * 118.67358 * 0.53837 * 16 15 14 18 18 C 1.40570 * 119.12776 * 359.72784 * 17 16 15 19 19 C 1.41335 * 119.78513 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99937 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.30737 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99678 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46903 * 119.99894 * 23 21 19 26 26 H 1.48502 * 109.46642 * 239.99488 * 23 21 19 27 27 N 1.31906 * 119.57244 * 5.68412 * 14 13 11 28 28 C 1.34157 * 109.14631 * 0.26326 * 8 7 6 29 29 H 1.09005 * 109.46925 * 299.99917 * 1 2 3 30 30 H 1.08994 * 109.47029 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47313 * 180.02562 * 1 2 3 32 32 H 1.08003 * 125.80615 * 359.96350 * 6 5 3 33 33 H 1.08997 * 109.46726 * 150.02506 * 9 8 7 34 34 H 1.08989 * 109.47234 * 30.02086 * 9 8 7 35 35 H 0.97003 * 120.00379 * 0.02562 * 10 9 8 36 36 H 0.97004 * 120.00098 * 354.86296 * 13 11 10 37 37 H 1.07993 * 120.25328 * 359.97438 * 15 14 13 38 38 H 1.08006 * 120.66006 * 180.24226 * 16 15 14 39 39 H 1.07994 * 120.43461 * 179.74688 * 17 16 15 40 40 H 0.97005 * 119.99927 * 180.02562 * 22 21 19 41 41 H 1.07996 * 127.02734 * 179.73802 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5342 1.2777 -0.0006 6 6 4.4152 0.2352 -0.0016 7 8 5.6558 0.7317 -0.0024 8 6 5.6349 2.0737 -0.0013 9 6 6.8492 2.9663 -0.0023 10 7 7.2448 3.2540 1.3786 11 6 8.3095 4.0431 1.6241 12 8 8.9446 4.5120 0.6995 13 7 8.6701 4.3123 2.8945 14 6 9.8308 5.0379 3.1499 15 6 10.2572 5.2149 4.4682 16 6 11.4163 5.9329 4.7202 17 6 12.1134 6.4650 3.6501 18 6 11.6296 6.2568 2.3467 19 6 12.3311 6.7937 1.2434 20 1 13.2353 7.3621 1.4032 21 6 11.8535 6.5886 -0.0569 22 7 10.7591 5.9000 -0.2503 23 14 12.7811 7.2976 -1.5151 24 1 13.9791 8.0295 -1.0313 25 1 13.2040 6.1954 -2.4160 26 1 11.8969 8.2318 -2.2572 27 7 10.5106 5.5538 2.1441 28 6 4.3608 2.4940 0.0060 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 4.1541 -0.8128 -0.0016 33 1 6.6140 3.8991 -0.5147 34 1 7.6682 2.4650 -0.5179 35 1 6.7382 2.8797 2.1163 36 1 8.1211 4.0005 3.6309 37 1 9.6905 4.7924 5.2847 38 1 11.7653 6.0780 5.7319 39 1 13.0174 7.0326 3.8139 40 1 10.4285 5.7576 -1.1510 41 1 4.0133 3.5165 0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365076033.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:27 Heat of formation + Delta-G solvation = -26.057677 kcal Electronic energy + Delta-G solvation = -28500.296212 eV Core-core repulsion = 24155.964776 eV Total energy + Delta-G solvation = -4344.331436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.99603 -40.46004 -39.48270 -37.73836 -36.74930 -34.86661 -33.93748 -33.28993 -32.97909 -30.94427 -30.24613 -28.93395 -28.18294 -26.09140 -25.28194 -24.32451 -22.09238 -21.47233 -21.17819 -20.54675 -19.88745 -18.44514 -17.89122 -17.46437 -16.99072 -16.88736 -16.43151 -16.36675 -16.08845 -14.98760 -14.98408 -14.51563 -14.39630 -14.20098 -13.75323 -13.63720 -13.58059 -13.43700 -13.25819 -12.87668 -12.80749 -12.53351 -12.27677 -11.90684 -11.83496 -11.21244 -11.15155 -10.99250 -10.91436 -10.60790 -10.44674 -10.25682 -9.88955 -9.70578 -9.35667 -9.01880 -8.98785 -8.61658 -7.93237 -7.20481 -6.93285 -6.09213 -4.36428 0.77990 1.49917 2.20118 2.46273 2.70382 2.85259 3.14311 3.20069 3.23421 3.29267 3.32895 4.09357 4.14645 4.17597 4.22126 4.60754 4.69979 4.76274 4.78240 4.96608 4.98172 5.15445 5.17227 5.41564 5.54252 5.68433 5.91805 5.96828 6.07096 6.11767 6.49072 6.60631 6.64537 6.75400 6.83474 6.87667 7.24846 7.33996 7.39404 7.63709 7.73784 7.83994 8.18882 8.30875 8.63281 8.81380 9.08631 9.53643 10.28587 10.51964 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.002196 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.663545 B =12746.666476 C =13964.734931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.360 6.360 3 C 0.538 3.462 4 O -0.503 6.503 5 C -0.237 4.237 6 C 0.064 3.936 7 O -0.162 6.162 8 C -0.018 4.018 9 C 0.226 3.774 10 N -0.760 5.760 11 C 0.667 3.333 12 O -0.460 6.460 13 N -0.671 5.671 14 C 0.386 3.614 15 C -0.358 4.358 16 C -0.036 4.036 17 C -0.306 4.306 18 C 0.271 3.729 19 C -0.425 4.425 20 H 0.082 0.918 21 C 0.056 3.944 22 N -0.649 5.649 23 Si 0.894 3.106 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 N -0.471 5.471 28 C -0.136 4.136 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.222 0.778 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.388 0.612 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.271 0.729 41 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.251 -13.762 -0.690 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.277 6.277 3 C 0.383 3.617 4 O -0.391 6.391 5 C -0.239 4.239 6 C -0.008 4.008 7 O -0.056 6.056 8 C -0.066 4.066 9 C 0.102 3.898 10 N -0.421 5.421 11 C 0.365 3.635 12 O -0.324 6.324 13 N -0.319 5.319 14 C 0.146 3.854 15 C -0.384 4.384 16 C -0.060 4.060 17 C -0.329 4.329 18 C 0.146 3.854 19 C -0.455 4.455 20 H 0.101 0.899 21 C -0.173 4.173 22 N -0.268 5.268 23 Si 0.719 3.281 24 H -0.186 1.186 25 H -0.201 1.201 26 H -0.201 1.201 27 N -0.189 5.189 28 C -0.156 4.156 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.238 0.762 33 H 0.118 0.882 34 H 0.104 0.896 35 H 0.220 0.780 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -16.995 -13.356 -2.706 21.784 hybrid contribution -0.487 0.039 1.063 1.170 sum -17.482 -13.317 -1.643 22.038 Atomic orbital electron populations 1.23293 0.75591 1.03840 1.02824 1.86522 1.23880 1.32585 1.84714 1.20019 0.87533 0.81478 0.72656 1.90872 1.66484 1.35964 1.45822 1.20508 0.90400 0.94757 1.18252 1.24744 0.80340 0.99454 0.96242 1.83841 1.30041 1.21821 1.69896 1.22440 0.96840 0.80247 1.07120 1.19346 0.90415 0.95442 0.84638 1.45323 1.33735 1.56169 1.06914 1.16347 0.81357 0.80994 0.84790 1.91407 1.50347 1.49757 1.40847 1.42510 1.25719 1.57222 1.06488 1.18330 0.86239 0.90816 0.89991 1.20434 1.04813 1.19054 0.94062 1.20545 0.93652 0.94861 0.96928 1.21623 1.04385 1.12834 0.94102 1.18394 0.87892 0.88232 0.90917 1.19610 1.07985 1.28042 0.89887 0.89949 1.26190 0.95405 0.95490 1.00197 1.70353 1.13487 1.20816 1.22130 0.86484 0.80522 0.79432 0.81673 1.18649 1.20105 1.20111 1.68679 1.08225 1.13788 1.28254 1.22566 0.90278 0.98891 1.03823 0.91702 0.91710 0.87840 0.76183 0.88186 0.89615 0.77984 0.77136 0.89150 0.88632 0.88584 0.91719 0.81652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.29 16 2 O -0.36 -3.07 10.42 -40.66 -0.42 -3.49 16 3 C 0.54 5.88 7.95 34.39 0.27 6.15 16 4 O -0.50 -6.95 16.77 -19.30 -0.32 -7.27 16 5 C -0.24 -2.38 6.31 -103.30 -0.65 -3.04 16 6 C 0.06 0.50 11.94 30.10 0.36 0.86 16 7 O -0.16 -1.60 10.52 7.71 0.08 -1.52 16 8 C -0.02 -0.19 6.65 -35.74 -0.24 -0.43 16 9 C 0.23 2.86 6.19 -5.19 -0.03 2.83 16 10 N -0.76 -10.74 5.55 -66.42 -0.37 -11.11 16 11 C 0.67 13.24 8.52 -86.92 -0.74 12.50 16 12 O -0.46 -11.40 12.11 5.30 0.06 -11.33 16 13 N -0.67 -13.11 5.39 -15.79 -0.09 -13.20 16 14 C 0.39 9.41 7.43 -154.99 -1.15 8.26 16 15 C -0.36 -8.03 9.96 -38.89 -0.39 -8.41 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.31 -7.74 9.83 -38.66 -0.38 -8.12 16 18 C 0.27 7.63 6.55 -85.00 -0.56 7.07 16 19 C -0.42 -11.72 9.14 -37.73 -0.34 -12.06 16 20 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 21 C 0.06 1.49 5.50 -17.35 -0.10 1.40 16 22 N -0.65 -17.94 8.99 55.55 0.50 -17.44 16 23 Si 0.89 19.28 29.56 -169.99 -5.02 14.26 16 24 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 N -0.47 -13.22 5.74 -10.26 -0.06 -13.28 16 28 C -0.14 -1.45 10.90 -37.44 -0.41 -1.86 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.22 0.83 8.06 -52.48 -0.42 0.40 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.09 1.16 8.14 -51.94 -0.42 0.74 16 35 H 0.39 4.39 8.48 -40.82 -0.35 4.04 16 36 H 0.40 5.92 8.71 -40.82 -0.36 5.57 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 41 H 0.17 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -35.84 368.26 -8.25 -44.09 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -4.48 Total: 9.53 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -3.68 Total: 5.21 kcal Atomic # 7 Polarization: -55.02 SS G_CDS: -0.01 Total: -55.03 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.60 Total: -23.62 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.02 Total: 14.26 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.84 -8.25 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365076033.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.037 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds