Wall clock time and date at job start Wed Apr 1 2020 03:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34726 * 116.99645 * 2 1 4 4 O 1.21477 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.47629 * 119.99481 * 179.97438 * 3 2 1 6 6 C 1.40960 * 126.27504 * 180.28100 * 5 3 2 7 7 C 1.37035 * 105.45977 * 180.14694 * 6 5 3 8 8 C 1.47181 * 126.64028 * 179.86131 * 7 6 5 9 9 O 1.21635 * 119.99935 * 346.34504 * 8 7 6 10 10 N 1.34773 * 119.99875 * 166.34685 * 8 7 6 11 11 C 1.39833 * 119.99954 * 177.99397 * 10 8 7 12 12 C 1.38985 * 120.03805 * 29.17948 * 11 10 8 13 13 C 1.38155 * 120.06517 * 179.97438 * 12 11 10 14 14 C 1.38172 * 120.13947 * 359.78957 * 13 12 11 15 15 C 1.38912 * 120.07636 * 0.46685 * 14 13 12 16 16 O 1.35751 * 120.03596 * 179.79260 * 15 14 13 17 17 C 1.34831 * 117.00334 * 173.77454 * 16 15 14 18 18 H 1.08001 * 119.99450 * 5.14867 * 17 16 15 19 19 C 1.38650 * 120.00053 * 185.14106 * 17 16 15 20 20 N 1.31555 * 119.99953 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47081 * 89.99834 * 21 19 17 23 23 H 1.48502 * 109.47299 * 210.00019 * 21 19 17 24 24 H 1.48502 * 109.47073 * 330.00477 * 21 19 17 25 25 C 1.38729 * 120.03963 * 209.16306 * 11 10 8 26 26 N 1.36761 * 106.71681 * 359.60264 * 7 6 5 27 27 C 1.46505 * 125.05879 * 180.22839 * 26 7 6 28 28 N 1.28464 * 109.88351 * 0.26065 * 26 7 6 29 29 H 1.08996 * 109.46942 * 300.00473 * 1 2 3 30 30 H 1.09001 * 109.46889 * 59.99672 * 1 2 3 31 31 H 1.08994 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.07999 * 127.26794 * 0.04377 * 6 5 3 33 33 H 0.96996 * 120.00002 * 357.98977 * 10 8 7 34 34 H 1.08004 * 119.96788 * 359.97438 * 12 11 10 35 35 H 1.08001 * 119.93153 * 180.02562 * 13 12 11 36 36 H 1.07998 * 119.95977 * 180.22818 * 14 13 12 37 37 H 0.97003 * 119.99706 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.07213 * 0.03393 * 25 11 10 39 39 H 1.08998 * 109.47060 * 87.24460 * 27 26 7 40 40 H 1.09002 * 109.46764 * 207.24167 * 27 26 7 41 41 H 1.08997 * 109.46764 * 327.23939 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3113 2.4561 0.0062 7 6 5.6159 2.0369 0.0010 8 6 6.8135 2.8925 0.0010 9 8 6.7126 4.0798 -0.2429 10 7 8.0219 2.3603 0.2712 11 6 9.1651 3.1645 0.2300 12 6 9.0719 4.5213 0.5164 13 6 10.2011 5.3163 0.4764 14 6 11.4268 4.7648 0.1560 15 6 11.5257 3.4104 -0.1365 16 8 12.7297 2.8703 -0.4553 17 6 12.7803 1.5309 -0.6015 18 1 11.8733 0.9472 -0.5476 19 6 13.9968 0.9031 -0.8213 20 7 14.0462 -0.4038 -0.9644 21 14 15.5656 1.9129 -0.9154 22 1 16.1566 2.0368 0.4413 23 1 16.5341 1.2399 -1.8178 24 1 15.2530 3.2648 -1.4445 25 6 10.3936 2.6089 -0.0965 26 7 5.5897 0.6695 0.0018 27 6 6.7726 -0.1949 0.0022 28 7 4.3735 0.2558 0.0016 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9516 3.4744 0.0116 33 1 8.0986 1.4194 0.4943 34 1 8.1158 4.9546 0.7705 35 1 10.1263 6.3703 0.6998 36 1 12.3083 5.3882 0.1292 37 1 14.8974 -0.8430 -1.1178 38 1 10.4687 1.5549 -0.3198 39 1 7.0952 -0.3688 1.0287 40 1 6.5267 -1.1472 -0.4677 41 1 7.5757 0.2882 -0.5543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411269902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:10 Heat of formation + Delta-G solvation = -13.489156 kcal Electronic energy + Delta-G solvation = -28655.360779 eV Core-core repulsion = 24311.574355 eV Total energy + Delta-G solvation = -4343.786424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.19401 -40.54554 -40.25091 -38.88082 -36.78327 -36.71537 -35.06674 -33.68446 -32.46752 -31.68075 -29.61541 -29.10315 -28.76508 -27.50102 -25.39325 -24.33030 -23.68922 -22.02210 -21.62967 -21.27022 -20.25287 -18.81635 -17.97478 -17.78485 -17.53797 -17.11471 -16.64944 -16.42333 -15.98784 -15.91930 -15.35527 -14.95585 -14.68658 -14.52635 -14.09644 -13.94912 -13.83481 -13.79981 -13.71356 -13.25639 -13.15901 -12.91454 -12.47671 -12.44501 -12.27612 -11.88897 -11.69660 -11.37333 -11.13841 -11.10862 -11.01670 -10.91932 -10.39073 -10.23861 -9.86176 -9.74301 -9.63061 -9.60849 -8.95313 -7.97640 -7.43479 -6.52883 -4.20490 0.73294 1.02511 1.70293 1.85367 2.16194 2.31221 2.70392 2.82374 2.95202 3.15829 3.19778 3.34165 3.73745 4.08198 4.15318 4.38214 4.42849 4.57301 4.71733 4.74561 4.76726 4.85399 4.93528 4.96429 4.99290 5.10887 5.23253 5.48817 5.74067 5.79554 5.81189 5.92713 5.94271 5.98359 6.05953 6.34472 6.67062 6.69866 7.03289 7.09769 7.13356 7.33855 7.46530 7.47666 7.63658 7.85453 7.92817 8.82664 9.44081 10.54513 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002212 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.356857 B =12655.342959 C =13987.778585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.344 6.344 3 C 0.560 3.440 4 O -0.495 6.495 5 C -0.019 4.019 6 C -0.089 4.089 7 C -0.037 4.037 8 C 0.589 3.411 9 O -0.492 6.492 10 N -0.665 5.665 11 C 0.172 3.828 12 C -0.202 4.202 13 C -0.063 4.063 14 C -0.196 4.196 15 C 0.175 3.825 16 O -0.214 6.214 17 C -0.391 4.391 18 H 0.104 0.896 19 C 0.065 3.935 20 N -0.879 5.879 21 Si 0.905 3.095 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.245 4.245 26 N -0.257 5.257 27 C 0.060 3.940 28 N -0.202 5.202 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.180 0.820 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.280 0.720 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.423 -0.765 3.406 19.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.259 6.259 3 C 0.402 3.598 4 O -0.380 6.380 5 C -0.174 4.174 6 C -0.117 4.117 7 C -0.162 4.162 8 C 0.374 3.626 9 O -0.365 6.365 10 N -0.312 5.312 11 C 0.079 3.921 12 C -0.222 4.222 13 C -0.082 4.082 14 C -0.216 4.216 15 C 0.122 3.878 16 O -0.119 6.119 17 C -0.467 4.467 18 H 0.122 0.878 19 C -0.139 4.139 20 N -0.516 5.516 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.267 4.267 26 N -0.051 5.051 27 C -0.079 4.079 28 N -0.043 5.043 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.197 0.803 33 H 0.244 0.756 34 H 0.152 0.848 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.136 0.864 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.263 -0.933 3.135 19.539 hybrid contribution 0.561 0.302 0.001 0.637 sum -18.702 -0.631 3.136 18.973 Atomic orbital electron populations 1.23353 0.75593 1.04029 1.02813 1.86635 1.23633 1.31765 1.83882 1.19427 0.85958 0.81796 0.72633 1.90886 1.65289 1.36038 1.45807 1.20537 0.91232 0.90741 1.14854 1.21824 0.88926 1.00016 1.00944 1.21422 0.96444 0.83701 1.14607 1.16850 0.81218 0.86875 0.77633 1.90853 1.84791 1.14033 1.46780 1.43764 1.05646 1.13608 1.68199 1.17421 0.84548 0.90856 0.99228 1.20923 0.99761 0.92352 1.09200 1.20598 0.91324 0.98775 0.97518 1.20315 0.98321 0.93045 1.09917 1.18764 0.85094 0.91914 0.92005 1.83613 1.26645 1.24595 1.77018 1.20690 0.97082 0.77926 1.50992 0.87823 1.24459 0.98607 0.95311 0.95531 1.69630 1.27702 1.07661 1.46651 0.86179 0.81231 0.80853 0.78670 1.19823 1.20761 1.18273 1.20845 0.91223 1.01811 1.12774 1.46038 1.05641 1.04821 1.48616 1.22728 0.83130 0.96163 1.05913 1.73682 0.89421 1.26402 1.14801 0.91611 0.91591 0.87742 0.80253 0.75579 0.84839 0.86186 0.86227 0.90970 0.84626 0.87840 0.86401 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.57 101.05 1.07 1.30 16 2 O -0.34 -3.58 10.57 -40.56 -0.43 -4.01 16 3 C 0.56 6.74 7.97 34.56 0.28 7.02 16 4 O -0.50 -6.72 16.70 -19.25 -0.32 -7.04 16 5 C -0.02 -0.24 7.13 -82.93 -0.59 -0.83 16 6 C -0.09 -1.09 10.58 -38.99 -0.41 -1.50 16 7 C -0.04 -0.46 6.88 -82.47 -0.57 -1.02 16 8 C 0.59 8.31 7.59 -12.63 -0.10 8.22 16 9 O -0.49 -8.33 14.07 5.25 0.07 -8.26 16 10 N -0.66 -9.05 4.86 -10.92 -0.05 -9.10 16 11 C 0.17 2.96 6.39 -83.75 -0.53 2.43 16 12 C -0.20 -3.49 8.73 -39.34 -0.34 -3.83 16 13 C -0.06 -1.06 10.03 -39.64 -0.40 -1.45 16 14 C -0.20 -3.69 9.99 -39.36 -0.39 -4.08 16 15 C 0.18 3.78 6.64 -39.13 -0.26 3.52 16 16 O -0.21 -5.31 8.58 0.04 0.00 -5.31 16 17 C -0.39 -10.29 9.95 30.88 0.31 -9.98 16 18 H 0.10 2.71 5.44 -52.49 -0.29 2.43 16 19 C 0.06 1.71 5.49 -17.52 -0.10 1.62 16 20 N -0.88 -23.96 13.96 55.48 0.77 -23.19 16 21 Si 0.91 20.72 28.62 -169.99 -4.86 15.85 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 25 C -0.25 -4.78 9.07 -39.20 -0.36 -5.14 16 26 N -0.26 -2.68 3.75 -64.19 -0.24 -2.92 16 27 C 0.06 0.40 9.69 59.85 0.58 0.98 16 28 N -0.20 -2.36 11.97 33.32 0.40 -1.96 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 2.04 8.06 -52.49 -0.42 1.61 16 33 H 0.40 4.26 5.10 -40.82 -0.21 4.06 16 34 H 0.13 2.28 5.84 -52.48 -0.31 1.97 16 35 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 37 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.14 2.65 5.64 -52.48 -0.30 2.35 16 39 H 0.10 0.48 8.03 -51.93 -0.42 0.07 16 40 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.73 6.12 -51.93 -0.32 0.41 16 LS Contribution 362.31 15.07 5.46 5.46 Total: -1.00 -32.80 362.31 -4.94 -37.75 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -3.93 Total: 5.47 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.82 Total: -2.75 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.88 Total: -37.17 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.68 Total: -24.61 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.80 -4.94 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411269902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.257 kcal (2) G-P(sol) polarization free energy of solvation -32.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds