Wall clock time and date at job start Wed Apr 1 2020 03:04:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34726 * 116.99645 * 2 1 4 4 O 1.21477 * 120.00144 * 359.97438 * 3 2 1 5 5 C 1.47629 * 119.99481 * 179.97438 * 3 2 1 6 6 C 1.40960 * 126.27504 * 180.28100 * 5 3 2 7 7 C 1.37035 * 105.45977 * 180.14694 * 6 5 3 8 8 C 1.47181 * 126.64028 * 179.86131 * 7 6 5 9 9 O 1.21635 * 119.99935 * 346.34504 * 8 7 6 10 10 N 1.34773 * 119.99875 * 166.34685 * 8 7 6 11 11 C 1.39833 * 119.99954 * 177.99397 * 10 8 7 12 12 C 1.38985 * 120.03805 * 29.17948 * 11 10 8 13 13 C 1.38155 * 120.06517 * 179.97438 * 12 11 10 14 14 C 1.38172 * 120.13947 * 359.78957 * 13 12 11 15 15 C 1.38912 * 120.07636 * 0.46685 * 14 13 12 16 16 O 1.35751 * 120.03596 * 179.79260 * 15 14 13 17 17 C 1.34831 * 117.00334 * 173.77454 * 16 15 14 18 18 H 1.08001 * 119.99450 * 5.14867 * 17 16 15 19 19 C 1.38650 * 120.00053 * 185.14106 * 17 16 15 20 20 N 1.31555 * 119.99953 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00049 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47081 * 89.99834 * 21 19 17 23 23 H 1.48502 * 109.47299 * 210.00019 * 21 19 17 24 24 H 1.48502 * 109.47073 * 330.00477 * 21 19 17 25 25 C 1.38729 * 120.03963 * 209.16306 * 11 10 8 26 26 N 1.36761 * 106.71681 * 359.60264 * 7 6 5 27 27 C 1.46505 * 125.05879 * 180.22839 * 26 7 6 28 28 N 1.28464 * 109.88351 * 0.26065 * 26 7 6 29 29 H 1.08996 * 109.46942 * 300.00473 * 1 2 3 30 30 H 1.09001 * 109.46889 * 59.99672 * 1 2 3 31 31 H 1.08994 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.07999 * 127.26794 * 0.04377 * 6 5 3 33 33 H 0.96996 * 120.00002 * 357.98977 * 10 8 7 34 34 H 1.08004 * 119.96788 * 359.97438 * 12 11 10 35 35 H 1.08001 * 119.93153 * 180.02562 * 13 12 11 36 36 H 1.07998 * 119.95977 * 180.22818 * 14 13 12 37 37 H 0.97003 * 119.99706 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.07213 * 0.03393 * 25 11 10 39 39 H 1.08998 * 109.47060 * 87.24460 * 27 26 7 40 40 H 1.09002 * 109.46764 * 207.24167 * 27 26 7 41 41 H 1.08997 * 109.46764 * 327.23939 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0636 1.2005 0.0000 4 8 1.4020 2.2192 -0.0005 5 6 3.5379 1.2777 0.0006 6 6 4.3113 2.4561 0.0062 7 6 5.6159 2.0369 0.0010 8 6 6.8135 2.8925 0.0010 9 8 6.7126 4.0798 -0.2429 10 7 8.0219 2.3603 0.2712 11 6 9.1651 3.1645 0.2300 12 6 9.0719 4.5213 0.5164 13 6 10.2011 5.3163 0.4764 14 6 11.4268 4.7648 0.1560 15 6 11.5257 3.4104 -0.1365 16 8 12.7297 2.8703 -0.4553 17 6 12.7803 1.5309 -0.6015 18 1 11.8733 0.9472 -0.5476 19 6 13.9968 0.9031 -0.8213 20 7 14.0462 -0.4038 -0.9644 21 14 15.5656 1.9129 -0.9154 22 1 16.1566 2.0368 0.4413 23 1 16.5341 1.2399 -1.8178 24 1 15.2530 3.2648 -1.4445 25 6 10.3936 2.6089 -0.0965 26 7 5.5897 0.6695 0.0018 27 6 6.7726 -0.1949 0.0022 28 7 4.3735 0.2558 0.0016 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.9516 3.4744 0.0116 33 1 8.0986 1.4194 0.4943 34 1 8.1158 4.9546 0.7705 35 1 10.1263 6.3703 0.6998 36 1 12.3083 5.3882 0.1292 37 1 14.8974 -0.8430 -1.1178 38 1 10.4687 1.5549 -0.3198 39 1 7.0952 -0.3688 1.0287 40 1 6.5267 -1.1472 -0.4677 41 1 7.5757 0.2882 -0.5543 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411269902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:09 Heat of formation + Delta-G solvation = -34.671748 kcal Electronic energy + Delta-G solvation = -28656.279325 eV Core-core repulsion = 24311.574355 eV Total energy + Delta-G solvation = -4344.704970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.11314 -41.70248 -41.26862 -40.42477 -38.24804 -37.62287 -36.25404 -34.67310 -34.35153 -32.71120 -31.07109 -30.36087 -29.67451 -28.15311 -27.22513 -25.45882 -24.55555 -23.49496 -22.89021 -22.29889 -21.34387 -20.10413 -19.49384 -19.32004 -18.38830 -17.99055 -17.46920 -17.36715 -17.29790 -17.14731 -16.78297 -16.26738 -16.11229 -15.67902 -15.61693 -15.36507 -15.04069 -14.76097 -14.59582 -14.49162 -14.21574 -14.02393 -13.86264 -13.63654 -13.32895 -13.06156 -13.00081 -12.72586 -12.55071 -12.41857 -12.08896 -12.01470 -11.85952 -11.62475 -11.40133 -11.17629 -10.83306 -10.70246 -10.53187 -9.43857 -8.98085 -8.47948 -6.19744 -0.26820 0.05499 0.47520 0.64916 0.90925 1.35344 1.37749 1.42452 1.54536 1.70153 1.77273 1.89803 2.30212 2.77779 2.88043 3.03772 3.11342 3.15989 3.70019 3.90022 4.03870 4.09752 4.10553 4.23216 4.29898 4.32113 4.35568 4.37947 4.45619 4.54946 4.59054 4.72095 4.88349 4.91797 5.11824 5.13705 5.27813 5.30859 5.41697 5.63520 5.75762 5.88431 6.10828 6.18965 6.26767 6.58992 6.69885 6.87335 7.60403 8.62562 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.002212 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.356857 B =12655.342959 C =13987.778585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.562 3.438 4 O -0.517 6.517 5 C -0.033 4.033 6 C -0.091 4.091 7 C -0.045 4.045 8 C 0.597 3.403 9 O -0.521 6.521 10 N -0.655 5.655 11 C 0.176 3.824 12 C -0.197 4.197 13 C -0.053 4.053 14 C -0.198 4.198 15 C 0.141 3.859 16 O -0.240 6.240 17 C -0.396 4.396 18 H 0.091 0.909 19 C 0.014 3.986 20 N -0.918 5.918 21 Si 0.962 3.038 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.264 1.264 25 C -0.249 4.249 26 N -0.244 5.244 27 C 0.046 3.954 28 N -0.199 5.199 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.135 0.865 32 H 0.183 0.817 33 H 0.419 0.581 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.133 0.867 37 H 0.284 0.716 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.414 -0.190 3.995 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.405 3.595 4 O -0.404 6.404 5 C -0.186 4.186 6 C -0.119 4.119 7 C -0.170 4.170 8 C 0.383 3.617 9 O -0.395 6.395 10 N -0.304 5.304 11 C 0.082 3.918 12 C -0.218 4.218 13 C -0.071 4.071 14 C -0.218 4.218 15 C 0.091 3.909 16 O -0.147 6.147 17 C -0.472 4.472 18 H 0.108 0.892 19 C -0.185 4.185 20 N -0.558 5.558 21 Si 0.785 3.215 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.188 1.188 25 C -0.271 4.271 26 N -0.040 5.040 27 C -0.092 4.092 28 N -0.042 5.042 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.201 0.799 33 H 0.262 0.738 34 H 0.160 0.840 35 H 0.177 0.823 36 H 0.151 0.849 37 H 0.093 0.907 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.157 0.843 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -20.294 -0.383 3.740 20.639 hybrid contribution 0.563 0.184 -0.122 0.604 sum -19.732 -0.200 3.619 20.062 Atomic orbital electron populations 1.23701 0.73492 1.06199 1.03135 1.86622 1.25725 1.30791 1.83347 1.19424 0.85913 0.81997 0.72138 1.90869 1.65725 1.36774 1.47064 1.20627 0.91623 0.90804 1.15593 1.21950 0.89066 1.00411 1.00472 1.21062 0.95484 0.84435 1.15982 1.16962 0.81431 0.86639 0.76621 1.90830 1.85224 1.15352 1.48085 1.43690 1.04661 1.14179 1.67835 1.17428 0.84788 0.91386 0.98202 1.21247 1.00412 0.92369 1.07752 1.21019 0.89988 1.00575 0.95520 1.20599 0.99838 0.92018 1.09339 1.19299 0.84806 0.93350 0.93409 1.83569 1.28339 1.23472 1.79368 1.20711 0.96866 0.78900 1.50758 0.89178 1.25167 1.01345 0.96257 0.95725 1.69699 1.28512 1.08814 1.48823 0.85329 0.78102 0.79126 0.78926 1.19209 1.19674 1.18800 1.20842 0.91801 1.01470 1.12964 1.46352 1.06108 1.04503 1.46997 1.23133 0.81807 0.96440 1.07827 1.73681 0.89747 1.26171 1.14572 0.91265 0.91358 0.84682 0.79940 0.73826 0.83995 0.82333 0.84865 0.90676 0.85366 0.85336 0.84348 0.87647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.57 113.37 1.20 1.51 16 2 O -0.35 -6.85 10.57 -56.36 -0.60 -7.45 16 3 C 0.56 13.16 7.97 70.30 0.56 13.72 16 4 O -0.52 -13.85 16.70 19.91 0.33 -13.52 16 5 C -0.03 -0.79 7.13 42.27 0.30 -0.49 16 6 C -0.09 -2.15 10.58 22.65 0.24 -1.91 16 7 C -0.05 -1.04 6.88 40.44 0.28 -0.76 16 8 C 0.60 16.01 7.59 86.59 0.66 16.67 16 9 O -0.52 -16.91 14.07 -4.14 -0.06 -16.97 16 10 N -0.65 -16.89 4.86 -306.72 -1.49 -18.39 16 11 C 0.18 5.82 6.39 38.16 0.24 6.06 16 12 C -0.20 -6.37 8.73 22.43 0.20 -6.17 16 13 C -0.05 -1.60 10.03 22.23 0.22 -1.38 16 14 C -0.20 -7.13 9.99 22.42 0.22 -6.90 16 15 C 0.14 6.09 6.64 22.56 0.15 6.24 16 16 O -0.24 -12.09 8.58 -22.76 -0.20 -12.29 16 17 C -0.40 -21.38 9.95 67.92 0.68 -20.70 16 18 H 0.09 4.92 5.44 -2.91 -0.02 4.90 16 19 C 0.01 0.76 5.49 84.83 0.47 1.23 16 20 N -0.92 -51.20 13.96 21.61 0.30 -50.89 16 21 Si 0.96 43.04 28.62 68.60 1.96 45.00 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.25 -9.71 9.07 22.52 0.20 -9.50 16 26 N -0.24 -4.67 3.75 -357.01 -1.34 -6.01 16 27 C 0.05 0.52 9.69 127.77 1.24 1.76 16 28 N -0.20 -4.34 11.97 -48.49 -0.58 -4.92 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.18 4.08 8.06 -2.91 -0.02 4.05 16 33 H 0.42 8.21 5.10 -92.71 -0.47 7.73 16 34 H 0.14 4.47 5.84 -2.91 -0.02 4.45 16 35 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 36 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 37 H 0.28 14.64 8.31 -92.71 -0.77 13.87 16 38 H 0.13 5.13 5.64 -2.91 -0.02 5.12 16 39 H 0.13 0.87 8.03 -2.39 -0.02 0.85 16 40 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.27 6.12 -2.39 -0.01 1.26 16 Total: -1.00 -71.33 362.31 5.84 -65.49 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.65 Total: 20.57 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 6.85 Total: -0.62 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -3.11 Total: -80.22 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.52 Total: -50.23 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.96 Total: 45.00 kcal Total: -71.33 5.84 -65.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411269902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.819 kcal (2) G-P(sol) polarization free energy of solvation -71.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds