Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34725 * 116.99996 * 2 1 4 4 O 1.21496 * 120.00133 * 0.02562 * 3 2 1 5 5 C 1.47594 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.41046 * 125.96615 * 180.27462 * 5 3 2 7 7 C 1.35768 * 107.78665 * 180.10664 * 6 5 3 8 8 N 1.39420 * 126.10347 * 179.90800 * 7 6 5 9 9 C 1.34771 * 119.99808 * 359.68675 * 8 7 6 10 10 O 1.21610 * 120.00287 * 0.02562 * 9 8 7 11 11 C 1.47499 * 119.99766 * 180.02562 * 9 8 7 12 12 C 1.39686 * 120.19845 * 359.97438 * 11 9 8 13 13 C 1.37821 * 119.91875 * 180.02562 * 12 11 9 14 14 C 1.38585 * 120.32421 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.40427 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07207 * 0.02562 * 15 14 13 17 17 O 1.35528 * 120.15817 * 180.02562 * 16 15 14 18 18 C 1.34809 * 116.99799 * 354.39661 * 17 16 15 19 19 H 1.07997 * 120.00340 * 5.06635 * 18 17 16 20 20 C 1.38703 * 119.99878 * 185.06399 * 18 17 16 21 21 N 1.31525 * 119.99584 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00256 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46923 * 90.00055 * 22 20 18 24 24 H 1.48500 * 109.47153 * 210.00079 * 22 20 18 25 25 H 1.48498 * 109.47115 * 330.00299 * 22 20 18 26 26 N 1.35988 * 107.79114 * 359.64607 * 7 6 5 27 27 C 1.46508 * 125.95912 * 180.20816 * 26 7 6 28 28 N 1.31923 * 125.96531 * 359.97438 * 5 3 2 29 29 H 1.09003 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46877 * 299.99808 * 1 2 3 31 31 H 1.08996 * 109.46662 * 59.99843 * 1 2 3 32 32 H 1.08001 * 126.10662 * 0.02562 * 6 5 3 33 33 H 0.97004 * 119.99554 * 179.68906 * 8 7 6 34 34 H 1.07994 * 120.04011 * 0.02562 * 12 11 9 35 35 H 1.08002 * 119.84170 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.79342 * 180.28214 * 14 13 12 37 37 H 1.07998 * 119.96126 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99271 * 179.97438 * 21 20 18 39 39 H 1.08999 * 109.47132 * 89.99419 * 27 26 7 40 40 H 1.08996 * 109.46901 * 209.99765 * 27 26 7 41 41 H 1.09003 * 109.46528 * 329.99446 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5376 1.2776 0.0006 6 6 4.3051 2.4610 0.0061 7 6 5.6155 2.1055 0.0023 8 7 6.7033 2.9775 0.0038 9 6 6.4990 4.3096 0.0032 10 8 5.3658 4.7511 0.0018 11 6 7.6499 5.2322 0.0042 12 6 8.9532 4.7297 0.0064 13 6 10.0243 5.5969 0.0079 14 6 9.8154 6.9669 0.0068 15 6 8.5332 7.4780 0.0046 16 6 7.4421 6.6196 0.0041 17 8 6.1824 7.1195 0.0015 18 6 6.0544 8.4565 0.1167 19 1 6.9329 9.0846 0.1233 20 6 4.7943 9.0256 0.2268 21 7 3.7244 8.2606 0.2193 22 14 4.6167 10.8783 0.3857 23 1 4.4988 11.4820 -0.9659 24 1 3.3997 11.1929 1.1763 25 1 5.8106 11.4328 1.0731 26 7 5.6774 0.7470 0.0026 27 6 6.9013 -0.0584 0.0035 28 7 4.3672 0.2519 0.0016 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.9194 3.4697 0.0111 33 1 7.6071 2.6253 0.0053 34 1 9.1213 3.6629 0.0069 35 1 11.0315 5.2070 0.0092 36 1 10.6610 7.6387 0.0033 37 1 8.3786 8.5469 0.0033 38 1 2.8432 8.6586 0.2966 39 1 7.2042 -0.2578 1.0313 40 1 6.7158 -1.0016 -0.5102 41 1 7.6943 0.4853 -0.5101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433570095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = -13.765047 kcal Electronic energy + Delta-G solvation = -29377.447368 eV Core-core repulsion = 25033.648981 eV Total energy + Delta-G solvation = -4343.798388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51159 -40.09138 -39.61873 -38.24428 -36.50669 -36.35257 -34.63415 -33.18324 -32.43995 -31.00660 -29.14931 -28.92069 -28.19040 -26.88354 -25.50751 -23.85875 -23.40502 -21.91060 -21.05066 -20.40271 -19.58848 -18.64405 -18.07597 -17.24600 -17.01260 -16.43405 -16.21403 -16.06223 -15.73569 -15.18855 -14.70053 -14.48795 -14.38615 -14.32729 -13.91195 -13.63645 -13.57013 -13.54074 -13.40279 -12.88694 -12.66776 -12.61011 -12.56779 -12.14796 -11.79827 -11.48058 -11.29146 -10.99256 -10.94008 -10.83911 -10.79630 -10.72692 -10.64877 -10.51232 -9.68934 -9.09826 -9.05538 -8.96130 -8.47441 -7.97240 -7.44564 -6.52768 -4.13080 1.18430 1.49996 1.98068 2.18134 2.25226 2.61383 3.08183 3.09515 3.14745 3.28772 3.32032 3.57168 3.86773 4.25426 4.47561 4.78741 4.91925 4.92462 5.01598 5.05137 5.06908 5.15497 5.17868 5.33757 5.37588 5.48587 5.54248 5.62867 5.83638 5.95162 5.98126 6.09432 6.32049 6.41065 6.52059 6.68914 6.79631 6.91056 7.00138 7.11703 7.17976 7.32361 7.54582 7.69579 7.84594 7.87773 8.66805 8.86047 9.53546 10.59937 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.003539 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.930432 B = 7909.416514 C =10839.249005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.348 6.348 3 C 0.551 3.449 4 O -0.480 6.480 5 C 0.054 3.946 6 C -0.223 4.223 7 C 0.321 3.679 8 N -0.657 5.657 9 C 0.558 3.442 10 O -0.461 6.461 11 C -0.230 4.230 12 C -0.037 4.037 13 C -0.230 4.230 14 C -0.047 4.047 15 C -0.232 4.232 16 C 0.190 3.810 17 O -0.118 6.118 18 C -0.405 4.405 19 H 0.096 0.904 20 C 0.046 3.954 21 N -0.823 5.823 22 Si 0.942 3.058 23 H -0.271 1.271 24 H -0.275 1.275 25 H -0.266 1.266 26 N -0.380 5.380 27 C 0.098 3.902 28 N -0.238 5.238 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.192 0.808 33 H 0.405 0.595 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.275 0.725 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.635 -14.405 -0.285 15.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.264 6.264 3 C 0.391 3.609 4 O -0.363 6.363 5 C -0.109 4.109 6 C -0.255 4.255 7 C 0.102 3.898 8 N -0.307 5.307 9 C 0.349 3.651 10 O -0.331 6.331 11 C -0.235 4.235 12 C -0.055 4.055 13 C -0.249 4.249 14 C -0.066 4.066 15 C -0.252 4.252 16 C 0.129 3.871 17 O -0.016 6.016 18 C -0.480 4.480 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.453 5.453 22 Si 0.766 3.234 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.190 1.190 26 N -0.172 5.172 27 C -0.043 4.043 28 N -0.068 5.068 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.209 0.791 33 H 0.241 0.759 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.190 -15.034 -0.285 15.908 hybrid contribution 0.501 1.465 0.070 1.550 sum 5.691 -13.569 -0.215 14.716 Atomic orbital electron populations 1.23311 0.75999 1.03651 1.02862 1.86624 1.23366 1.32106 1.84263 1.19640 0.86331 0.81681 0.73223 1.90934 1.65222 1.35901 1.44201 1.20709 0.90762 0.92821 1.06651 1.21746 0.88565 1.00556 1.14659 1.17982 0.89717 0.81131 1.00957 1.43141 1.06591 1.05791 1.75218 1.18366 0.90267 0.79558 0.76917 1.90923 1.22905 1.74863 1.44364 1.18429 0.91733 0.90434 1.22915 1.20702 0.91213 0.97950 0.95682 1.20449 0.97629 0.93368 1.13423 1.20937 0.96021 0.95023 0.94575 1.21170 0.91982 1.00610 1.11395 1.19177 0.86076 0.90789 0.91083 1.84144 1.20463 1.24498 1.72452 1.21528 0.94526 0.78999 1.52963 0.88642 1.25432 0.94189 1.00733 0.95964 1.70115 0.98403 1.35851 1.40969 0.85704 0.78696 0.80145 0.78854 1.19640 1.20001 1.18996 1.48731 1.05991 1.02566 1.59922 1.21906 0.82095 0.96610 1.03717 1.77777 0.85714 1.19744 1.23565 0.88014 0.91667 0.91662 0.79104 0.75896 0.87272 0.87072 0.86968 0.84834 0.91499 0.90294 0.88544 0.89688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.57 101.05 1.07 1.43 16 2 O -0.35 -5.05 10.57 -40.56 -0.43 -5.48 16 3 C 0.55 9.67 7.97 34.55 0.28 9.95 16 4 O -0.48 -9.64 16.69 -19.26 -0.32 -9.96 16 5 C 0.05 0.98 7.11 -82.95 -0.59 0.39 16 6 C -0.22 -4.44 9.41 -39.40 -0.37 -4.81 16 7 C 0.32 5.37 7.67 -152.67 -1.17 4.20 16 8 N -0.66 -10.21 5.36 -12.33 -0.07 -10.28 16 9 C 0.56 11.51 7.73 -12.49 -0.10 11.41 16 10 O -0.46 -11.89 12.28 -16.59 -0.20 -12.09 16 11 C -0.23 -4.59 5.89 -104.81 -0.62 -5.21 16 12 C -0.04 -0.56 9.54 -39.19 -0.37 -0.93 16 13 C -0.23 -3.36 10.03 -39.61 -0.40 -3.76 16 14 C -0.05 -0.76 10.03 -39.53 -0.40 -1.15 16 15 C -0.23 -4.64 9.16 -39.44 -0.36 -5.01 16 16 C 0.19 4.41 6.66 -38.59 -0.26 4.15 16 17 O -0.12 -3.33 7.84 -21.07 -0.17 -3.49 16 18 C -0.40 -10.99 9.49 30.90 0.29 -10.70 16 19 H 0.10 2.33 5.21 -52.49 -0.27 2.06 16 20 C 0.05 1.25 5.49 -17.51 -0.10 1.15 16 21 N -0.82 -24.30 13.67 55.48 0.76 -23.55 16 22 Si 0.94 19.99 29.55 -169.99 -5.02 14.96 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 N -0.38 -5.26 4.04 -67.09 -0.27 -5.53 16 27 C 0.10 0.76 11.28 59.85 0.68 1.43 16 28 N -0.24 -3.84 12.61 33.32 0.42 -3.42 16 29 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.19 4.51 5.80 -52.49 -0.30 4.20 16 33 H 0.40 4.46 5.99 -40.82 -0.24 4.22 16 34 H 0.11 1.17 6.40 -52.49 -0.34 0.83 16 35 H 0.11 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.13 2.64 5.64 -52.49 -0.30 2.34 16 38 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.45 7.50 -51.93 -0.39 0.06 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -36.41 363.59 -6.17 -42.58 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -3.94 Total: 8.22 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.41 Total: 2.56 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.84 Total: -42.78 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.12 Total: -31.03 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -36.41 -6.17 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433570095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.815 kcal (2) G-P(sol) polarization free energy of solvation -36.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds