Wall clock time and date at job start Wed Apr 1 2020 03:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34725 * 116.99996 * 2 1 4 4 O 1.21496 * 120.00133 * 0.02562 * 3 2 1 5 5 C 1.47594 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.41046 * 125.96615 * 180.27462 * 5 3 2 7 7 C 1.35768 * 107.78665 * 180.10664 * 6 5 3 8 8 N 1.39420 * 126.10347 * 179.90800 * 7 6 5 9 9 C 1.34771 * 119.99808 * 359.68675 * 8 7 6 10 10 O 1.21610 * 120.00287 * 0.02562 * 9 8 7 11 11 C 1.47499 * 119.99766 * 180.02562 * 9 8 7 12 12 C 1.39686 * 120.19845 * 359.97438 * 11 9 8 13 13 C 1.37821 * 119.91875 * 180.02562 * 12 11 9 14 14 C 1.38585 * 120.32421 * 359.97438 * 13 12 11 15 15 C 1.38026 * 120.40427 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.07207 * 0.02562 * 15 14 13 17 17 O 1.35528 * 120.15817 * 180.02562 * 16 15 14 18 18 C 1.34809 * 116.99799 * 354.39661 * 17 16 15 19 19 H 1.07997 * 120.00340 * 5.06635 * 18 17 16 20 20 C 1.38703 * 119.99878 * 185.06399 * 18 17 16 21 21 N 1.31525 * 119.99584 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00256 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46923 * 90.00055 * 22 20 18 24 24 H 1.48500 * 109.47153 * 210.00079 * 22 20 18 25 25 H 1.48498 * 109.47115 * 330.00299 * 22 20 18 26 26 N 1.35988 * 107.79114 * 359.64607 * 7 6 5 27 27 C 1.46508 * 125.95912 * 180.20816 * 26 7 6 28 28 N 1.31923 * 125.96531 * 359.97438 * 5 3 2 29 29 H 1.09003 * 109.46995 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46877 * 299.99808 * 1 2 3 31 31 H 1.08996 * 109.46662 * 59.99843 * 1 2 3 32 32 H 1.08001 * 126.10662 * 0.02562 * 6 5 3 33 33 H 0.97004 * 119.99554 * 179.68906 * 8 7 6 34 34 H 1.07994 * 120.04011 * 0.02562 * 12 11 9 35 35 H 1.08002 * 119.84170 * 180.02562 * 13 12 11 36 36 H 1.07999 * 119.79342 * 180.28214 * 14 13 12 37 37 H 1.07998 * 119.96126 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99271 * 179.97438 * 21 20 18 39 39 H 1.08999 * 109.47132 * 89.99419 * 27 26 7 40 40 H 1.08996 * 109.46901 * 209.99765 * 27 26 7 41 41 H 1.09003 * 109.46528 * 329.99446 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2194 0.0005 5 6 3.5376 1.2776 0.0006 6 6 4.3051 2.4610 0.0061 7 6 5.6155 2.1055 0.0023 8 7 6.7033 2.9775 0.0038 9 6 6.4990 4.3096 0.0032 10 8 5.3658 4.7511 0.0018 11 6 7.6499 5.2322 0.0042 12 6 8.9532 4.7297 0.0064 13 6 10.0243 5.5969 0.0079 14 6 9.8154 6.9669 0.0068 15 6 8.5332 7.4780 0.0046 16 6 7.4421 6.6196 0.0041 17 8 6.1824 7.1195 0.0015 18 6 6.0544 8.4565 0.1167 19 1 6.9329 9.0846 0.1233 20 6 4.7943 9.0256 0.2268 21 7 3.7244 8.2606 0.2193 22 14 4.6167 10.8783 0.3857 23 1 4.4988 11.4820 -0.9659 24 1 3.3997 11.1929 1.1763 25 1 5.8106 11.4328 1.0731 26 7 5.6774 0.7470 0.0026 27 6 6.9013 -0.0584 0.0035 28 7 4.3672 0.2519 0.0016 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 3.9194 3.4697 0.0111 33 1 7.6071 2.6253 0.0053 34 1 9.1213 3.6629 0.0069 35 1 11.0315 5.2070 0.0092 36 1 10.6610 7.6387 0.0033 37 1 8.3786 8.5469 0.0033 38 1 2.8432 8.6586 0.2966 39 1 7.2042 -0.2578 1.0313 40 1 6.7158 -1.0016 -0.5102 41 1 7.6943 0.4853 -0.5101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433570095.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:12 Heat of formation + Delta-G solvation = -40.127235 kcal Electronic energy + Delta-G solvation = -29378.590519 eV Core-core repulsion = 25033.648981 eV Total energy + Delta-G solvation = -4344.941538 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.86216 -41.50005 -41.09856 -39.87732 -38.07982 -37.65491 -36.15812 -34.37921 -34.28681 -32.46714 -30.62271 -30.27798 -29.30476 -27.83078 -27.39175 -25.32883 -24.64879 -23.42001 -22.46060 -21.73398 -21.06836 -20.04628 -19.75107 -18.77575 -18.37241 -17.75357 -17.68898 -17.21136 -16.94268 -16.72406 -16.28968 -16.01058 -16.00933 -15.71997 -15.35144 -15.20515 -14.87258 -14.76323 -14.50089 -14.38532 -14.27542 -13.61380 -13.55357 -13.44217 -13.09413 -13.03451 -12.72254 -12.55128 -12.36047 -12.24886 -12.23652 -12.13081 -12.02689 -11.91447 -11.42761 -10.83808 -10.77314 -10.25108 -9.92077 -9.40167 -9.04609 -8.44841 -6.16214 -0.18169 0.03395 0.72043 0.77854 0.83350 1.32879 1.36526 1.44237 1.51971 1.85174 2.06002 2.11798 2.15498 2.86516 3.08315 3.19902 3.41842 3.61717 3.91407 4.04159 4.20703 4.24931 4.27077 4.30253 4.31275 4.40800 4.50190 4.53982 4.63602 4.64503 4.69156 4.81260 4.93063 5.06215 5.07227 5.11361 5.28434 5.45530 5.57073 5.65669 5.70454 5.92963 6.01946 6.15529 6.40236 6.55083 6.94157 7.15135 7.77075 8.74621 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009473 B = 0.003539 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2954.930432 B = 7909.416514 C =10839.249005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.343 6.343 3 C 0.553 3.447 4 O -0.520 6.520 5 C 0.038 3.962 6 C -0.263 4.263 7 C 0.325 3.675 8 N -0.627 5.627 9 C 0.554 3.446 10 O -0.523 6.523 11 C -0.241 4.241 12 C -0.025 4.025 13 C -0.197 4.197 14 C -0.035 4.035 15 C -0.256 4.256 16 C 0.153 3.847 17 O -0.187 6.187 18 C -0.425 4.425 19 H 0.110 0.890 20 C -0.021 4.021 21 N -0.902 5.902 22 Si 1.020 2.980 23 H -0.262 1.262 24 H -0.276 1.276 25 H -0.245 1.245 26 N -0.355 5.355 27 C 0.077 3.923 28 N -0.224 5.224 29 H 0.145 0.855 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.431 0.569 34 H 0.168 0.832 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.270 0.730 39 H 0.105 0.895 40 H 0.116 0.884 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.313 -17.393 -0.248 21.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.258 6.258 3 C 0.395 3.605 4 O -0.406 6.406 5 C -0.125 4.125 6 C -0.296 4.296 7 C 0.104 3.896 8 N -0.280 5.280 9 C 0.346 3.654 10 O -0.396 6.396 11 C -0.246 4.246 12 C -0.044 4.044 13 C -0.215 4.215 14 C -0.053 4.053 15 C -0.275 4.275 16 C 0.097 3.903 17 O -0.089 6.089 18 C -0.501 4.501 19 H 0.128 0.872 20 C -0.221 4.221 21 N -0.538 5.538 22 Si 0.838 3.162 23 H -0.187 1.187 24 H -0.201 1.201 25 H -0.168 1.168 26 N -0.147 5.147 27 C -0.061 4.061 28 N -0.056 5.056 29 H 0.163 0.837 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.160 0.840 33 H 0.272 0.728 34 H 0.185 0.815 35 H 0.186 0.814 36 H 0.172 0.828 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.123 0.877 40 H 0.134 0.866 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 11.012 -18.131 -0.252 21.215 hybrid contribution -0.753 1.941 0.041 2.082 sum 10.259 -16.191 -0.210 19.168 Atomic orbital electron populations 1.23735 0.73561 1.06448 1.02931 1.86610 1.25708 1.30095 1.83418 1.19714 0.86393 0.82011 0.72341 1.90911 1.66031 1.37360 1.46323 1.20641 0.91291 0.92478 1.08071 1.21411 0.91066 0.99424 1.17674 1.17675 0.88827 0.82614 1.00461 1.42606 1.07577 1.04011 1.73772 1.18702 0.89692 0.81117 0.75905 1.90963 1.25414 1.76368 1.46894 1.18863 0.93764 0.89207 1.22736 1.21338 0.88669 1.01276 0.93087 1.21206 0.99959 0.92320 1.08049 1.21496 0.95188 0.96970 0.91610 1.21303 0.93100 1.00076 1.13049 1.20051 0.86002 0.92969 0.91246 1.84164 1.23008 1.24650 1.77101 1.22026 0.95251 0.79728 1.53106 0.87243 1.26750 0.93558 1.06224 0.95558 1.70326 0.98875 1.38280 1.46282 0.84588 0.79050 0.73344 0.79179 1.18716 1.20092 1.16805 1.49157 1.06848 1.01559 1.57140 1.22639 0.79995 0.97127 1.06315 1.77701 0.86587 1.18872 1.22421 0.83716 0.91704 0.91666 0.83970 0.72762 0.81493 0.81390 0.82780 0.85853 0.92085 0.87689 0.86550 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.57 113.37 1.20 1.73 16 2 O -0.34 -10.10 10.57 -56.35 -0.60 -10.69 16 3 C 0.55 20.74 7.97 70.29 0.56 21.30 16 4 O -0.52 -22.99 16.69 19.85 0.33 -22.66 16 5 C 0.04 1.44 7.11 42.29 0.30 1.74 16 6 C -0.26 -11.30 9.41 22.39 0.21 -11.09 16 7 C 0.32 10.78 7.67 131.03 1.00 11.78 16 8 N -0.63 -18.49 5.36 -311.19 -1.67 -20.16 16 9 C 0.55 23.59 7.73 86.69 0.67 24.26 16 10 O -0.52 -29.75 12.28 16.83 0.21 -29.54 16 11 C -0.24 -9.44 5.89 -19.99 -0.12 -9.56 16 12 C -0.03 -0.63 9.54 22.52 0.21 -0.42 16 13 C -0.20 -4.33 10.03 22.25 0.22 -4.10 16 14 C -0.03 -0.94 10.03 22.30 0.22 -0.72 16 15 C -0.26 -10.12 9.16 22.36 0.20 -9.92 16 16 C 0.15 7.40 6.66 22.91 0.15 7.56 16 17 O -0.19 -11.51 7.84 0.80 0.01 -11.50 16 18 C -0.43 -25.12 9.49 67.93 0.64 -24.48 16 19 H 0.11 5.73 5.21 -2.91 -0.02 5.72 16 20 C -0.02 -1.25 5.49 84.85 0.47 -0.78 16 21 N -0.90 -59.39 13.67 21.62 0.30 -59.09 16 22 Si 1.02 44.08 29.55 68.60 2.03 46.11 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 24 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 25 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 26 N -0.35 -8.93 4.04 -366.17 -1.48 -10.41 16 27 C 0.08 0.78 11.28 127.77 1.44 2.23 16 28 N -0.22 -7.03 12.61 -48.50 -0.61 -7.64 16 29 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.14 7.69 5.80 -2.91 -0.02 7.67 16 33 H 0.43 7.37 5.99 -92.71 -0.56 6.81 16 34 H 0.17 2.17 6.40 -2.91 -0.02 2.15 16 35 H 0.17 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.12 5.01 5.64 -2.91 -0.02 5.00 16 38 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.12 0.47 7.50 -2.39 -0.02 0.45 16 Total: -1.00 -98.11 363.59 6.47 -91.64 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: 0.57 Total: 24.45 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 7.40 Total: 9.51 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -3.46 Total: -97.31 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -0.05 Total: -74.40 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -98.11 6.47 -91.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433570095.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.512 kcal (2) G-P(sol) polarization free energy of solvation -98.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds