Wall clock time and date at job start Wed Apr 1 2020 02:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 110.63873 * 2 1 4 4 C 1.54327 * 110.72257 * 236.85808 * 2 1 3 5 5 N 1.47016 * 107.26974 * 263.82770 * 4 2 1 6 6 C 1.34779 * 125.64424 * 181.02053 * 5 4 2 7 7 O 1.21688 * 119.99874 * 180.02562 * 6 5 4 8 8 C 1.46681 * 120.00295 * 0.02938 * 6 5 4 9 9 S 1.76210 * 126.12793 * 359.68397 * 8 6 5 10 10 C 1.70956 * 90.31447 * 180.26432 * 9 8 6 11 11 N 1.29430 * 110.38698 * 0.02562 * 10 9 8 12 12 C 1.30936 * 117.36901 * 0.02562 * 11 10 9 13 13 C 1.50702 * 122.90638 * 179.97438 * 12 11 10 14 14 F 1.39902 * 109.47213 * 120.03642 * 13 12 11 15 15 F 1.39895 * 109.46933 * 240.03510 * 13 12 11 16 16 C 1.47424 * 108.70528 * 1.28927 * 5 4 2 17 17 C 1.55132 * 104.71952 * 335.54819 * 16 5 4 18 18 H 1.08998 * 111.19548 * 279.19306 * 17 16 5 19 19 C 1.53002 * 110.93516 * 155.29015 * 17 16 5 20 20 N 1.46506 * 109.47188 * 72.96086 * 19 17 16 21 21 C 1.36938 * 120.00007 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00000 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99677 * 179.97438 * 21 20 19 24 24 N 1.31614 * 120.00080 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99729 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47198 * 60.00020 * 25 23 21 27 27 H 1.48505 * 109.46892 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47242 * 299.99792 * 25 23 21 29 29 H 1.09008 * 109.46938 * 181.68435 * 1 2 3 30 30 H 1.09002 * 109.47623 * 301.68459 * 1 2 3 31 31 H 1.08997 * 109.47516 * 61.69344 * 1 2 3 32 32 H 1.08996 * 109.88229 * 144.40942 * 4 2 1 33 33 H 1.09002 * 110.00943 * 23.32189 * 4 2 1 34 34 H 1.07997 * 124.80841 * 179.97438 * 10 9 8 35 35 H 1.08999 * 109.46879 * 0.03364 * 13 12 11 36 36 H 1.08998 * 110.36760 * 94.48195 * 16 5 4 37 37 H 1.09002 * 110.36569 * 216.80654 * 16 5 4 38 38 H 1.08998 * 109.47014 * 192.95765 * 19 17 16 39 39 H 1.09004 * 109.47282 * 312.96030 * 19 17 16 40 40 H 0.96998 * 119.99653 * 359.97438 * 20 19 17 41 41 H 0.97005 * 119.99632 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 2.3717 -2.1518 -0.7426 6 6 2.8851 -3.1451 -1.4951 7 8 3.0893 -4.2387 -1.0019 8 6 3.1977 -2.9081 -2.9085 9 16 2.9611 -1.3983 -3.7858 10 6 3.5713 -2.1197 -5.2105 11 7 3.8971 -3.3524 -4.9879 12 6 3.7141 -3.8140 -3.7764 13 6 4.0492 -5.2288 -3.3799 14 9 5.0033 -5.2128 -2.3569 15 9 2.8923 -5.8730 -2.9287 16 6 2.0075 -2.2536 0.6823 17 6 2.0790 -0.7974 1.2124 18 1 3.1061 -0.5097 1.4366 19 6 1.1820 -0.6174 2.4388 20 7 1.7919 -1.2841 3.5920 21 6 1.1646 -1.2573 4.8090 22 1 0.2206 -0.7444 4.9188 23 6 1.7423 -1.8894 5.9015 24 7 2.8926 -2.5148 5.7676 25 14 0.8871 -1.8522 7.5618 26 1 -0.4495 -2.4886 7.4445 27 1 1.7036 -2.5941 8.5559 28 1 0.7276 -0.4439 8.0052 29 1 -0.3633 -1.0273 0.0302 30 1 -0.3634 0.5398 0.8745 31 1 -0.3634 0.4873 -0.9047 32 1 2.9868 -0.3180 -1.5781 33 1 1.3283 -0.8223 -2.0011 34 1 3.6702 -1.6181 -6.1618 35 1 4.4495 -5.7624 -4.2419 36 1 0.9974 -2.6493 0.7884 37 1 2.7208 -2.8851 1.2120 38 1 1.0673 0.4453 2.6522 39 1 0.2038 -1.0559 2.2410 40 1 2.6396 -1.7450 3.4933 41 1 3.2960 -2.9568 6.5311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484371151.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:33 Heat of formation + Delta-G solvation = -65.638911 kcal Electronic energy + Delta-G solvation = -28351.096703 eV Core-core repulsion = 24029.405331 eV Total energy + Delta-G solvation = -4321.691372 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.106 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.92176 -46.91745 -40.65989 -39.94978 -37.94782 -34.76509 -33.01427 -31.70924 -31.20598 -29.35363 -28.11992 -26.75351 -25.47702 -25.01458 -23.40808 -21.94678 -21.34130 -19.76777 -19.32588 -18.88892 -17.49302 -17.27250 -16.89443 -16.75182 -16.53919 -16.11871 -15.77367 -15.26278 -14.78664 -14.68534 -14.40461 -14.04577 -13.76592 -13.60831 -13.30203 -13.23754 -13.04826 -13.01010 -12.65184 -12.57192 -12.47854 -12.33115 -11.92661 -11.69370 -11.22457 -11.08936 -10.84939 -10.71304 -10.49925 -10.45459 -10.29787 -10.12867 -10.01036 -9.96342 -9.68172 -9.66428 -8.87343 -8.70943 -6.93292 -5.75375 -3.05213 -0.30164 0.61924 1.03178 1.86433 2.72649 2.89504 3.10982 3.44950 3.49214 3.50744 3.94120 4.07153 4.32170 4.36321 4.38282 4.56795 4.71489 4.74418 4.92939 4.97972 5.11867 5.19407 5.22792 5.31337 5.42495 5.58795 5.69418 5.73901 5.88205 5.96602 6.06965 6.11777 6.20852 6.30521 6.38620 6.64393 6.77664 6.94544 7.31398 7.69322 7.93259 8.42590 9.53802 10.10305 10.44309 11.47105 Molecular weight = 345.11amu Principal moments of inertia in cm(-1) A = 0.015998 B = 0.002896 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.780245 B = 9664.826518 C =10993.089896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.089 3.911 5 N -0.608 5.608 6 C 0.594 3.406 7 O -0.495 6.495 8 C -0.237 4.237 9 S 0.221 5.779 10 C 0.008 3.992 11 N -0.456 5.456 12 C 0.048 3.952 13 C 0.356 3.644 14 F -0.181 7.181 15 F -0.181 7.181 16 C 0.120 3.880 17 C -0.102 4.102 18 H 0.088 0.912 19 C 0.166 3.834 20 N -0.733 5.733 21 C -0.244 4.244 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.907 3.093 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.210 0.790 35 H 0.127 0.873 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.384 0.616 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 5.308 -26.648 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 H 0.112 0.888 4 C -0.035 4.035 5 N -0.343 5.343 6 C 0.379 3.621 7 O -0.371 6.371 8 C -0.363 4.363 9 S 0.478 5.522 10 C -0.287 4.287 11 N -0.169 5.169 12 C -0.092 4.092 13 C 0.299 3.701 14 F -0.162 7.162 15 F -0.162 7.162 16 C -0.001 4.001 17 C -0.121 4.121 18 H 0.106 0.894 19 C 0.038 3.962 20 N -0.378 5.378 21 C -0.375 4.375 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.738 3.262 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.213 1.213 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.227 0.773 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.042 0.958 39 H 0.044 0.956 40 H 0.218 0.782 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.173 5.400 -26.515 27.060 hybrid contribution 0.094 -0.827 0.966 1.275 sum -0.079 4.573 -25.549 25.955 Atomic orbital electron populations 1.21869 0.93732 1.02619 1.02122 1.22151 0.96841 0.99109 0.92875 0.88836 1.22346 1.00191 0.82878 0.98104 1.48348 1.62357 1.10853 1.12692 1.16255 0.78713 0.84234 0.82904 1.90972 1.52018 1.22460 1.71615 1.25843 1.11624 0.98273 1.00559 1.84330 1.55242 1.11497 1.01113 1.28893 1.01105 0.93511 1.05168 1.65880 1.18516 1.13185 1.19270 1.21078 1.01280 0.98302 0.88579 1.19435 0.76325 0.86735 0.87594 1.93076 1.63470 1.96841 1.62768 1.93065 1.50541 1.81724 1.90919 1.22470 1.01698 0.98196 0.77778 1.22697 1.01436 0.93152 0.94837 0.89372 1.20629 0.94098 0.96060 0.85390 1.42377 1.25705 1.64444 1.05260 1.19140 1.03104 1.28633 0.86586 0.91223 1.24750 0.97273 1.00622 0.98142 1.69649 1.18102 1.39705 1.30444 0.86274 0.78564 0.77392 0.83963 1.21243 1.21683 1.21294 0.92208 0.91080 0.92756 0.91048 0.90886 0.77339 0.85601 0.90546 0.89317 0.95761 0.95636 0.78225 0.93381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 7.91 37.16 0.29 -1.17 16 2 C -0.09 -0.95 3.47 -88.79 -0.31 -1.26 16 3 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 4 C 0.09 0.90 4.77 -3.07 -0.01 0.88 16 5 N -0.61 -8.55 3.32 -171.92 -0.57 -9.13 16 6 C 0.59 9.34 7.77 -12.85 -0.10 9.24 16 7 O -0.50 -9.67 13.30 5.20 0.07 -9.60 16 8 C -0.24 -2.97 6.36 -37.10 -0.24 -3.21 16 9 S 0.22 1.63 18.69 -107.50 -2.01 -0.38 16 10 C 0.01 0.06 12.22 51.75 0.63 0.69 16 11 N -0.46 -4.68 10.50 -11.53 -0.12 -4.80 16 12 C 0.05 0.59 6.25 -83.89 -0.52 0.07 16 13 C 0.36 4.58 5.07 36.01 0.18 4.76 16 14 F -0.18 -2.80 15.78 2.25 0.04 -2.77 16 15 F -0.18 -2.77 15.76 2.25 0.04 -2.73 16 16 C 0.12 1.93 6.01 -2.41 -0.01 1.92 16 17 C -0.10 -1.51 2.93 -88.35 -0.26 -1.77 16 18 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 19 C 0.17 3.08 4.54 -4.04 -0.02 3.06 16 20 N -0.73 -18.10 5.55 -59.90 -0.33 -18.44 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.89 16 22 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.35 13.06 55.49 0.72 -27.62 16 25 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H 0.06 0.67 7.33 -51.92 -0.38 0.29 16 30 H 0.07 0.75 7.12 -51.93 -0.37 0.38 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.62 6.88 -51.93 -0.36 0.26 16 33 H 0.07 0.61 6.71 -51.93 -0.35 0.26 16 34 H 0.21 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.27 7.47 -51.93 -0.39 0.88 16 37 H 0.09 1.69 8.03 -51.93 -0.42 1.27 16 38 H 0.02 0.45 8.05 -51.93 -0.42 0.03 16 39 H 0.03 0.48 6.94 -51.93 -0.36 0.12 16 40 H 0.38 10.11 7.67 -40.82 -0.31 9.80 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -35.11 352.56 -7.50 -42.62 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -5.01 Total: 4.24 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -0.61 Total: 5.89 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.30 Total: -59.99 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 9 Polarization: -5.57 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.01 Total: -0.38 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.11 -7.50 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484371151.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.021 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds