Wall clock time and date at job start Wed Apr 1 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47697 * 330.37347 * 3 2 1 5 5 C 1.36966 * 119.99971 * 270.00475 * 4 3 2 6 6 H 1.08000 * 119.99987 * 16.95752 * 5 4 3 7 7 C 1.38978 * 119.99838 * 196.95841 * 5 4 3 8 8 N 1.31408 * 120.00115 * 17.84484 * 7 5 4 9 9 Si 1.86796 * 120.00115 * 197.83993 * 7 5 4 10 10 H 1.48505 * 109.47111 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47166 * 120.00168 * 9 7 5 12 12 H 1.48499 * 109.47315 * 240.00528 * 9 7 5 13 13 C 1.34778 * 120.00012 * 89.99758 * 4 3 2 14 14 O 1.21645 * 120.00479 * 242.76216 * 13 4 3 15 15 C 1.47202 * 119.99437 * 62.76228 * 13 4 3 16 16 C 1.38039 * 126.81875 * 22.58892 * 15 13 4 17 17 N 1.34170 * 107.87365 * 179.97438 * 16 15 13 18 18 C 1.46503 * 125.15630 * 179.97438 * 17 16 15 19 19 N 1.39768 * 109.68913 * 0.02562 * 17 16 15 20 20 C 1.31372 * 109.09499 * 359.97438 * 19 17 16 21 21 C 1.48260 * 126.51231 * 179.97438 * 20 19 17 22 22 C 1.39379 * 120.12518 * 213.80359 * 21 20 19 23 23 C 1.38189 * 119.87304 * 179.97438 * 22 21 20 24 24 F 1.35095 * 119.93840 * 179.97438 * 23 22 21 25 25 C 1.38574 * 120.12455 * 0.02562 * 23 22 21 26 26 C 1.38245 * 120.25898 * 0.02562 * 25 23 22 27 27 C 1.38269 * 120.12279 * 359.70066 * 26 25 23 28 28 F 1.35098 * 120.06552 * 180.29335 * 27 26 25 29 29 H 4.40650 * 5.51289 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.46746 * 210.37282 * 3 2 1 31 31 H 1.09007 * 109.47082 * 90.37590 * 3 2 1 32 32 H 0.97004 * 120.00095 * 184.96570 * 8 7 5 33 33 H 1.07997 * 126.06533 * 359.71101 * 16 15 13 34 34 H 1.08997 * 109.46758 * 90.00001 * 18 17 16 35 35 H 1.08995 * 109.47211 * 210.00213 * 18 17 16 36 36 H 1.09007 * 109.46961 * 330.00657 * 18 17 16 37 37 H 1.07999 * 120.06499 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.86937 * 180.02562 * 25 23 22 39 39 H 1.07994 * 119.93933 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.1997 0.6828 5 6 3.3632 -1.1745 2.0330 6 1 2.9373 -0.3878 2.6381 7 6 4.1429 -2.1613 2.6245 8 7 4.9390 -2.9007 1.8854 9 14 4.0594 -2.4364 4.4702 10 1 3.0937 -1.4809 5.0699 11 1 3.6144 -3.8264 4.7438 12 1 5.4033 -2.2209 5.0641 13 6 3.3602 -2.3289 -0.0178 14 8 2.7182 -3.3333 0.2246 15 6 4.3830 -2.3466 -1.0763 16 6 5.4624 -1.4948 -1.1979 17 7 6.1455 -1.8502 -2.2966 18 6 7.3622 -1.1943 -2.7824 19 7 5.5199 -2.9401 -2.9082 20 6 4.4576 -3.2728 -2.2106 21 6 3.5130 -4.3748 -2.5133 22 6 2.1595 -4.2391 -2.2098 23 6 1.2836 -5.2694 -2.4946 24 9 -0.0285 -5.1395 -2.2005 25 6 1.7488 -6.4358 -3.0804 26 6 3.0905 -6.5765 -3.3828 27 6 3.9751 -5.5501 -3.1074 28 9 5.2850 -5.6865 -3.4088 29 1 -1.0498 -0.0002 0.0003 30 1 3.0089 0.8875 0.5197 31 1 3.0093 0.0076 -1.0277 32 1 5.4286 -3.6360 2.2860 33 1 5.7104 -0.6833 -0.5299 34 1 8.2350 -1.6744 -2.3398 35 1 7.4121 -1.2792 -3.8679 36 1 7.3447 -0.1415 -2.5006 37 1 1.7958 -3.3307 -1.7529 38 1 1.0606 -7.2382 -3.3017 39 1 3.4474 -7.4876 -3.8396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538104004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:29 Heat of formation + Delta-G solvation = 66.617963 kcal Electronic energy + Delta-G solvation = -30327.499479 eV Core-core repulsion = 25876.099245 eV Total energy + Delta-G solvation = -4451.400234 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.61653 -48.57430 -40.55510 -38.38905 -38.08773 -34.81989 -33.33307 -32.63954 -31.19012 -30.85629 -29.98556 -29.37691 -26.49511 -26.44743 -24.61252 -23.36919 -22.46065 -21.46369 -19.88795 -19.33324 -17.83055 -17.39093 -17.20837 -16.84266 -16.66455 -15.91936 -15.56981 -15.41869 -15.09725 -14.98698 -14.61867 -14.31246 -14.16039 -14.00859 -13.88800 -13.62873 -13.21584 -12.96695 -12.74669 -12.56880 -12.50814 -12.28572 -12.13666 -11.73506 -11.48243 -11.37689 -10.96796 -10.91794 -10.55624 -10.30815 -10.25951 -9.85303 -9.61728 -9.54609 -9.08877 -8.72448 -8.39896 -8.22661 -7.72278 -7.50484 -6.16686 -3.60374 0.96727 1.27045 2.29240 2.71213 2.75857 3.29171 3.32687 3.40276 3.43419 3.47513 3.70794 4.20975 4.33683 4.40130 4.46325 4.61996 4.82144 4.92252 5.00677 5.07601 5.16892 5.27239 5.33045 5.36764 5.39120 5.49953 5.77891 5.86059 5.97365 6.03998 6.20644 6.21633 6.30302 6.31986 6.41004 6.46530 6.59557 6.92552 7.03220 7.36529 7.56473 8.00320 8.10510 8.26469 8.98343 9.29673 9.50560 9.97769 10.95091 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.005183 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.395263 B = 5400.679409 C = 6299.828426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.176 4.176 3 C 0.233 3.767 4 N -0.548 5.548 5 C -0.293 4.293 6 H 0.084 0.916 7 C 0.030 3.970 8 N -0.876 5.876 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.287 1.287 13 C 0.657 3.343 14 O -0.514 6.514 15 C -0.223 4.223 16 C 0.113 3.887 17 N -0.376 5.376 18 C 0.104 3.896 19 N -0.281 5.281 20 C 0.128 3.872 21 C -0.003 4.003 22 C -0.066 4.066 23 C 0.085 3.915 24 F -0.136 7.136 25 C -0.123 4.123 26 C -0.137 4.137 27 C 0.111 3.889 28 F -0.126 7.126 29 H 0.208 0.792 30 H 0.088 0.912 31 H 0.073 0.927 32 H 0.267 0.733 33 H 0.184 0.816 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.584 1.527 -11.619 11.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.178 4.178 3 C 0.108 3.892 4 N -0.277 5.277 5 C -0.420 4.420 6 H 0.102 0.898 7 C -0.173 4.173 8 N -0.517 5.517 9 Si 0.739 3.261 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.214 1.214 13 C 0.448 3.552 14 O -0.388 6.388 15 C -0.238 4.238 16 C -0.033 4.033 17 N -0.158 5.158 18 C -0.038 4.038 19 N -0.102 5.102 20 C -0.040 4.040 21 C -0.006 4.006 22 C -0.086 4.086 23 C 0.066 3.934 24 F -0.114 7.114 25 C -0.143 4.143 26 C -0.156 4.156 27 C 0.090 3.910 28 F -0.104 7.104 29 H 0.225 0.775 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.201 0.799 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.160 0.840 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.340 0.699 -12.487 12.578 hybrid contribution -0.345 -0.056 1.992 2.022 sum 0.994 0.642 -10.495 10.562 Atomic orbital electron populations 1.24715 0.95765 1.01851 1.02860 1.24573 0.95796 0.98975 0.98494 1.17958 0.83008 0.90892 0.97341 1.42458 1.70658 1.07449 1.07106 1.19193 1.27658 1.13688 0.81435 0.89784 1.24963 0.94609 0.98416 0.99305 1.69481 1.25886 1.19802 1.36506 0.86123 0.77410 0.78417 0.84111 1.19820 1.21041 1.21381 1.16293 0.79042 0.82719 0.77104 1.90536 1.47080 1.36516 1.64699 1.21876 1.02527 0.99594 0.99807 1.22857 0.92080 0.99442 0.88877 1.47994 1.22346 1.25155 1.20266 1.21821 0.83609 0.96933 1.01414 1.77196 1.09028 1.02876 1.21133 1.21384 0.93307 0.95192 0.94095 1.17432 0.91770 0.91291 1.00097 1.21114 0.91013 1.00024 0.96453 1.17419 0.78520 0.95531 1.01935 1.91501 1.32206 1.96244 1.91465 1.20942 0.95829 0.97034 1.00446 1.20757 0.92359 0.98882 1.03607 1.17646 0.78759 0.94490 1.00106 1.91522 1.32331 1.95916 1.90663 0.77520 0.89452 0.90888 0.92202 0.79939 0.90959 0.89590 0.89448 0.83215 0.83962 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.10 19.25 29.55 0.57 -3.53 16 2 C -0.18 -3.43 13.67 -37.12 -0.51 -3.93 16 3 C 0.23 4.44 6.03 -6.83 -0.04 4.40 16 4 N -0.55 -13.07 2.38 -119.23 -0.28 -13.36 16 5 C -0.29 -7.61 9.62 -14.98 -0.14 -7.76 16 6 H 0.08 2.11 7.89 -52.49 -0.41 1.70 16 7 C 0.03 0.79 5.07 -17.46 -0.09 0.71 16 8 N -0.88 -24.42 11.11 55.50 0.62 -23.80 16 9 Si 0.91 21.47 29.59 -169.99 -5.03 16.44 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.66 16.38 3.25 -12.62 -0.04 16.34 16 14 O -0.51 -14.44 14.23 5.24 0.07 -14.36 16 15 C -0.22 -4.92 5.46 -102.94 -0.56 -5.48 16 16 C 0.11 2.11 11.23 -16.60 -0.19 1.92 16 17 N -0.38 -6.30 3.95 -67.62 -0.27 -6.57 16 18 C 0.10 1.12 11.39 59.85 0.68 1.80 16 19 N -0.28 -5.49 11.82 34.58 0.41 -5.08 16 20 C 0.13 2.70 6.79 -80.56 -0.55 2.15 16 21 C 0.00 -0.06 5.69 -104.86 -0.60 -0.65 16 22 C -0.07 -1.27 7.86 -39.18 -0.31 -1.58 16 23 C 0.09 1.44 7.29 -39.48 -0.29 1.15 16 24 F -0.14 -2.31 17.26 2.25 0.04 -2.28 16 25 C -0.12 -1.69 10.02 -39.45 -0.40 -2.08 16 26 C -0.14 -1.91 10.01 -39.57 -0.40 -2.30 16 27 C 0.11 1.94 7.28 -39.08 -0.28 1.65 16 28 F -0.13 -2.29 16.29 2.25 0.04 -2.25 16 29 H 0.21 2.80 7.80 -54.10 -0.42 2.38 16 30 H 0.09 1.48 8.04 -51.92 -0.42 1.06 16 31 H 0.07 1.24 7.58 -51.93 -0.39 0.84 16 32 H 0.27 7.40 8.32 -40.82 -0.34 7.06 16 33 H 0.18 3.11 8.06 -52.49 -0.42 2.69 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.69 8.13 -51.93 -0.42 0.26 16 37 H 0.15 3.16 6.18 -52.49 -0.32 2.84 16 38 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -34.29 362.28 -5.72 -40.01 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -3.64 Total: 2.98 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.13 Total: 2.81 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.47 Total: -48.80 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.07 Total: -14.36 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.08 Total: -4.53 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.29 -5.72 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538104004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.628 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds