Wall clock time and date at job start Wed Apr 1 2020 03:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47697 * 330.37347 * 3 2 1 5 5 C 1.36966 * 119.99971 * 270.00475 * 4 3 2 6 6 H 1.08000 * 119.99987 * 16.95752 * 5 4 3 7 7 C 1.38978 * 119.99838 * 196.95841 * 5 4 3 8 8 N 1.31408 * 120.00115 * 17.84484 * 7 5 4 9 9 Si 1.86796 * 120.00115 * 197.83993 * 7 5 4 10 10 H 1.48505 * 109.47111 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47166 * 120.00168 * 9 7 5 12 12 H 1.48499 * 109.47315 * 240.00528 * 9 7 5 13 13 C 1.34778 * 120.00012 * 89.99758 * 4 3 2 14 14 O 1.21645 * 120.00479 * 242.76216 * 13 4 3 15 15 C 1.47202 * 119.99437 * 62.76228 * 13 4 3 16 16 C 1.38039 * 126.81875 * 22.58892 * 15 13 4 17 17 N 1.34170 * 107.87365 * 179.97438 * 16 15 13 18 18 C 1.46503 * 125.15630 * 179.97438 * 17 16 15 19 19 N 1.39768 * 109.68913 * 0.02562 * 17 16 15 20 20 C 1.31372 * 109.09499 * 359.97438 * 19 17 16 21 21 C 1.48260 * 126.51231 * 179.97438 * 20 19 17 22 22 C 1.39379 * 120.12518 * 213.80359 * 21 20 19 23 23 C 1.38189 * 119.87304 * 179.97438 * 22 21 20 24 24 F 1.35095 * 119.93840 * 179.97438 * 23 22 21 25 25 C 1.38574 * 120.12455 * 0.02562 * 23 22 21 26 26 C 1.38245 * 120.25898 * 0.02562 * 25 23 22 27 27 C 1.38269 * 120.12279 * 359.70066 * 26 25 23 28 28 F 1.35098 * 120.06552 * 180.29335 * 27 26 25 29 29 H 4.40650 * 5.51289 * 179.97438 * 4 1 2 30 30 H 1.09008 * 109.46746 * 210.37282 * 3 2 1 31 31 H 1.09007 * 109.47082 * 90.37590 * 3 2 1 32 32 H 0.97004 * 120.00095 * 184.96570 * 8 7 5 33 33 H 1.07997 * 126.06533 * 359.71101 * 16 15 13 34 34 H 1.08997 * 109.46758 * 90.00001 * 18 17 16 35 35 H 1.08995 * 109.47211 * 210.00213 * 18 17 16 36 36 H 1.09007 * 109.46961 * 330.00657 * 18 17 16 37 37 H 1.07999 * 120.06499 * 359.97438 * 22 21 20 38 38 H 1.07998 * 119.86937 * 180.02562 * 25 23 22 39 39 H 1.07994 * 119.93933 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.1997 0.6828 5 6 3.3632 -1.1745 2.0330 6 1 2.9373 -0.3878 2.6381 7 6 4.1429 -2.1613 2.6245 8 7 4.9390 -2.9007 1.8854 9 14 4.0594 -2.4364 4.4702 10 1 3.0937 -1.4809 5.0699 11 1 3.6144 -3.8264 4.7438 12 1 5.4033 -2.2209 5.0641 13 6 3.3602 -2.3289 -0.0178 14 8 2.7182 -3.3333 0.2246 15 6 4.3830 -2.3466 -1.0763 16 6 5.4624 -1.4948 -1.1979 17 7 6.1455 -1.8502 -2.2966 18 6 7.3622 -1.1943 -2.7824 19 7 5.5199 -2.9401 -2.9082 20 6 4.4576 -3.2728 -2.2106 21 6 3.5130 -4.3748 -2.5133 22 6 2.1595 -4.2391 -2.2098 23 6 1.2836 -5.2694 -2.4946 24 9 -0.0285 -5.1395 -2.2005 25 6 1.7488 -6.4358 -3.0804 26 6 3.0905 -6.5765 -3.3828 27 6 3.9751 -5.5501 -3.1074 28 9 5.2850 -5.6865 -3.4088 29 1 -1.0498 -0.0002 0.0003 30 1 3.0089 0.8875 0.5197 31 1 3.0093 0.0076 -1.0277 32 1 5.4286 -3.6360 2.2860 33 1 5.7104 -0.6833 -0.5299 34 1 8.2350 -1.6744 -2.3398 35 1 7.4121 -1.2792 -3.8679 36 1 7.3447 -0.1415 -2.5006 37 1 1.7958 -3.3307 -1.7529 38 1 1.0606 -7.2382 -3.3017 39 1 3.4474 -7.4876 -3.8396 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538104004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:28 Heat of formation + Delta-G solvation = 46.630773 kcal Electronic energy + Delta-G solvation = -30328.366189 eV Core-core repulsion = 25876.099245 eV Total energy + Delta-G solvation = -4452.266944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.103 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.94671 -49.92952 -42.02108 -39.93217 -39.61517 -36.59679 -34.64854 -34.38632 -32.89081 -32.12412 -31.42558 -30.75402 -28.14499 -27.74398 -26.34015 -24.75646 -23.76009 -23.02290 -21.37803 -20.92087 -19.33238 -18.95699 -18.59160 -18.24319 -18.00108 -17.42625 -17.17171 -16.90715 -16.43793 -16.36812 -16.24427 -15.95285 -15.63824 -15.49107 -15.38894 -14.97112 -14.72590 -14.18763 -14.14028 -13.89175 -13.82792 -13.55407 -13.45664 -13.36422 -13.20888 -12.87057 -12.81456 -12.52823 -12.24395 -12.10261 -11.81589 -11.42587 -11.13648 -10.93004 -10.87251 -10.43732 -9.91169 -9.61021 -9.41868 -9.19147 -8.16834 -5.61464 -0.34368 -0.02188 0.78320 1.19050 1.41089 1.46597 1.51404 1.54083 1.85997 2.01402 2.32359 2.42968 2.66662 3.00267 3.11908 3.25911 3.28411 3.43716 3.59832 3.73732 3.83509 3.92394 4.09560 4.10939 4.46082 4.47630 4.55197 4.61515 4.70222 4.73212 4.81311 4.84618 4.91221 4.97344 5.01257 5.07341 5.20061 5.43488 5.51311 5.73987 6.02444 6.12232 6.55083 6.81487 7.01549 7.43029 7.65325 8.07685 8.92250 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.008652 B = 0.005183 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3235.395263 B = 5400.679409 C = 6299.828426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.226 4.226 3 C 0.233 3.767 4 N -0.562 5.562 5 C -0.294 4.294 6 H 0.088 0.912 7 C -0.020 4.020 8 N -0.900 5.900 9 Si 0.966 3.034 10 H -0.262 1.262 11 H -0.303 1.303 12 H -0.278 1.278 13 C 0.661 3.339 14 O -0.563 6.563 15 C -0.264 4.264 16 C 0.129 3.871 17 N -0.364 5.364 18 C 0.090 3.910 19 N -0.292 5.292 20 C 0.112 3.888 21 C -0.033 4.033 22 C -0.086 4.086 23 C 0.074 3.926 24 F -0.140 7.140 25 C -0.100 4.100 26 C -0.116 4.116 27 C 0.095 3.905 28 F -0.133 7.133 29 H 0.244 0.756 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.256 0.744 33 H 0.200 0.800 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.122 0.878 37 H 0.118 0.882 38 H 0.189 0.811 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.703 1.358 -12.733 12.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.228 4.228 3 C 0.109 3.891 4 N -0.291 5.291 5 C -0.421 4.421 6 H 0.106 0.894 7 C -0.219 4.219 8 N -0.542 5.542 9 Si 0.793 3.207 10 H -0.186 1.186 11 H -0.231 1.231 12 H -0.204 1.204 13 C 0.455 3.545 14 O -0.440 6.440 15 C -0.280 4.280 16 C -0.019 4.019 17 N -0.145 5.145 18 C -0.049 4.049 19 N -0.113 5.113 20 C -0.054 4.054 21 C -0.036 4.036 22 C -0.106 4.106 23 C 0.054 3.946 24 F -0.119 7.119 25 C -0.119 4.119 26 C -0.134 4.134 27 C 0.075 3.925 28 F -0.112 7.112 29 H 0.260 0.740 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.067 0.933 33 H 0.216 0.784 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.206 0.794 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 1.479 0.589 -13.632 13.724 hybrid contribution -0.429 0.061 2.243 2.284 sum 1.050 0.650 -11.389 11.456 Atomic orbital electron populations 1.25630 0.96766 0.99729 1.00903 1.24867 0.96634 1.00943 1.00397 1.18141 0.83111 0.89767 0.98061 1.42614 1.70927 1.08737 1.06819 1.19447 1.26514 1.13410 0.82756 0.89407 1.25663 0.94956 0.98721 1.02536 1.69628 1.26967 1.20166 1.37456 0.85274 0.77844 0.77159 0.80458 1.18599 1.23072 1.20415 1.16702 0.78564 0.82165 0.77102 1.90485 1.48907 1.38048 1.66606 1.21729 1.03541 1.02113 1.00576 1.22991 0.91078 0.98723 0.89066 1.48468 1.22914 1.23954 1.19159 1.22362 0.81379 0.98546 1.02586 1.77127 1.08885 1.03913 1.21394 1.21672 0.94001 0.95690 0.94072 1.17620 0.91790 0.92325 1.01854 1.20902 0.91719 1.00076 0.97940 1.17660 0.78064 0.96237 1.02618 1.91482 1.32417 1.96358 1.91643 1.21403 0.96435 0.96381 0.97662 1.21242 0.91598 0.98991 1.01565 1.17940 0.79042 0.94879 1.00664 1.91494 1.32977 1.95924 1.90781 0.73963 0.87504 0.89364 0.93347 0.78363 0.89806 0.87941 0.85958 0.86372 0.79362 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.29 19.25 74.32 1.43 -5.86 16 2 C -0.23 -8.87 13.67 31.13 0.43 -8.44 16 3 C 0.23 8.99 6.03 84.57 0.51 9.50 16 4 N -0.56 -27.52 2.38 -649.36 -1.55 -29.07 16 5 C -0.29 -15.52 9.62 84.07 0.81 -14.71 16 6 H 0.09 4.44 7.89 -2.91 -0.02 4.42 16 7 C -0.02 -1.07 5.07 84.93 0.43 -0.64 16 8 N -0.90 -51.73 11.11 21.67 0.24 -51.49 16 9 Si 0.97 44.89 29.59 68.60 2.03 46.92 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 13 C 0.66 34.40 3.25 86.60 0.28 34.68 16 14 O -0.56 -33.46 14.23 -4.17 -0.06 -33.52 16 15 C -0.26 -12.10 5.46 -18.78 -0.10 -12.20 16 16 C 0.13 4.85 11.23 84.29 0.95 5.80 16 17 N -0.36 -11.93 3.95 -367.85 -1.45 -13.38 16 18 C 0.09 1.72 11.39 127.77 1.46 3.18 16 19 N -0.29 -11.46 11.82 -44.52 -0.53 -11.99 16 20 C 0.11 4.93 6.79 44.07 0.30 5.22 16 21 C -0.03 -1.35 5.69 -20.02 -0.11 -1.46 16 22 C -0.09 -3.49 7.86 22.53 0.18 -3.31 16 23 C 0.07 2.48 7.29 22.34 0.16 2.64 16 24 F -0.14 -4.81 17.26 44.97 0.78 -4.04 16 25 C -0.10 -2.47 10.02 22.35 0.22 -2.24 16 26 C -0.12 -2.89 10.01 22.28 0.22 -2.67 16 27 C 0.10 3.30 7.28 22.60 0.16 3.47 16 28 F -0.13 -4.80 16.29 44.97 0.73 -4.06 16 29 H 0.24 6.03 7.80 -4.43 -0.03 6.00 16 30 H 0.11 3.60 8.04 -2.38 -0.02 3.58 16 31 H 0.09 3.06 7.58 -2.38 -0.02 3.04 16 32 H 0.26 14.75 8.32 -92.71 -0.77 13.98 16 33 H 0.20 6.66 8.06 -2.91 -0.02 6.63 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.12 1.51 8.13 -2.38 -0.02 1.49 16 37 H 0.12 5.47 6.18 -2.91 -0.02 5.45 16 38 H 0.19 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.19 3.02 8.06 -2.91 -0.02 3.00 16 Total: -1.00 -79.39 362.28 8.63 -70.76 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 1.11 Total: 16.90 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 7.33 Total: 12.97 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.29 Total: -105.93 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.06 Total: -33.52 kcal Atomic # 9 Polarization: -9.61 SS G_CDS: 1.51 Total: -8.10 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -79.39 8.63 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538104004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.396 kcal (2) G-P(sol) polarization free energy of solvation -79.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds