Wall clock time and date at job start Wed Apr 1 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34760 * 116.99859 * 2 1 4 4 O 1.21521 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.47341 * 120.00244 * 180.02562 * 3 2 1 6 6 N 1.32050 * 126.44641 * 0.02562 * 5 3 2 7 7 N 1.28456 * 110.21039 * 179.97438 * 6 5 3 8 8 C 1.40080 * 124.93449 * 180.02562 * 7 6 5 9 9 C 1.38867 * 120.06470 * 0.02562 * 8 7 6 10 10 C 1.38115 * 119.93263 * 179.97438 * 9 8 7 11 11 C 1.38287 * 120.06645 * 359.97438 * 10 9 8 12 12 C 1.38292 * 120.13854 * 0.02562 * 11 10 9 13 13 C 1.38105 * 120.06890 * 359.97438 * 12 11 10 14 14 C 1.36124 * 110.13768 * 0.26823 * 7 6 5 15 15 C 1.35747 * 107.07606 * 359.56758 * 14 7 6 16 16 O 1.36072 * 127.26303 * 180.12556 * 15 14 7 17 17 C 1.42899 * 116.99768 * 0.34116 * 16 15 14 18 18 C 1.50704 * 109.47178 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99498 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99869 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99675 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00420 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99583 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47137 * 90.00257 * 25 23 21 27 27 H 1.48501 * 109.46926 * 210.00030 * 25 23 21 28 28 H 1.48493 * 109.47195 * 329.99794 * 25 23 21 29 29 H 1.08997 * 109.47506 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 300.00504 * 1 2 3 31 31 H 1.09004 * 109.47229 * 60.00321 * 1 2 3 32 32 H 1.07997 * 120.03686 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.97127 * 179.72310 * 10 9 8 34 34 H 1.07995 * 119.93399 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.96498 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.03419 * 180.02562 * 13 12 11 37 37 H 1.08004 * 126.45651 * 179.73416 * 14 7 6 38 38 H 1.09003 * 109.47524 * 299.99989 * 17 16 15 39 39 H 1.09007 * 109.47373 * 59.99983 * 17 16 15 40 40 H 0.97005 * 119.99794 * 359.97438 * 20 18 17 41 41 H 0.96998 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5352 1.2779 -0.0006 6 7 4.3742 0.2583 -0.0016 7 7 5.5870 0.6816 -0.0024 8 6 6.7228 -0.1383 -0.0040 9 6 6.5834 -1.5200 -0.0055 10 6 7.7051 -2.3258 -0.0077 11 6 8.9660 -1.7581 -0.0090 12 6 9.1082 -0.3825 -0.0075 13 6 7.9904 0.4287 -0.0053 14 6 5.6084 2.0426 0.0041 15 6 4.3172 2.4616 -0.0007 16 8 3.8677 3.7459 0.0006 17 6 4.8552 4.7788 0.0002 18 6 4.1754 6.1238 0.0023 19 8 2.9644 6.1911 0.0036 20 7 4.9131 7.2517 0.0018 21 6 4.2946 8.4753 0.0033 22 1 3.2162 8.5352 0.0044 23 6 5.0552 9.6381 0.0033 24 7 6.3672 9.5652 0.0014 25 14 4.2124 11.3053 0.0060 26 1 3.9911 11.7458 1.4068 27 1 5.0702 12.2947 -0.6943 28 1 2.9061 11.2007 -0.6923 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 5.5989 -1.9640 -0.0058 33 1 7.5974 -3.4004 -0.0044 34 1 9.8417 -2.3902 -0.0103 35 1 10.0943 0.0579 -0.0089 36 1 8.1020 1.5028 -0.0046 37 1 6.4870 2.6707 0.0091 38 1 5.4787 4.6858 0.8894 39 1 5.4768 4.6869 -0.8906 40 1 5.8816 7.1978 0.0004 41 1 6.8982 10.3769 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559467649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:05 Heat of formation + Delta-G solvation = -29.067290 kcal Electronic energy + Delta-G solvation = -28665.605266 eV Core-core repulsion = 24321.143323 eV Total energy + Delta-G solvation = -4344.461943 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.18703 -40.11152 -39.48296 -38.81690 -37.38884 -36.27156 -34.01554 -33.80040 -31.74779 -31.34905 -30.33575 -29.90802 -28.17496 -27.70649 -24.97494 -24.58564 -23.38778 -22.26507 -21.21093 -20.55467 -19.43385 -18.97664 -18.03560 -17.56378 -17.11336 -16.88114 -16.63281 -16.37907 -16.03084 -15.78854 -15.40955 -15.16981 -14.74353 -14.71343 -14.31414 -13.94850 -13.84947 -13.63192 -13.50819 -13.10517 -12.89400 -12.76950 -12.19677 -12.10334 -11.79940 -11.65380 -11.58785 -11.28399 -11.20942 -11.01606 -10.75568 -10.60409 -10.41603 -10.27319 -10.26550 -9.57529 -9.50497 -9.05792 -8.46873 -8.18401 -8.04743 -6.47948 -3.89068 0.30376 0.84847 1.45513 1.92149 1.99750 2.58304 3.08948 3.15489 3.17945 3.25706 3.32852 3.34599 3.77079 3.98605 4.16279 4.35103 4.45898 4.52598 4.67035 4.82825 4.86848 4.92148 5.01714 5.08689 5.10775 5.15387 5.17320 5.25713 5.39060 5.49920 5.51670 5.63231 5.67523 5.82369 5.85975 6.00029 6.10083 6.21287 6.32228 6.61877 7.32973 7.50760 7.51009 7.87950 7.97507 8.52506 9.10901 9.42297 9.93644 10.69638 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.002715 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.457319 B =10311.496765 C =13165.505576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.350 6.350 3 C 0.548 3.452 4 O -0.466 6.466 5 C -0.003 4.003 6 N -0.211 5.211 7 N -0.214 5.214 8 C 0.139 3.861 9 C -0.109 4.109 10 C -0.099 4.099 11 C -0.121 4.121 12 C -0.096 4.096 13 C -0.123 4.123 14 C -0.113 4.113 15 C 0.094 3.906 16 O -0.242 6.242 17 C 0.047 3.953 18 C 0.441 3.559 19 O -0.565 6.565 20 N -0.556 5.556 21 C -0.299 4.299 22 H 0.106 0.894 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.933 3.067 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.268 1.268 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.130 0.870 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.192 0.808 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.393 0.607 41 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.876 -25.127 -0.023 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.266 6.266 3 C 0.389 3.611 4 O -0.349 6.349 5 C -0.160 4.160 6 N -0.049 5.049 7 N -0.002 5.002 8 C 0.049 3.951 9 C -0.129 4.129 10 C -0.118 4.118 11 C -0.139 4.139 12 C -0.114 4.114 13 C -0.144 4.144 14 C -0.251 4.251 15 C 0.039 3.961 16 O -0.150 6.150 17 C -0.032 4.032 18 C 0.226 3.774 19 O -0.447 6.447 20 N -0.194 5.194 21 C -0.428 4.428 22 H 0.123 0.877 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.759 3.241 26 H -0.203 1.203 27 H -0.209 1.209 28 H -0.193 1.193 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.161 0.839 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.209 0.791 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.227 0.773 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.740 -25.618 -0.031 26.254 hybrid contribution 0.433 1.824 0.015 1.875 sum 6.173 -23.794 -0.016 24.582 Atomic orbital electron populations 1.23298 0.75941 1.03561 1.02919 1.86597 1.23352 1.32017 1.84621 1.19279 0.85862 0.81937 0.74058 1.91029 1.64694 1.35531 1.43597 1.20207 0.91422 0.88066 1.16326 1.73688 0.88853 1.25538 1.16788 1.42105 1.03540 1.04543 1.49970 1.17663 0.83182 0.89952 1.04307 1.21023 1.00902 0.90698 1.00280 1.21105 0.91652 1.00229 0.98792 1.21336 0.97760 0.95154 0.99677 1.21041 0.98254 0.93480 0.98665 1.20942 0.90013 1.01200 1.02235 1.22617 0.99136 0.84487 1.18869 1.18759 0.90060 0.86439 1.00846 1.86419 1.32088 1.08619 1.87864 1.22624 0.90774 0.87577 1.02205 1.19244 0.88152 0.84178 0.85869 1.90616 1.13494 1.86415 1.54187 1.41674 1.08924 1.04289 1.64520 1.19731 0.93994 0.81283 1.47802 0.87656 1.25275 0.95420 1.00033 0.97046 1.69603 1.04242 1.30074 1.50262 0.85812 0.79076 0.80688 0.78493 1.20289 1.20852 1.19275 0.88046 0.91680 0.91674 0.83913 0.84767 0.85186 0.84597 0.84552 0.79060 0.90369 0.90356 0.77327 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.35 -4.97 10.58 -40.65 -0.43 -5.40 16 3 C 0.55 9.53 7.96 34.43 0.27 9.80 16 4 O -0.47 -9.68 16.32 -21.70 -0.35 -10.03 16 5 C 0.00 -0.05 7.16 -82.69 -0.59 -0.64 16 6 N -0.21 -3.11 11.17 33.45 0.37 -2.73 16 7 N -0.21 -2.76 3.52 -10.40 -0.04 -2.80 16 8 C 0.14 1.42 6.66 -83.62 -0.56 0.87 16 9 C -0.11 -0.96 9.59 -39.39 -0.38 -1.34 16 10 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 11 C -0.12 -0.68 10.04 -39.54 -0.40 -1.07 16 12 C -0.10 -0.59 10.04 -39.61 -0.40 -0.98 16 13 C -0.12 -0.98 9.43 -39.40 -0.37 -1.35 16 14 C -0.11 -1.48 9.91 -16.54 -0.16 -1.65 16 15 C 0.09 1.61 7.05 -39.09 -0.28 1.33 16 16 O -0.24 -4.96 9.28 -43.47 -0.40 -5.36 16 17 C 0.05 0.87 5.63 36.01 0.20 1.07 16 18 C 0.44 10.85 7.86 -10.98 -0.09 10.76 16 19 O -0.56 -16.61 16.07 -14.36 -0.23 -16.85 16 20 N -0.56 -14.03 5.29 -10.96 -0.06 -14.08 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 22 H 0.11 3.10 7.16 -52.49 -0.38 2.73 16 23 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 24 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 25 Si 0.93 20.96 29.55 -169.99 -5.02 15.93 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.27 7.64 -52.49 -0.40 0.87 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 35 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.14 0.89 6.65 -52.49 -0.35 0.54 16 37 H 0.19 1.82 6.64 -52.48 -0.35 1.47 16 38 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 39 H 0.08 1.19 8.12 -51.93 -0.42 0.76 16 40 H 0.39 9.17 7.90 -40.82 -0.32 8.85 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -36.98 372.37 -6.45 -43.44 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.31 Total: 6.28 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -2.31 Total: 9.28 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.00 Total: -42.90 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.42 Total: -37.64 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.98 -6.45 -43.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559467649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.368 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds