Wall clock time and date at job start Wed Apr 1 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34760 * 116.99859 * 2 1 4 4 O 1.21521 * 120.00089 * 359.97438 * 3 2 1 5 5 C 1.47341 * 120.00244 * 180.02562 * 3 2 1 6 6 N 1.32050 * 126.44641 * 0.02562 * 5 3 2 7 7 N 1.28456 * 110.21039 * 179.97438 * 6 5 3 8 8 C 1.40080 * 124.93449 * 180.02562 * 7 6 5 9 9 C 1.38867 * 120.06470 * 0.02562 * 8 7 6 10 10 C 1.38115 * 119.93263 * 179.97438 * 9 8 7 11 11 C 1.38287 * 120.06645 * 359.97438 * 10 9 8 12 12 C 1.38292 * 120.13854 * 0.02562 * 11 10 9 13 13 C 1.38105 * 120.06890 * 359.97438 * 12 11 10 14 14 C 1.36124 * 110.13768 * 0.26823 * 7 6 5 15 15 C 1.35747 * 107.07606 * 359.56758 * 14 7 6 16 16 O 1.36072 * 127.26303 * 180.12556 * 15 14 7 17 17 C 1.42899 * 116.99768 * 0.34116 * 16 15 14 18 18 C 1.50704 * 109.47178 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99498 * 359.97438 * 18 17 16 20 20 N 1.34777 * 120.00161 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99907 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99869 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99675 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00420 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99583 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47137 * 90.00257 * 25 23 21 27 27 H 1.48501 * 109.46926 * 210.00030 * 25 23 21 28 28 H 1.48493 * 109.47195 * 329.99794 * 25 23 21 29 29 H 1.08997 * 109.47506 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 300.00504 * 1 2 3 31 31 H 1.09004 * 109.47229 * 60.00321 * 1 2 3 32 32 H 1.07997 * 120.03686 * 0.02562 * 9 8 7 33 33 H 1.07997 * 119.97127 * 179.72310 * 10 9 8 34 34 H 1.07995 * 119.93399 * 179.97438 * 11 10 9 35 35 H 1.07999 * 119.96498 * 180.02562 * 12 11 10 36 36 H 1.07997 * 120.03419 * 180.02562 * 13 12 11 37 37 H 1.08004 * 126.45651 * 179.73416 * 14 7 6 38 38 H 1.09003 * 109.47524 * 299.99989 * 17 16 15 39 39 H 1.09007 * 109.47373 * 59.99983 * 17 16 15 40 40 H 0.97005 * 119.99794 * 359.97438 * 20 18 17 41 41 H 0.96998 * 120.00302 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5352 1.2779 -0.0006 6 7 4.3742 0.2583 -0.0016 7 7 5.5870 0.6816 -0.0024 8 6 6.7228 -0.1383 -0.0040 9 6 6.5834 -1.5200 -0.0055 10 6 7.7051 -2.3258 -0.0077 11 6 8.9660 -1.7581 -0.0090 12 6 9.1082 -0.3825 -0.0075 13 6 7.9904 0.4287 -0.0053 14 6 5.6084 2.0426 0.0041 15 6 4.3172 2.4616 -0.0007 16 8 3.8677 3.7459 0.0006 17 6 4.8552 4.7788 0.0002 18 6 4.1754 6.1238 0.0023 19 8 2.9644 6.1911 0.0036 20 7 4.9131 7.2517 0.0018 21 6 4.2946 8.4753 0.0033 22 1 3.2162 8.5352 0.0044 23 6 5.0552 9.6381 0.0033 24 7 6.3672 9.5652 0.0014 25 14 4.2124 11.3053 0.0060 26 1 3.9911 11.7458 1.4068 27 1 5.0702 12.2947 -0.6943 28 1 2.9061 11.2007 -0.6923 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 5.5989 -1.9640 -0.0058 33 1 7.5974 -3.4004 -0.0044 34 1 9.8417 -2.3902 -0.0103 35 1 10.0943 0.0579 -0.0089 36 1 8.1020 1.5028 -0.0046 37 1 6.4870 2.6707 0.0091 38 1 5.4787 4.6858 0.8894 39 1 5.4768 4.6869 -0.8906 40 1 5.8816 7.1978 0.0004 41 1 6.8982 10.3769 0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559467649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:04 Heat of formation + Delta-G solvation = -53.956613 kcal Electronic energy + Delta-G solvation = -28666.684548 eV Core-core repulsion = 24321.143323 eV Total energy + Delta-G solvation = -4345.541225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.24719 -41.32217 -40.63307 -40.00437 -39.00902 -37.54313 -36.05058 -34.71060 -33.40050 -32.41506 -31.30198 -30.83369 -29.64506 -28.67408 -26.59970 -25.84652 -24.14110 -23.12328 -22.29329 -21.70749 -21.12846 -20.03686 -19.95895 -18.71921 -18.18605 -18.05306 -17.82490 -17.55700 -17.23745 -17.09688 -16.71022 -16.63357 -15.94313 -15.70415 -15.49202 -15.21831 -14.98678 -14.81218 -14.55731 -14.40921 -14.29195 -13.74599 -13.56250 -13.19070 -13.08458 -12.98793 -12.59723 -12.55060 -12.47191 -12.45372 -12.13086 -12.00477 -11.92361 -11.87487 -11.58716 -11.22227 -10.48315 -10.09912 -10.02632 -9.98625 -9.18791 -8.52213 -6.01528 -0.50790 0.33644 0.35657 0.96782 1.04504 1.35586 1.40379 1.45863 1.55209 1.83418 1.90670 1.92858 2.33655 2.76569 2.98284 3.13512 3.14740 3.60727 3.70541 3.85362 3.90875 3.98020 4.14828 4.21938 4.24110 4.28231 4.29622 4.30184 4.41055 4.46207 4.56489 4.61495 4.68425 5.03747 5.12713 5.19741 5.35101 5.37527 5.50975 5.55939 5.87454 5.94573 6.13168 6.38568 6.52949 6.66625 7.05563 7.42531 7.99599 8.64792 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.002715 C = 0.002126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.457319 B =10311.496765 C =13165.505576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.550 3.450 4 O -0.515 6.515 5 C -0.038 4.038 6 N -0.212 5.212 7 N -0.200 5.200 8 C 0.096 3.904 9 C -0.121 4.121 10 C -0.101 4.101 11 C -0.109 4.109 12 C -0.096 4.096 13 C -0.123 4.123 14 C -0.084 4.084 15 C 0.058 3.942 16 O -0.283 6.283 17 C 0.059 3.941 18 C 0.433 3.567 19 O -0.625 6.625 20 N -0.556 5.556 21 C -0.339 4.339 22 H 0.076 0.924 23 C -0.005 4.005 24 N -0.912 5.912 25 Si 0.993 3.007 26 H -0.269 1.269 27 H -0.266 1.266 28 H -0.276 1.276 29 H 0.144 0.856 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.158 0.842 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.152 0.848 37 H 0.233 0.767 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.403 0.597 41 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -26.594 -0.004 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.263 6.263 3 C 0.393 3.607 4 O -0.402 6.402 5 C -0.193 4.193 6 N -0.052 5.052 7 N 0.013 4.987 8 C 0.007 3.993 9 C -0.140 4.140 10 C -0.119 4.119 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.143 4.143 14 C -0.223 4.223 15 C 0.004 3.996 16 O -0.193 6.193 17 C -0.019 4.019 18 C 0.219 3.781 19 O -0.511 6.511 20 N -0.194 5.194 21 C -0.468 4.468 22 H 0.094 0.906 23 C -0.206 4.206 24 N -0.552 5.552 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.190 1.190 28 H -0.201 1.201 29 H 0.162 0.838 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.150 0.850 33 H 0.176 0.824 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.169 0.831 37 H 0.249 0.751 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.238 0.762 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.551 -27.145 -0.011 28.776 hybrid contribution -0.536 2.045 0.009 2.114 sum 9.015 -25.100 -0.002 26.670 Atomic orbital electron populations 1.23672 0.73888 1.06220 1.02716 1.86595 1.25415 1.30449 1.83859 1.19538 0.86390 0.81986 0.72789 1.90990 1.65796 1.37066 1.46322 1.20273 0.91464 0.88895 1.18664 1.73666 0.89515 1.24838 1.17165 1.42501 1.03711 1.04981 1.47507 1.18096 0.82944 0.90340 1.07877 1.21145 1.01517 0.90647 1.00726 1.21425 0.91244 1.01290 0.97965 1.21794 0.98390 0.95524 0.96962 1.21452 0.98861 0.93693 0.97476 1.21245 0.89403 1.02375 1.01326 1.23109 0.98773 0.84847 1.15611 1.18938 0.91756 0.85087 1.03832 1.86332 1.33700 1.10232 1.89064 1.22512 0.89916 0.83757 1.05709 1.20325 0.87660 0.86244 0.83828 1.90576 1.16351 1.87712 1.56470 1.41658 1.09314 1.04055 1.64364 1.19642 0.93185 0.83246 1.50708 0.90602 1.26007 0.96099 1.02701 0.95749 1.69637 1.04844 1.31426 1.49272 0.84937 0.77931 0.76741 0.78792 1.19479 1.19004 1.20122 0.83840 0.91948 0.91944 0.84984 0.82438 0.82101 0.81786 0.83079 0.75101 0.86603 0.86606 0.76209 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.57 113.37 1.20 1.79 16 2 O -0.35 -10.36 10.58 -56.70 -0.60 -10.96 16 3 C 0.55 20.48 7.96 70.22 0.56 21.04 16 4 O -0.52 -23.21 16.32 22.08 0.36 -22.85 16 5 C -0.04 -1.35 7.16 42.40 0.30 -1.05 16 6 N -0.21 -6.33 11.17 -48.10 -0.54 -6.87 16 7 N -0.20 -4.94 3.52 -186.83 -0.66 -5.60 16 8 C 0.10 1.78 6.66 38.12 0.25 2.04 16 9 C -0.12 -1.93 9.59 22.39 0.21 -1.72 16 10 C -0.10 -0.96 10.04 22.25 0.22 -0.74 16 11 C -0.11 -0.73 10.04 22.29 0.22 -0.51 16 12 C -0.10 -0.75 10.04 22.25 0.22 -0.53 16 13 C -0.12 -1.54 9.43 22.39 0.21 -1.33 16 14 C -0.08 -2.07 9.91 83.45 0.83 -1.24 16 15 C 0.06 2.02 7.05 22.59 0.16 2.18 16 16 O -0.28 -11.99 9.28 -71.90 -0.67 -12.66 16 17 C 0.06 2.13 5.63 71.24 0.40 2.54 16 18 C 0.43 21.90 7.86 87.66 0.69 22.59 16 19 O -0.62 -38.89 16.07 15.98 0.26 -38.63 16 20 N -0.56 -28.55 5.29 -306.98 -1.62 -30.17 16 21 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 22 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 23 C 0.00 -0.24 5.50 84.93 0.47 0.22 16 24 N -0.91 -47.67 13.05 21.66 0.28 -47.39 16 25 Si 0.99 42.78 29.55 68.60 2.03 44.81 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 29 H 0.14 1.78 8.14 -2.39 -0.02 1.77 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.13 2.32 7.64 -2.91 -0.02 2.30 16 33 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.16 0.13 8.06 -2.91 -0.02 0.10 16 35 H 0.16 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.15 1.34 6.65 -2.91 -0.02 1.32 16 37 H 0.23 3.48 6.64 -2.91 -0.02 3.46 16 38 H 0.12 3.25 8.11 -2.39 -0.02 3.23 16 39 H 0.12 3.26 8.12 -2.38 -0.02 3.24 16 40 H 0.40 18.69 7.90 -92.70 -0.73 17.96 16 41 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -86.92 372.37 5.98 -80.94 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.37 Total: 22.71 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.77 Total: 26.67 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -2.53 Total: -90.02 kcal Atomic # 8 Polarization: -84.45 SS G_CDS: -0.65 Total: -85.10 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -86.92 5.98 -80.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559467649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.980 kcal (2) G-P(sol) polarization free energy of solvation -86.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds