Wall clock time and date at job start Wed Apr 1 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.47236 * 2 1 4 4 C 1.34133 * 125.66471 * 125.00240 * 3 2 1 5 5 C 1.38182 * 107.53616 * 179.97438 * 4 3 2 6 6 C 1.47083 * 126.46445 * 179.97438 * 5 4 3 7 7 O 1.21550 * 119.99756 * 180.02562 * 6 5 4 8 8 O 1.34775 * 119.99771 * 0.04006 * 6 5 4 9 9 C 1.41888 * 107.07546 * 359.97438 * 5 4 3 10 10 N 1.39671 * 126.08558 * 179.97438 * 9 5 4 11 11 C 1.34774 * 120.00284 * 180.02562 * 10 9 5 12 12 O 1.21603 * 120.00007 * 0.02562 * 11 10 9 13 13 C 1.47502 * 120.00260 * 179.72840 * 11 10 9 14 14 C 1.39679 * 120.19704 * 0.27218 * 13 11 10 15 15 C 1.37821 * 119.91413 * 180.02562 * 14 13 11 16 16 C 1.38574 * 120.32958 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40269 * 359.97438 * 16 15 14 18 18 C 1.38839 * 120.07593 * 359.72431 * 17 16 15 19 19 O 1.35517 * 120.16388 * 180.27250 * 18 17 16 20 20 C 1.34816 * 117.00211 * 354.39895 * 19 18 17 21 21 H 1.07996 * 119.99782 * 5.04588 * 20 19 18 22 22 C 1.38697 * 119.99867 * 185.05166 * 20 19 18 23 23 N 1.31521 * 119.99771 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00010 * 359.97438 * 22 20 19 25 25 H 1.48494 * 109.47215 * 90.00044 * 24 22 20 26 26 H 1.48507 * 109.46788 * 209.99742 * 24 22 20 27 27 H 1.48498 * 109.47111 * 329.99608 * 24 22 20 28 28 N 1.30926 * 107.83038 * 0.22710 * 9 5 4 29 29 H 1.08998 * 109.46734 * 60.00170 * 1 2 3 30 30 H 1.08996 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47035 * 300.00426 * 1 2 3 32 32 H 1.08997 * 109.46763 * 239.99542 * 2 1 3 33 33 H 1.09008 * 109.46761 * 119.99877 * 2 1 3 34 34 H 1.08001 * 126.23327 * 0.02855 * 4 3 2 35 35 H 0.96708 * 116.99736 * 179.97438 * 8 6 5 36 36 H 0.97000 * 120.00424 * 0.02562 * 10 9 5 37 37 H 1.08001 * 120.04283 * 0.02562 * 14 13 11 38 38 H 1.08008 * 119.83761 * 179.97438 * 15 14 13 39 39 H 1.07995 * 119.79987 * 179.97438 * 16 15 14 40 40 H 1.08008 * 119.96468 * 180.02562 * 17 16 15 41 41 H 0.96996 * 120.00042 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8684 1.9101 0.8926 5 6 3.0742 3.2303 0.5401 6 6 3.9344 4.1977 1.2383 7 8 4.0293 5.3364 0.8239 8 8 4.6176 3.8213 2.3375 9 6 2.2990 3.4767 -0.6225 10 7 2.2144 4.6876 -1.3134 11 6 1.4357 4.7853 -2.4091 12 8 0.8064 3.8194 -2.7959 13 6 1.3416 6.0658 -3.1352 14 6 2.0623 7.1781 -2.6943 15 6 1.9697 8.3718 -3.3769 16 6 1.1641 8.4751 -4.4997 17 6 0.4462 7.3845 -4.9471 18 6 0.5319 6.1722 -4.2759 19 8 -0.1679 5.0987 -4.7168 20 6 -1.0185 5.3020 -5.7428 21 1 -1.0587 6.2659 -6.2281 22 6 -1.8422 4.2731 -6.1749 23 7 -2.6724 4.4716 -7.1755 24 14 -1.7724 2.6057 -5.3358 25 1 -2.7421 2.5762 -4.2117 26 1 -2.1174 1.5439 -6.3152 27 1 -0.4021 2.3712 -4.8138 28 7 1.6729 2.3685 -0.9292 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 3.3121 1.3973 1.7333 35 1 5.1702 4.4920 2.7619 36 1 2.7160 5.4583 -1.0047 37 1 2.6912 7.1028 -1.8196 38 1 2.5271 9.2312 -3.0347 39 1 1.0975 9.4148 -5.0279 40 1 -0.1792 7.4729 -5.8233 41 1 -3.2482 3.7520 -7.4780 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573846496.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:21 Heat of formation + Delta-G solvation = -61.767214 kcal Electronic energy + Delta-G solvation = -29879.024559 eV Core-core repulsion = 25533.144641 eV Total energy + Delta-G solvation = -4345.879918 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.72592 -41.42856 -40.58625 -39.99983 -38.23052 -37.01218 -36.28163 -34.67005 -34.53944 -32.37082 -31.56093 -30.85730 -30.34140 -27.38271 -25.74195 -25.25869 -24.04898 -23.06200 -22.73901 -21.66620 -20.80781 -19.83062 -19.54347 -18.76370 -18.62537 -17.97380 -17.54923 -17.08654 -16.80006 -16.50312 -16.30241 -16.05323 -15.97760 -15.81980 -15.51067 -15.44175 -14.87419 -14.63387 -14.53381 -14.28403 -14.09604 -14.01823 -13.54607 -13.19377 -13.05461 -12.90370 -12.66315 -12.53255 -12.45432 -12.43651 -12.08344 -11.95898 -11.82651 -11.66302 -11.48682 -11.00712 -10.80358 -10.16479 -9.97322 -9.54506 -9.20221 -8.61638 -6.29960 -0.09887 0.35491 0.59322 0.95884 1.13467 1.19293 1.25711 1.55232 1.88038 1.90693 2.26628 2.27813 2.38561 2.71849 2.94565 3.10595 3.25451 3.68015 3.84310 3.94801 4.02963 4.10139 4.21005 4.25980 4.31147 4.42404 4.46841 4.56276 4.70890 4.74189 4.78610 4.87682 4.99230 5.20930 5.23299 5.43209 5.49429 5.56762 5.64869 5.67627 5.79332 5.89212 6.03405 6.10307 6.69446 6.75686 7.11569 7.16393 7.53912 8.48717 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009659 B = 0.004363 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.104023 B = 6416.788348 C = 9242.242997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.120 3.880 3 N -0.350 5.350 4 C 0.178 3.822 5 C -0.333 4.333 6 C 0.575 3.425 7 O -0.561 6.561 8 O -0.498 6.498 9 C 0.335 3.665 10 N -0.629 5.629 11 C 0.546 3.454 12 O -0.518 6.518 13 C -0.235 4.235 14 C -0.033 4.033 15 C -0.185 4.185 16 C -0.034 4.034 17 C -0.246 4.246 18 C 0.168 3.832 19 O -0.209 6.209 20 C -0.403 4.403 21 H 0.097 0.903 22 C 0.031 3.969 23 N -0.907 5.907 24 Si 0.953 3.047 25 H -0.279 1.279 26 H -0.262 1.262 27 H -0.271 1.271 28 N -0.336 5.336 29 H 0.025 0.975 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.253 0.747 35 H 0.434 0.566 36 H 0.433 0.567 37 H 0.153 0.847 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.128 -4.447 23.041 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.002 3.998 3 N -0.128 5.128 4 C 0.023 3.977 5 C -0.348 4.348 6 C 0.421 3.579 7 O -0.454 6.454 8 O -0.311 6.311 9 C 0.076 3.924 10 N -0.283 5.283 11 C 0.337 3.663 12 O -0.391 6.391 13 C -0.240 4.240 14 C -0.051 4.051 15 C -0.203 4.203 16 C -0.053 4.053 17 C -0.265 4.265 18 C 0.115 3.885 19 O -0.113 6.113 20 C -0.479 4.479 21 H 0.114 0.886 22 C -0.170 4.170 23 N -0.547 5.547 24 Si 0.778 3.222 25 H -0.205 1.205 26 H -0.187 1.187 27 H -0.196 1.196 28 N -0.166 5.166 29 H 0.044 0.956 30 H 0.125 0.875 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.180 0.820 34 H 0.269 0.731 35 H 0.296 0.704 36 H 0.276 0.724 37 H 0.171 0.829 38 H 0.187 0.813 39 H 0.176 0.824 40 H 0.140 0.860 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 14.388 -6.137 21.498 26.586 hybrid contribution 0.379 0.706 0.297 0.855 sum 14.766 -5.431 21.795 26.881 Atomic orbital electron populations 1.22047 0.94577 1.04149 1.01673 1.22350 0.95723 0.74607 1.07130 1.48956 1.33398 1.11115 1.19284 1.24008 0.88588 0.91315 0.93828 1.19097 1.15449 0.96808 1.03422 1.19310 0.76204 0.84593 0.77768 1.90807 1.65127 1.22126 1.67370 1.84464 1.58402 1.48612 1.39648 1.19484 0.94195 0.87414 0.91294 1.43008 1.47509 1.10938 1.26873 1.18740 0.78751 0.88868 0.79955 1.90924 1.43103 1.39397 1.65684 1.19033 1.10108 0.95308 0.99533 1.21314 0.94535 0.90898 0.98392 1.21232 1.03327 0.98417 0.97357 1.21499 0.91477 0.97444 0.94832 1.21354 1.07480 0.93512 1.04129 1.19657 0.90081 0.87353 0.91453 1.83769 1.49249 1.31702 1.46618 1.20934 1.16388 1.01529 1.09043 0.88587 1.24972 0.94114 1.01762 0.96165 1.69671 1.23237 1.35403 1.26371 0.85451 0.79490 0.79362 0.77914 1.20531 1.18694 1.19557 1.78074 1.25947 0.97250 1.15285 0.95557 0.87533 0.91998 0.89070 0.82031 0.73094 0.70373 0.72394 0.82908 0.81350 0.82410 0.86029 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 10.08 71.98 0.73 -2.38 16 2 C 0.12 1.70 7.20 86.38 0.62 2.32 16 3 N -0.35 -8.12 3.64 -346.27 -1.26 -9.39 16 4 C 0.18 2.92 11.27 84.33 0.95 3.87 16 5 C -0.33 -8.21 6.14 -20.07 -0.12 -8.33 16 6 C 0.57 12.06 8.32 70.14 0.58 12.65 16 7 O -0.56 -14.79 15.99 19.67 0.31 -14.47 16 8 O -0.50 -5.43 13.26 -56.86 -0.75 -6.18 16 9 C 0.33 11.84 7.78 133.95 1.04 12.88 16 10 N -0.63 -23.54 5.36 -309.76 -1.66 -25.20 16 11 C 0.55 25.41 7.73 86.69 0.67 26.08 16 12 O -0.52 -29.24 13.88 16.86 0.23 -29.01 16 13 C -0.24 -10.28 5.89 -19.99 -0.12 -10.40 16 14 C -0.03 -1.05 9.54 22.52 0.21 -0.84 16 15 C -0.19 -5.10 10.02 22.25 0.22 -4.88 16 16 C -0.03 -1.10 10.03 22.30 0.22 -0.87 16 17 C -0.25 -10.74 9.16 22.36 0.20 -10.54 16 18 C 0.17 8.54 6.66 22.91 0.15 8.69 16 19 O -0.21 -12.66 6.67 0.86 0.01 -12.66 16 20 C -0.40 -25.15 9.95 67.93 0.68 -24.48 16 21 H 0.10 5.99 5.44 -2.91 -0.02 5.97 16 22 C 0.03 1.90 5.49 84.85 0.47 2.36 16 23 N -0.91 -56.18 13.96 21.62 0.30 -55.88 16 24 Si 0.95 52.63 28.62 68.60 1.96 54.59 16 25 H -0.28 -15.34 7.11 99.48 0.71 -14.63 16 26 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 27 H -0.27 -16.35 7.11 99.48 0.71 -15.64 16 28 N -0.34 -12.70 10.54 -53.93 -0.57 -13.27 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.16 0.34 8.06 -2.38 -0.02 0.32 16 34 H 0.25 0.81 8.06 -2.91 -0.02 0.78 16 35 H 0.43 0.92 9.11 -74.05 -0.67 0.25 16 36 H 0.43 13.77 4.98 -92.71 -0.46 13.31 16 37 H 0.15 3.82 6.40 -2.91 -0.02 3.80 16 38 H 0.17 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 40 H 0.12 5.70 5.64 -2.91 -0.02 5.68 16 41 H 0.29 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -96.24 363.19 5.08 -91.16 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.00 Total: 14.16 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.51 Total: 6.14 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -3.19 Total: -103.73 kcal Atomic # 8 Polarization: -62.12 SS G_CDS: -0.20 Total: -62.32 kcal Atomic # 14 Polarization: 52.63 SS G_CDS: 1.96 Total: 54.59 kcal Total: -96.24 5.08 -91.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573846496.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.393 kcal (2) G-P(sol) polarization free energy of solvation -96.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds