Wall clock time and date at job start Wed Apr 1 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.27934 * 118.23579 * 2 1 4 4 C 1.31187 * 124.23874 * 179.97438 * 3 2 1 5 5 C 1.47471 * 120.39748 * 179.97438 * 4 3 2 6 6 O 1.21639 * 119.99707 * 185.95775 * 5 4 3 7 7 N 1.34771 * 120.00380 * 5.95525 * 5 4 3 8 8 C 1.36791 * 120.00318 * 175.45269 * 7 5 4 9 9 H 1.08002 * 120.00042 * 142.97820 * 8 7 5 10 10 C 1.39094 * 120.00179 * 323.26482 * 8 7 5 11 11 N 1.31337 * 119.99480 * 341.49839 * 10 8 7 12 12 Si 1.86794 * 120.00316 * 161.50201 * 10 8 7 13 13 H 1.48506 * 109.47093 * 64.99648 * 12 10 8 14 14 H 1.48490 * 109.47400 * 184.99858 * 12 10 8 15 15 H 1.48506 * 109.47122 * 305.00377 * 12 10 8 16 16 C 1.46497 * 120.00018 * 355.46111 * 7 5 4 17 17 C 1.53001 * 109.47035 * 276.84788 * 16 7 5 18 18 C 1.50702 * 109.47208 * 179.97438 * 17 16 7 19 19 O 1.20822 * 120.00203 * 0.02562 * 18 17 16 20 20 O 1.34227 * 119.99602 * 180.02562 * 18 17 16 21 21 C 1.47206 * 119.19999 * 0.25104 * 4 3 2 22 22 C 1.39045 * 122.79493 * 180.29082 * 21 4 3 23 23 C 1.37897 * 119.39909 * 179.76283 * 22 21 4 24 24 C 1.38868 * 120.78955 * 359.69558 * 23 22 21 25 25 C 1.37878 * 120.73698 * 0.02562 * 24 23 22 26 26 C 1.39117 * 119.34166 * 359.97438 * 25 24 23 27 27 C 1.34878 * 118.24203 * 179.97438 * 2 1 3 28 28 O 1.21743 * 120.76881 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47439 * 4.56569 * 1 2 3 30 30 H 1.09002 * 109.47060 * 124.56501 * 1 2 3 31 31 H 1.08998 * 109.47360 * 244.56107 * 1 2 3 32 32 H 0.97001 * 119.99960 * 185.03659 * 11 10 8 33 33 H 1.08999 * 109.47383 * 36.84828 * 16 7 5 34 34 H 1.08997 * 109.47741 * 156.85115 * 16 7 5 35 35 H 1.08999 * 109.47068 * 300.00234 * 17 16 7 36 36 H 1.09010 * 109.46755 * 59.99920 * 17 16 7 37 37 H 0.96706 * 116.99641 * 180.02562 * 20 18 17 38 38 H 1.08005 * 120.30001 * 359.48172 * 22 21 4 39 39 H 1.07997 * 119.60889 * 179.71518 * 23 22 21 40 40 H 1.08001 * 119.63305 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.32678 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1271 0.0000 4 6 3.3749 1.2643 0.0005 5 6 3.9840 2.6074 -0.0001 6 8 5.1895 2.7284 -0.1090 7 7 3.2051 3.7006 0.1199 8 6 3.7759 4.9403 0.2129 9 1 3.3064 5.7881 -0.2636 10 6 4.9642 5.1078 0.9162 11 7 5.3499 4.1969 1.7801 12 14 6.0114 6.6283 0.6321 13 1 5.2667 7.8329 1.0793 14 1 7.2738 6.5115 1.4051 15 1 6.3258 6.7496 -0.8142 16 6 1.7471 3.5615 0.1509 17 6 1.2131 3.4688 -1.2799 18 6 -0.2867 3.3250 -1.2480 19 8 -0.8688 3.2997 -0.1896 20 8 -0.9758 3.2250 -2.3955 21 6 4.2235 0.0615 -0.0046 22 6 5.6128 0.1199 0.0015 23 6 6.3395 -1.0520 0.0012 24 6 5.7004 -2.2849 0.0012 25 6 4.3239 -2.3650 0.0010 26 6 3.5729 -1.1940 0.0014 27 6 2.1032 -1.1882 0.0005 28 8 1.4764 -2.2319 0.0005 29 1 -0.3634 1.0244 -0.0818 30 1 -0.3633 -0.5830 -0.8463 31 1 -0.3634 -0.4414 0.9280 32 1 6.1393 4.3471 2.3234 33 1 1.4800 2.6572 0.6977 34 1 1.3098 4.4282 0.6465 35 1 1.4803 4.3731 -1.8267 36 1 1.6505 2.6020 -1.7755 37 1 -1.9360 3.1348 -2.3245 38 1 6.1180 1.0744 0.0019 39 1 7.4187 -1.0106 0.0012 40 1 6.2880 -3.1910 0.0013 41 1 3.8337 -3.3274 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608140396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:18 Heat of formation + Delta-G solvation = -44.323172 kcal Electronic energy + Delta-G solvation = -31472.843824 eV Core-core repulsion = 27127.720336 eV Total energy + Delta-G solvation = -4345.123488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.47144 -40.06660 -38.70618 -38.24512 -37.21980 -36.04335 -34.70235 -33.26858 -32.29207 -31.02253 -30.34135 -30.11761 -27.58787 -25.68842 -24.95610 -23.72054 -23.33060 -22.01633 -20.93338 -19.97237 -18.70901 -18.30136 -17.97092 -16.97212 -16.68387 -16.29144 -16.13660 -15.88300 -15.45721 -15.26723 -14.86688 -14.38203 -14.00033 -13.94773 -13.78252 -13.52119 -13.30560 -13.18196 -12.94723 -12.57072 -12.42630 -12.27619 -12.03171 -11.90709 -11.58653 -11.43658 -11.39926 -11.29415 -11.02086 -10.86297 -10.80032 -10.45005 -10.37956 -10.23143 -9.30939 -9.19455 -9.03945 -8.88089 -8.26776 -7.79418 -7.34031 -6.34413 -4.02042 0.81475 1.00300 2.11606 2.40328 2.58728 2.95861 3.19073 3.23391 3.28959 3.32367 3.96871 4.06376 4.22564 4.49064 4.64974 4.91025 5.01547 5.09708 5.17066 5.25468 5.35727 5.37054 5.40133 5.51603 5.56634 5.60359 5.68329 5.77737 5.83540 6.00374 6.04862 6.14976 6.31842 6.41665 6.43943 6.59117 6.68238 6.71990 6.92565 7.12513 7.37112 7.81953 7.97214 8.05912 8.62091 8.76089 8.93371 9.36840 10.04460 10.71969 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008389 B = 0.006145 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.946581 B = 4555.230956 C = 7471.249987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.375 5.375 3 N -0.241 5.241 4 C 0.097 3.903 5 C 0.511 3.489 6 O -0.520 6.520 7 N -0.414 5.414 8 C -0.335 4.335 9 H 0.091 0.909 10 C 0.063 3.937 11 N -0.803 5.803 12 Si 0.922 3.078 13 H -0.277 1.277 14 H -0.284 1.284 15 H -0.271 1.271 16 C 0.106 3.894 17 C -0.121 4.121 18 C 0.485 3.515 19 O -0.515 6.515 20 O -0.522 6.522 21 C -0.027 4.027 22 C -0.082 4.082 23 C -0.100 4.100 24 C -0.125 4.125 25 C -0.066 4.066 26 C -0.143 4.143 27 C 0.509 3.491 28 O -0.529 6.529 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.271 0.729 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.403 0.597 38 H 0.179 0.821 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.138 -6.221 -4.987 9.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.193 5.193 3 N -0.064 5.064 4 C -0.081 4.081 5 C 0.299 3.701 6 O -0.398 6.398 7 N -0.133 5.133 8 C -0.463 4.463 9 H 0.109 0.891 10 C -0.150 4.150 11 N -0.436 5.436 12 Si 0.748 3.252 13 H -0.203 1.203 14 H -0.210 1.210 15 H -0.196 1.196 16 C -0.019 4.019 17 C -0.160 4.160 18 C 0.328 3.672 19 O -0.404 6.404 20 O -0.334 6.334 21 C -0.031 4.031 22 C -0.101 4.101 23 C -0.118 4.118 24 C -0.144 4.144 25 C -0.085 4.085 26 C -0.149 4.149 27 C 0.303 3.697 28 O -0.406 6.406 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.261 0.739 38 H 0.196 0.804 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.296 -6.409 -4.686 9.544 hybrid contribution 0.262 -0.071 0.105 0.291 sum -5.034 -6.480 -4.581 9.398 Atomic orbital electron populations 1.22021 0.75027 1.04735 1.03370 1.46096 1.08794 1.01987 1.62415 1.71146 1.12490 1.08736 1.14020 1.23678 0.86584 0.96280 1.01584 1.16582 0.86549 0.80780 0.86213 1.90470 1.13123 1.83261 1.52929 1.43183 1.02952 1.05947 1.61183 1.19254 1.07727 0.85196 1.34078 0.89142 1.25252 0.97977 0.97679 0.94134 1.69833 1.23409 1.33278 1.17088 0.86107 0.79296 0.80886 0.78907 1.20296 1.20954 1.19641 1.21904 0.83090 1.04137 0.92757 1.21819 0.85947 1.05250 1.02971 1.23729 0.91610 0.71065 0.80780 1.90690 1.71552 1.46268 1.31847 1.84609 1.26223 1.85249 1.37317 1.19474 0.94994 0.90638 0.98033 1.22278 0.92515 1.01343 0.94001 1.21513 1.00512 0.92155 0.97665 1.21240 0.94000 0.98167 1.00986 1.20825 0.93544 0.96973 0.97178 1.19966 0.92077 0.94611 1.08257 1.19059 0.88570 0.84013 0.78070 1.90796 1.68642 1.30733 1.50425 0.88548 0.90494 0.90572 0.91896 0.87759 0.90582 0.87783 0.88137 0.73925 0.80406 0.85277 0.85470 0.84815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.26 10.14 59.85 0.61 1.86 16 2 N -0.37 -6.57 3.62 -68.28 -0.25 -6.81 16 3 N -0.24 -4.52 4.93 34.50 0.17 -4.35 16 4 C 0.10 2.01 6.82 -80.74 -0.55 1.46 16 5 C 0.51 12.13 6.77 -12.50 -0.08 12.05 16 6 O -0.52 -13.51 11.00 5.24 0.06 -13.45 16 7 N -0.41 -9.54 2.57 -116.03 -0.30 -9.84 16 8 C -0.33 -8.23 9.28 -15.02 -0.14 -8.37 16 9 H 0.09 2.08 7.90 -52.49 -0.41 1.66 16 10 C 0.06 1.59 4.39 -17.45 -0.08 1.51 16 11 N -0.80 -21.54 11.16 55.50 0.62 -20.92 16 12 Si 0.92 19.83 29.59 -169.99 -5.03 14.80 16 13 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 16 C 0.11 2.04 4.25 -4.04 -0.02 2.02 16 17 C -0.12 -1.92 5.55 -27.88 -0.15 -2.07 16 18 C 0.49 6.86 7.44 36.01 0.27 7.13 16 19 O -0.52 -8.25 15.52 -18.75 -0.29 -8.55 16 20 O -0.52 -5.78 13.42 -39.25 -0.53 -6.31 16 21 C -0.03 -0.53 5.90 -104.75 -0.62 -1.15 16 22 C -0.08 -1.50 9.35 -39.41 -0.37 -1.87 16 23 C -0.10 -1.45 10.01 -39.47 -0.40 -1.84 16 24 C -0.12 -1.65 10.01 -39.48 -0.40 -2.04 16 25 C -0.07 -1.01 9.70 -39.39 -0.38 -1.39 16 26 C -0.14 -2.59 5.90 -104.83 -0.62 -3.21 16 27 C 0.51 9.45 7.68 -12.68 -0.10 9.35 16 28 O -0.53 -10.26 16.60 5.15 0.09 -10.18 16 29 H 0.10 1.33 5.71 -51.93 -0.30 1.03 16 30 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.11 2.07 5.08 -56.09 -0.28 1.79 16 34 H 0.08 1.47 7.94 -51.93 -0.41 1.06 16 35 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.10 1.64 6.98 -51.92 -0.36 1.28 16 37 H 0.40 2.58 9.10 45.56 0.41 3.00 16 38 H 0.18 3.67 5.24 -52.48 -0.28 3.40 16 39 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.84 7.87 -52.49 -0.41 1.43 16 LS Contribution 347.60 15.07 5.24 5.24 Total: -1.00 -31.54 347.60 -6.54 -38.08 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.29 Total: 8.85 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: -3.02 Total: 13.44 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.24 Total: -41.92 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.67 Total: -38.48 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.54 -6.54 -38.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608140396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.246 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds