Wall clock time and date at job start Wed Apr 1 2020 03:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.27934 * 118.23579 * 2 1 4 4 C 1.31187 * 124.23874 * 179.97438 * 3 2 1 5 5 C 1.47471 * 120.39748 * 179.97438 * 4 3 2 6 6 O 1.21639 * 119.99707 * 185.95775 * 5 4 3 7 7 N 1.34771 * 120.00380 * 5.95525 * 5 4 3 8 8 C 1.36791 * 120.00318 * 175.45269 * 7 5 4 9 9 H 1.08002 * 120.00042 * 142.97820 * 8 7 5 10 10 C 1.39094 * 120.00179 * 323.26482 * 8 7 5 11 11 N 1.31337 * 119.99480 * 341.49839 * 10 8 7 12 12 Si 1.86794 * 120.00316 * 161.50201 * 10 8 7 13 13 H 1.48506 * 109.47093 * 64.99648 * 12 10 8 14 14 H 1.48490 * 109.47400 * 184.99858 * 12 10 8 15 15 H 1.48506 * 109.47122 * 305.00377 * 12 10 8 16 16 C 1.46497 * 120.00018 * 355.46111 * 7 5 4 17 17 C 1.53001 * 109.47035 * 276.84788 * 16 7 5 18 18 C 1.50702 * 109.47208 * 179.97438 * 17 16 7 19 19 O 1.20822 * 120.00203 * 0.02562 * 18 17 16 20 20 O 1.34227 * 119.99602 * 180.02562 * 18 17 16 21 21 C 1.47206 * 119.19999 * 0.25104 * 4 3 2 22 22 C 1.39045 * 122.79493 * 180.29082 * 21 4 3 23 23 C 1.37897 * 119.39909 * 179.76283 * 22 21 4 24 24 C 1.38868 * 120.78955 * 359.69558 * 23 22 21 25 25 C 1.37878 * 120.73698 * 0.02562 * 24 23 22 26 26 C 1.39117 * 119.34166 * 359.97438 * 25 24 23 27 27 C 1.34878 * 118.24203 * 179.97438 * 2 1 3 28 28 O 1.21743 * 120.76881 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47439 * 4.56569 * 1 2 3 30 30 H 1.09002 * 109.47060 * 124.56501 * 1 2 3 31 31 H 1.08998 * 109.47360 * 244.56107 * 1 2 3 32 32 H 0.97001 * 119.99960 * 185.03659 * 11 10 8 33 33 H 1.08999 * 109.47383 * 36.84828 * 16 7 5 34 34 H 1.08997 * 109.47741 * 156.85115 * 16 7 5 35 35 H 1.08999 * 109.47068 * 300.00234 * 17 16 7 36 36 H 1.09010 * 109.46755 * 59.99920 * 17 16 7 37 37 H 0.96706 * 116.99641 * 180.02562 * 20 18 17 38 38 H 1.08005 * 120.30001 * 359.48172 * 22 21 4 39 39 H 1.07997 * 119.60889 * 179.71518 * 23 22 21 40 40 H 1.08001 * 119.63305 * 180.02562 * 24 23 22 41 41 H 1.07998 * 120.32678 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1271 0.0000 4 6 3.3749 1.2643 0.0005 5 6 3.9840 2.6074 -0.0001 6 8 5.1895 2.7284 -0.1090 7 7 3.2051 3.7006 0.1199 8 6 3.7759 4.9403 0.2129 9 1 3.3064 5.7881 -0.2636 10 6 4.9642 5.1078 0.9162 11 7 5.3499 4.1969 1.7801 12 14 6.0114 6.6283 0.6321 13 1 5.2667 7.8329 1.0793 14 1 7.2738 6.5115 1.4051 15 1 6.3258 6.7496 -0.8142 16 6 1.7471 3.5615 0.1509 17 6 1.2131 3.4688 -1.2799 18 6 -0.2867 3.3250 -1.2480 19 8 -0.8688 3.2997 -0.1896 20 8 -0.9758 3.2250 -2.3955 21 6 4.2235 0.0615 -0.0046 22 6 5.6128 0.1199 0.0015 23 6 6.3395 -1.0520 0.0012 24 6 5.7004 -2.2849 0.0012 25 6 4.3239 -2.3650 0.0010 26 6 3.5729 -1.1940 0.0014 27 6 2.1032 -1.1882 0.0005 28 8 1.4764 -2.2319 0.0005 29 1 -0.3634 1.0244 -0.0818 30 1 -0.3633 -0.5830 -0.8463 31 1 -0.3634 -0.4414 0.9280 32 1 6.1393 4.3471 2.3234 33 1 1.4800 2.6572 0.6977 34 1 1.3098 4.4282 0.6465 35 1 1.4803 4.3731 -1.8267 36 1 1.6505 2.6020 -1.7755 37 1 -1.9360 3.1348 -2.3245 38 1 6.1180 1.0744 0.0019 39 1 7.4187 -1.0106 0.0012 40 1 6.2880 -3.1910 0.0013 41 1 3.8337 -3.3274 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608140396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:18 Heat of formation + Delta-G solvation = -64.828936 kcal Electronic energy + Delta-G solvation = -31473.733021 eV Core-core repulsion = 27127.720336 eV Total energy + Delta-G solvation = -4346.012684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.90903 -41.23803 -40.32932 -39.54834 -38.75627 -37.14247 -36.37788 -34.79481 -33.92326 -32.34069 -31.74549 -31.59382 -28.93201 -27.32594 -26.46161 -25.21782 -24.62509 -23.42902 -22.24997 -21.50509 -20.21141 -19.66568 -19.12373 -18.49438 -18.08275 -17.74361 -17.53205 -17.13561 -16.87501 -16.60389 -16.56598 -15.67974 -15.60841 -15.41773 -15.32897 -14.91114 -14.59580 -14.57857 -14.23479 -14.04928 -13.85502 -13.57146 -13.33436 -13.24484 -13.11040 -12.98465 -12.73294 -12.71713 -12.61516 -12.40738 -12.24965 -12.11960 -11.77082 -11.56673 -10.93823 -10.63814 -10.61719 -10.15544 -10.05886 -9.18952 -9.16967 -8.22198 -5.94613 -0.52737 -0.37482 0.70808 1.21465 1.26434 1.47842 1.54784 1.59199 1.60597 2.08344 2.33475 2.59936 2.68736 2.93113 3.09425 3.28709 3.54319 3.69975 3.81214 4.02610 4.09689 4.14429 4.18536 4.26352 4.29263 4.36047 4.53071 4.54294 4.57121 4.65691 4.72666 4.81585 4.92996 5.02040 5.20621 5.32650 5.43509 5.44106 5.49997 5.65736 5.85093 6.12258 6.38911 6.91758 7.04529 7.08218 7.20056 7.55342 8.24527 8.85266 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.008389 B = 0.006145 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3336.946581 B = 4555.230956 C = 7471.249987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.375 5.375 3 N -0.220 5.220 4 C 0.073 3.927 5 C 0.509 3.491 6 O -0.550 6.550 7 N -0.429 5.429 8 C -0.356 4.356 9 H 0.100 0.900 10 C 0.018 3.982 11 N -0.846 5.846 12 Si 0.981 3.019 13 H -0.261 1.261 14 H -0.289 1.289 15 H -0.273 1.273 16 C 0.111 3.889 17 C -0.115 4.115 18 C 0.499 3.501 19 O -0.535 6.535 20 O -0.511 6.511 21 C -0.050 4.050 22 C -0.107 4.107 23 C -0.085 4.085 24 C -0.103 4.103 25 C -0.064 4.064 26 C -0.162 4.162 27 C 0.505 3.495 28 O -0.538 6.538 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.265 0.735 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.428 0.572 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -8.052 -6.009 11.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.194 5.194 3 N -0.044 5.044 4 C -0.105 4.105 5 C 0.297 3.703 6 O -0.429 6.429 7 N -0.148 5.148 8 C -0.484 4.484 9 H 0.118 0.882 10 C -0.191 4.191 11 N -0.480 5.480 12 Si 0.806 3.194 13 H -0.186 1.186 14 H -0.215 1.215 15 H -0.198 1.198 16 C -0.013 4.013 17 C -0.153 4.153 18 C 0.343 3.657 19 O -0.425 6.425 20 O -0.325 6.325 21 C -0.054 4.054 22 C -0.127 4.127 23 C -0.104 4.104 24 C -0.122 4.122 25 C -0.083 4.083 26 C -0.168 4.168 27 C 0.300 3.700 28 O -0.416 6.416 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.289 0.711 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.194 0.806 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.918 -8.213 -5.729 11.631 hybrid contribution 0.324 0.298 0.347 0.561 sum -5.594 -7.915 -5.381 11.086 Atomic orbital electron populations 1.22278 0.72952 1.05456 1.04848 1.46385 1.10004 1.01519 1.61467 1.71098 1.11845 1.09387 1.12073 1.23320 0.87652 0.95769 1.03745 1.16998 0.86427 0.81903 0.85009 1.90447 1.14474 1.84268 1.53712 1.43343 1.04367 1.05546 1.61565 1.19587 1.08344 0.86163 1.34307 0.88221 1.26068 0.99019 1.00229 0.93771 1.69955 1.23935 1.35420 1.18731 0.85188 0.77568 0.78363 0.78303 1.18606 1.21518 1.19821 1.21840 0.81195 1.03406 0.94895 1.21564 0.87723 1.05495 1.00557 1.23110 0.90815 0.70709 0.81105 1.90696 1.71769 1.47340 1.32737 1.84528 1.28252 1.84442 1.35306 1.19483 0.95451 0.90613 0.99889 1.22085 0.92417 1.01771 0.96439 1.21869 1.02012 0.91254 0.95223 1.21731 0.93426 0.99247 0.97807 1.21202 0.94479 0.96628 0.95952 1.20127 0.92020 0.95036 1.09645 1.19217 0.88978 0.84019 0.77771 1.90780 1.68926 1.30863 1.51036 0.88274 0.88536 0.89482 0.92510 0.88474 0.91175 0.87000 0.88634 0.71056 0.83477 0.82053 0.80575 0.82899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.23 10.14 127.77 1.30 3.53 16 2 N -0.37 -12.91 3.62 -488.09 -1.77 -14.68 16 3 N -0.22 -8.38 4.93 -44.77 -0.22 -8.60 16 4 C 0.07 3.16 6.82 44.03 0.30 3.46 16 5 C 0.51 25.37 6.77 86.68 0.59 25.96 16 6 O -0.55 -30.26 11.00 -4.15 -0.05 -30.31 16 7 N -0.43 -20.62 2.57 -639.24 -1.64 -22.26 16 8 C -0.36 -18.16 9.28 84.13 0.78 -17.38 16 9 H 0.10 4.70 7.90 -2.91 -0.02 4.68 16 10 C 0.02 0.94 4.39 84.97 0.37 1.31 16 11 N -0.85 -47.73 11.16 21.69 0.24 -47.49 16 12 Si 0.98 41.93 29.59 68.60 2.03 43.96 16 13 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 14 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 C 0.11 4.38 4.25 86.38 0.37 4.75 16 17 C -0.11 -3.63 5.55 29.85 0.17 -3.46 16 18 C 0.50 13.43 7.44 71.24 0.53 13.96 16 19 O -0.54 -16.53 15.52 21.98 0.34 -16.19 16 20 O -0.51 -10.02 13.42 -51.39 -0.69 -10.71 16 21 C -0.05 -2.00 5.90 -19.95 -0.12 -2.12 16 22 C -0.11 -3.99 9.35 22.38 0.21 -3.78 16 23 C -0.09 -2.28 10.01 22.34 0.22 -2.06 16 24 C -0.10 -2.31 10.01 22.34 0.22 -2.09 16 25 C -0.06 -1.76 9.70 22.40 0.22 -1.54 16 26 C -0.16 -5.72 5.90 -20.00 -0.12 -5.84 16 27 C 0.51 18.24 7.68 86.51 0.66 18.90 16 28 O -0.54 -19.90 16.60 -4.49 -0.07 -19.97 16 29 H 0.10 2.60 5.71 -2.39 -0.01 2.58 16 30 H 0.10 2.21 8.11 -2.39 -0.02 2.19 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 33 H 0.10 3.96 5.08 -7.77 -0.04 3.92 16 34 H 0.07 2.80 7.94 -2.39 -0.02 2.78 16 35 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.10 3.14 6.98 -2.38 -0.02 3.12 16 37 H 0.43 4.12 9.10 -74.05 -0.67 3.44 16 38 H 0.15 6.47 5.24 -2.91 -0.02 6.46 16 39 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.15 3.63 7.87 -2.91 -0.02 3.61 16 Total: -1.00 -71.88 347.60 4.30 -67.59 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.42 Total: 25.06 kcal Atomic # 6 Polarization: 27.90 SS G_CDS: 5.70 Total: 33.60 kcal Atomic # 7 Polarization: -89.64 SS G_CDS: -3.39 Total: -93.03 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: -0.47 Total: -77.18 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -71.88 4.30 -67.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608140396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.757 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds