Wall clock time and date at job start Wed Apr 1 2020 02:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47573 * 2 1 4 4 C 1.50696 * 109.46930 * 239.99493 * 2 1 3 5 5 H 1.08001 * 119.99969 * 240.00369 * 4 2 1 6 6 C 1.37882 * 120.00060 * 60.00563 * 4 2 1 7 7 N 1.31517 * 119.99484 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47490 * 89.99900 * 8 6 4 10 10 H 1.48507 * 109.46922 * 209.99937 * 8 6 4 11 11 H 1.48504 * 109.47254 * 329.99564 * 8 6 4 12 12 N 1.46503 * 109.46798 * 120.00007 * 2 1 3 13 13 C 1.34772 * 119.99960 * 274.99576 * 12 2 1 14 14 O 1.21365 * 120.00340 * 0.02562 * 13 12 2 15 15 C 1.49328 * 120.00231 * 180.02562 * 13 12 2 16 16 O 1.21385 * 119.99910 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00268 * 180.27988 * 15 13 12 18 18 C 1.39805 * 120.00236 * 175.16922 * 17 15 13 19 19 C 1.38727 * 119.67836 * 214.91705 * 18 17 15 20 20 C 1.38835 * 120.21859 * 179.72723 * 19 18 17 21 21 N 1.37929 * 133.26725 * 180.23912 * 20 19 18 22 22 H 0.97000 * 125.57247 * 0.26245 * 21 20 19 23 23 C 1.36767 * 108.84669 * 180.25532 * 21 20 19 24 24 C 1.34429 * 109.62396 * 0.02562 * 23 21 20 25 25 C 1.40650 * 119.76467 * 0.51979 * 20 19 18 26 26 C 1.41179 * 119.74300 * 359.75457 * 25 20 19 27 27 C 1.47256 * 120.27306 * 180.02562 * 26 25 20 28 28 O 1.21540 * 119.99708 * 359.97438 * 27 26 25 29 29 O 1.34785 * 120.00012 * 179.97438 * 27 26 25 30 30 C 1.38938 * 119.67810 * 35.19254 * 18 17 15 31 31 H 1.08999 * 109.46975 * 300.00346 * 1 2 3 32 32 H 1.08997 * 109.46875 * 59.99932 * 1 2 3 33 33 H 1.08994 * 109.47573 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99523 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00448 * 94.99689 * 12 2 1 36 36 H 0.97003 * 119.99952 * 355.16308 * 17 15 13 37 37 H 1.07998 * 119.89036 * 0.02562 * 19 18 17 38 38 H 1.08001 * 125.18746 * 179.97438 * 23 21 20 39 39 H 1.08005 * 126.06477 * 179.97438 * 24 23 21 40 40 H 0.96707 * 116.99993 * 179.97438 * 29 27 26 41 41 H 1.08008 * 119.91331 * 359.97438 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1592 2.4118 15 6 2.6453 -0.7220 3.5763 16 8 2.9339 -1.8998 3.5219 17 7 2.7687 -0.0511 4.7387 18 6 3.1380 -0.7314 5.9028 19 6 2.6086 -0.3406 7.1241 20 6 2.9632 -1.0120 8.2864 21 7 2.6085 -0.8614 9.6108 22 1 1.9929 -0.1971 9.9581 23 6 3.2667 -1.8021 10.3541 24 6 4.0364 -2.5555 9.5498 25 6 3.8709 -2.0845 8.2239 26 6 4.4106 -2.4738 6.9788 27 6 5.3614 -3.5955 6.8998 28 8 5.6849 -4.1900 7.9093 29 8 5.8729 -3.9628 5.7081 30 6 4.0361 -1.7888 5.8261 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7089 1.1612 -3.4844 35 1 2.2489 -1.6318 1.1528 36 1 2.6013 0.9040 4.7675 37 1 1.9146 0.4856 7.1702 38 1 3.1816 -1.9208 11.4242 39 1 4.6686 -3.3747 9.8594 40 1 6.4934 -4.7045 5.7065 41 1 4.4441 -2.0805 4.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609725824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:21 Heat of formation + Delta-G solvation = -90.762130 kcal Electronic energy + Delta-G solvation = -28885.601783 eV Core-core repulsion = 24538.464551 eV Total energy + Delta-G solvation = -4347.137232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90217 -40.56764 -39.98645 -38.51724 -37.03276 -36.14160 -35.22001 -34.28384 -32.47105 -32.07952 -30.04662 -29.28393 -28.54876 -25.37623 -24.93702 -24.78922 -22.47511 -21.84530 -20.91715 -20.57841 -19.75616 -18.83213 -18.48722 -17.91923 -17.24071 -16.58022 -16.22240 -16.07006 -15.71782 -15.55405 -15.28748 -15.12025 -14.71585 -14.51767 -14.26368 -14.08181 -13.54576 -13.43152 -13.26289 -13.15024 -12.52039 -12.43441 -12.14879 -11.92611 -11.82962 -11.63537 -11.26257 -11.13506 -11.01387 -10.82203 -10.67913 -10.47521 -10.39016 -10.28966 -9.71429 -9.18946 -9.12742 -8.65368 -8.42062 -8.17230 -7.83998 -6.19589 -4.29157 0.20362 1.13965 1.77628 2.32421 2.39436 2.55893 2.85498 2.96866 3.22926 3.29861 3.32995 3.54714 3.71037 4.00571 4.31453 4.48815 4.59412 4.83056 4.85797 4.99884 5.08051 5.13696 5.14706 5.18759 5.61104 5.67482 5.92795 5.99111 6.09252 6.34707 6.41553 6.48022 6.68864 6.74762 6.81192 6.98195 7.01260 7.14577 7.17733 7.36140 7.59467 7.73620 7.81461 7.85398 8.02381 8.39392 8.57335 8.81914 9.37992 10.86453 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002308 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.444959 B =12127.990392 C =13424.938483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.065 0.935 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.666 5.666 13 C 0.496 3.504 14 O -0.535 6.535 15 C 0.508 3.492 16 O -0.500 6.500 17 N -0.650 5.650 18 C 0.150 3.850 19 C -0.112 4.112 20 C 0.093 3.907 21 N -0.588 5.588 22 H 0.420 0.580 23 C 0.053 3.947 24 C -0.193 4.193 25 C -0.059 4.059 26 C -0.080 4.080 27 C 0.532 3.468 28 O -0.514 6.514 29 O -0.507 6.507 30 C -0.068 4.068 31 H 0.016 0.984 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.266 0.734 35 H 0.403 0.597 36 H 0.424 0.576 37 H 0.134 0.866 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.413 0.587 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.543 -3.506 24.120 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.315 5.315 13 C 0.274 3.726 14 O -0.414 6.414 15 C 0.291 3.709 16 O -0.373 6.373 17 N -0.297 5.297 18 C 0.055 3.945 19 C -0.136 4.136 20 C -0.015 4.015 21 N -0.191 5.191 22 H 0.258 0.742 23 C -0.074 4.074 24 C -0.217 4.217 25 C -0.065 4.065 26 C -0.082 4.082 27 C 0.377 3.623 28 O -0.404 6.404 29 O -0.318 6.318 30 C -0.089 4.089 31 H 0.035 0.965 32 H 0.113 0.887 33 H 0.049 0.951 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.192 0.808 39 H 0.173 0.827 40 H 0.271 0.729 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.143 -3.127 24.176 24.727 hybrid contribution 0.330 -0.567 -0.617 0.900 sum 4.473 -3.694 23.559 24.263 Atomic orbital electron populations 1.22104 0.97814 0.99604 1.01227 1.18991 0.91453 0.94147 0.79308 0.92741 1.21191 1.32822 1.13491 0.89987 0.91686 1.24880 0.94692 0.94919 0.99119 1.69892 1.35712 1.22353 1.24098 0.86385 0.79294 0.79239 0.81863 1.20449 1.21034 1.19713 1.46516 1.61146 1.14596 1.09255 1.19600 0.81281 0.87265 0.84441 1.90734 1.50879 1.15186 1.84602 1.21010 0.77954 0.87101 0.84806 1.90751 1.46430 1.15551 1.84556 1.43151 1.67326 1.13153 1.06117 1.17074 0.96416 0.95742 0.85282 1.19829 1.02109 1.02507 0.89118 1.17634 1.00199 0.98617 0.85021 1.41819 1.41103 1.31275 1.04888 0.74236 1.22036 0.96339 0.91544 0.97524 1.20919 1.05601 1.04324 0.90882 1.17912 0.98727 0.96857 0.93004 1.18198 1.00376 0.97149 0.92526 1.20645 0.78729 0.82372 0.80537 1.90848 1.58984 1.54065 1.36514 1.84650 1.59664 1.53246 1.34276 1.21539 0.94287 0.93947 0.99112 0.96466 0.88698 0.95066 0.92441 0.76234 0.73729 0.84812 0.80845 0.82737 0.72881 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.42 2.56 -69.08 -0.18 6.25 16 3 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.91 8.73 -34.44 -0.30 -14.21 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.10 11.32 55.43 0.63 -23.47 16 8 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 9 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 12 N -0.67 -13.83 5.06 -55.40 -0.28 -14.11 16 13 C 0.50 9.51 7.85 -11.64 -0.09 9.41 16 14 O -0.54 -11.28 16.14 5.48 0.09 -11.19 16 15 C 0.51 8.20 7.72 -11.64 -0.09 8.11 16 16 O -0.50 -8.71 13.88 5.47 0.08 -8.63 16 17 N -0.65 -8.36 5.31 -10.33 -0.05 -8.42 16 18 C 0.15 1.85 6.28 -83.78 -0.53 1.32 16 19 C -0.11 -1.11 9.96 -39.18 -0.39 -1.50 16 20 C 0.09 0.94 7.25 -83.99 -0.61 0.33 16 21 N -0.59 -4.04 6.15 -10.64 -0.07 -4.11 16 22 H 0.42 1.49 8.96 -40.82 -0.37 1.12 16 23 C 0.05 0.37 11.84 -16.70 -0.20 0.17 16 24 C -0.19 -1.98 10.02 -39.62 -0.40 -2.38 16 25 C -0.06 -0.71 6.01 -106.56 -0.64 -1.35 16 26 C -0.08 -1.04 5.89 -104.75 -0.62 -1.66 16 27 C 0.53 6.79 8.26 34.40 0.28 7.08 16 28 O -0.51 -7.24 15.74 -19.30 -0.30 -7.54 16 29 O -0.51 -5.36 12.67 -40.72 -0.52 -5.87 16 30 C -0.07 -0.92 8.24 -38.96 -0.32 -1.24 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 33 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.40 7.80 8.01 -40.82 -0.33 7.47 16 36 H 0.42 4.69 8.29 -40.82 -0.34 4.36 16 37 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.17 0.54 8.06 -52.49 -0.42 0.11 16 39 H 0.16 1.63 6.99 -52.48 -0.37 1.27 16 40 H 0.41 2.31 9.11 45.56 0.42 2.73 16 41 H 0.16 2.34 5.73 -52.48 -0.30 2.04 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -33.28 361.48 -7.05 -40.33 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -3.22 Total: 13.46 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -3.82 Total: 8.80 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.23 Total: -50.11 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -0.66 Total: -33.23 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.28 -7.05 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609725824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.429 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds