Wall clock time and date at job start Wed Apr 1 2020 02:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47573 * 2 1 4 4 C 1.50696 * 109.46930 * 239.99493 * 2 1 3 5 5 H 1.08001 * 119.99969 * 240.00369 * 4 2 1 6 6 C 1.37882 * 120.00060 * 60.00563 * 4 2 1 7 7 N 1.31517 * 119.99484 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00018 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47490 * 89.99900 * 8 6 4 10 10 H 1.48507 * 109.46922 * 209.99937 * 8 6 4 11 11 H 1.48504 * 109.47254 * 329.99564 * 8 6 4 12 12 N 1.46503 * 109.46798 * 120.00007 * 2 1 3 13 13 C 1.34772 * 119.99960 * 274.99576 * 12 2 1 14 14 O 1.21365 * 120.00340 * 0.02562 * 13 12 2 15 15 C 1.49328 * 120.00231 * 180.02562 * 13 12 2 16 16 O 1.21385 * 119.99910 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00268 * 180.27988 * 15 13 12 18 18 C 1.39805 * 120.00236 * 175.16922 * 17 15 13 19 19 C 1.38727 * 119.67836 * 214.91705 * 18 17 15 20 20 C 1.38835 * 120.21859 * 179.72723 * 19 18 17 21 21 N 1.37929 * 133.26725 * 180.23912 * 20 19 18 22 22 H 0.97000 * 125.57247 * 0.26245 * 21 20 19 23 23 C 1.36767 * 108.84669 * 180.25532 * 21 20 19 24 24 C 1.34429 * 109.62396 * 0.02562 * 23 21 20 25 25 C 1.40650 * 119.76467 * 0.51979 * 20 19 18 26 26 C 1.41179 * 119.74300 * 359.75457 * 25 20 19 27 27 C 1.47256 * 120.27306 * 180.02562 * 26 25 20 28 28 O 1.21540 * 119.99708 * 359.97438 * 27 26 25 29 29 O 1.34785 * 120.00012 * 179.97438 * 27 26 25 30 30 C 1.38938 * 119.67810 * 35.19254 * 18 17 15 31 31 H 1.08999 * 109.46975 * 300.00346 * 1 2 3 32 32 H 1.08997 * 109.46875 * 59.99932 * 1 2 3 33 33 H 1.08994 * 109.47573 * 179.97438 * 1 2 3 34 34 H 0.96999 * 119.99523 * 179.97438 * 7 6 4 35 35 H 0.97000 * 120.00448 * 94.99689 * 12 2 1 36 36 H 0.97003 * 119.99952 * 355.16308 * 17 15 13 37 37 H 1.07998 * 119.89036 * 0.02562 * 19 18 17 38 38 H 1.08001 * 125.18746 * 179.97438 * 23 21 20 39 39 H 1.08005 * 126.06477 * 179.97438 * 24 23 21 40 40 H 0.96707 * 116.99993 * 179.97438 * 29 27 26 41 41 H 1.08008 * 119.91331 * 359.97438 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.3448 -2.1617 -4.4122 10 1 2.4873 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1592 2.4118 15 6 2.6453 -0.7220 3.5763 16 8 2.9339 -1.8998 3.5219 17 7 2.7687 -0.0511 4.7387 18 6 3.1380 -0.7314 5.9028 19 6 2.6086 -0.3406 7.1241 20 6 2.9632 -1.0120 8.2864 21 7 2.6085 -0.8614 9.6108 22 1 1.9929 -0.1971 9.9581 23 6 3.2667 -1.8021 10.3541 24 6 4.0364 -2.5555 9.5498 25 6 3.8709 -2.0845 8.2239 26 6 4.4106 -2.4738 6.9788 27 6 5.3614 -3.5955 6.8998 28 8 5.6849 -4.1900 7.9093 29 8 5.8729 -3.9628 5.7081 30 6 4.0361 -1.7888 5.8261 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 0.7089 1.1612 -3.4844 35 1 2.2489 -1.6318 1.1528 36 1 2.6013 0.9040 4.7675 37 1 1.9146 0.4856 7.1702 38 1 3.1816 -1.9208 11.4242 39 1 4.6686 -3.3747 9.8594 40 1 6.4934 -4.7045 5.7065 41 1 4.4441 -2.0805 4.8696 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609725824.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:20 Heat of formation + Delta-G solvation = -116.317063 kcal Electronic energy + Delta-G solvation = -28886.709928 eV Core-core repulsion = 24538.464551 eV Total energy + Delta-G solvation = -4348.245377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.71329 -41.82882 -40.89958 -39.96806 -38.10075 -37.06145 -36.94827 -35.41935 -34.31872 -32.92539 -31.11545 -30.81830 -29.50597 -27.36542 -26.16686 -25.81395 -23.51705 -23.00984 -21.98692 -21.57581 -21.25666 -20.24719 -19.35245 -18.87874 -18.30206 -18.04730 -17.52119 -17.30805 -16.93795 -16.72471 -16.64505 -16.46780 -15.93688 -15.54276 -15.35165 -15.02591 -14.87643 -14.77875 -14.42576 -14.21298 -14.00409 -13.74232 -13.35089 -13.08906 -13.05937 -12.88251 -12.76549 -12.74375 -12.57621 -12.50420 -12.29277 -12.12824 -11.64364 -11.41264 -11.14287 -10.68930 -10.59937 -10.55073 -9.96741 -9.25564 -8.63853 -8.19447 -6.36233 -0.65705 0.07831 0.57159 1.24172 1.45176 1.46512 1.47559 1.57916 1.76696 2.04850 2.15148 2.23277 2.40492 2.73167 2.77740 3.11565 3.47530 3.73480 3.93800 4.00657 4.04150 4.23114 4.38415 4.52221 4.71533 4.78934 4.83228 4.90130 5.02662 5.03515 5.06592 5.27545 5.32045 5.43755 5.51427 5.60259 5.61624 5.67852 5.77544 5.94129 5.99017 6.05027 6.53514 6.65807 6.66591 6.78726 6.99466 7.08038 7.35933 8.86614 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002308 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.444959 B =12127.990392 C =13424.938483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.269 3.731 3 H 0.017 0.983 4 C -0.552 4.552 5 H 0.070 0.930 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.267 1.267 12 N -0.671 5.671 13 C 0.498 3.502 14 O -0.555 6.555 15 C 0.518 3.482 16 O -0.516 6.516 17 N -0.629 5.629 18 C 0.121 3.879 19 C -0.083 4.083 20 C 0.081 3.919 21 N -0.569 5.569 22 H 0.440 0.560 23 C 0.097 3.903 24 C -0.237 4.237 25 C -0.072 4.072 26 C -0.107 4.107 27 C 0.532 3.468 28 O -0.535 6.535 29 O -0.509 6.509 30 C -0.075 4.075 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.410 0.590 36 H 0.433 0.567 37 H 0.168 0.832 38 H 0.222 0.778 39 H 0.144 0.856 40 H 0.431 0.569 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -3.506 26.507 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.035 0.965 4 C -0.590 4.590 5 H 0.088 0.912 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.320 5.320 13 C 0.278 3.722 14 O -0.435 6.435 15 C 0.300 3.700 16 O -0.390 6.390 17 N -0.277 5.277 18 C 0.026 3.974 19 C -0.106 4.106 20 C -0.027 4.027 21 N -0.173 5.173 22 H 0.282 0.718 23 C -0.032 4.032 24 C -0.262 4.262 25 C -0.078 4.078 26 C -0.109 4.109 27 C 0.378 3.622 28 O -0.427 6.427 29 O -0.323 6.323 30 C -0.096 4.096 31 H 0.041 0.959 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.246 0.754 36 H 0.274 0.726 37 H 0.185 0.815 38 H 0.239 0.761 39 H 0.162 0.838 40 H 0.293 0.707 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.646 -3.109 26.609 27.037 hybrid contribution 0.495 -0.532 -1.126 1.340 sum 4.140 -3.642 25.483 26.073 Atomic orbital electron populations 1.21931 0.97441 0.99792 1.00387 1.18617 0.91696 0.92422 0.80639 0.96531 1.21494 1.32995 1.13736 0.90762 0.91193 1.25709 0.94788 0.95547 1.02024 1.70015 1.36612 1.23572 1.24799 0.85363 0.78903 0.78112 0.78093 1.19731 1.20915 1.19175 1.46269 1.61832 1.14868 1.09026 1.20051 0.80263 0.86974 0.84947 1.90715 1.51462 1.16169 1.85134 1.20228 0.78432 0.86643 0.84699 1.90760 1.47568 1.16006 1.84700 1.42880 1.66046 1.13396 1.05368 1.17093 0.98060 0.96606 0.85619 1.20047 1.00622 1.02019 0.87883 1.17689 1.00277 0.98335 0.86441 1.41883 1.40617 1.31279 1.03528 0.71787 1.22696 0.92754 0.88742 0.99052 1.20992 1.08158 1.06088 0.90923 1.18283 0.98766 0.97433 0.93330 1.18310 1.01575 0.97895 0.93148 1.20746 0.78601 0.82264 0.80608 1.90823 1.59914 1.54864 1.37128 1.84623 1.60068 1.54184 1.33439 1.21373 0.95008 0.94746 0.98468 0.95916 0.90820 0.94225 0.92333 0.75396 0.72636 0.81503 0.76141 0.83832 0.70721 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.64 9.26 71.98 0.67 -5.97 16 2 C 0.27 13.50 2.56 44.24 0.11 13.61 16 3 H 0.02 0.96 7.58 -2.39 -0.02 0.95 16 4 C -0.55 -28.90 8.73 25.60 0.22 -28.67 16 5 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -50.55 11.32 21.45 0.24 -50.31 16 8 Si 0.97 41.62 29.54 68.60 2.03 43.64 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 12 N -0.67 -28.31 5.06 -447.56 -2.27 -30.57 16 13 C 0.50 19.29 7.85 87.23 0.68 19.98 16 14 O -0.56 -23.65 16.14 -3.29 -0.05 -23.71 16 15 C 0.52 16.73 7.72 87.23 0.67 17.40 16 16 O -0.52 -18.19 13.88 -3.36 -0.05 -18.24 16 17 N -0.63 -15.70 5.31 -304.93 -1.62 -17.32 16 18 C 0.12 2.85 6.28 38.15 0.24 3.09 16 19 C -0.08 -1.43 9.96 22.53 0.22 -1.21 16 20 C 0.08 1.42 7.25 38.92 0.28 1.70 16 21 N -0.57 -5.35 6.15 -187.58 -1.15 -6.50 16 22 H 0.44 0.80 8.96 -92.71 -0.83 -0.03 16 23 C 0.10 0.94 11.84 83.05 0.98 1.93 16 24 C -0.24 -4.50 10.02 22.25 0.22 -4.28 16 25 C -0.07 -1.67 6.01 -21.12 -0.13 -1.79 16 26 C -0.11 -2.84 5.89 -19.95 -0.12 -2.96 16 27 C 0.53 14.11 8.26 70.19 0.58 14.69 16 28 O -0.54 -15.58 15.74 19.71 0.31 -15.27 16 29 O -0.51 -11.22 12.67 -56.97 -0.72 -11.94 16 30 C -0.08 -2.05 8.24 22.67 0.19 -1.87 16 31 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 35 H 0.41 16.08 8.01 -92.71 -0.74 15.34 16 36 H 0.43 9.04 8.29 -92.71 -0.77 8.27 16 37 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 38 H 0.22 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.14 3.01 6.99 -2.91 -0.02 2.99 16 40 H 0.43 5.04 9.11 -74.05 -0.67 4.37 16 41 H 0.14 4.30 5.73 -2.91 -0.02 4.29 16 Total: -1.00 -74.33 361.48 0.16 -74.17 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: -1.84 Total: 28.87 kcal Atomic # 6 Polarization: 21.87 SS G_CDS: 5.28 Total: 27.16 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -4.80 Total: -104.69 kcal Atomic # 8 Polarization: -68.64 SS G_CDS: -0.51 Total: -69.16 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -74.33 0.16 -74.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609725824.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.143 kcal (2) G-P(sol) polarization free energy of solvation -74.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds