Wall clock time and date at job start Wed Apr 1 2020 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99902 * 2 1 4 4 O 1.20828 * 119.99986 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99935 * 179.97438 * 3 2 1 6 6 C 1.52994 * 109.47306 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47402 * 179.97438 * 6 5 3 8 8 C 1.36791 * 120.00223 * 265.76934 * 7 6 5 9 9 H 1.08003 * 120.00086 * 137.05055 * 8 7 6 10 10 C 1.39099 * 120.00531 * 317.05231 * 8 7 6 11 11 N 1.31333 * 119.99391 * 343.62438 * 10 8 7 12 12 Si 1.86793 * 120.00523 * 163.62286 * 10 8 7 13 13 H 1.48501 * 109.47130 * 59.99866 * 12 10 8 14 14 H 1.48496 * 109.47321 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.47199 * 300.00155 * 12 10 8 16 16 C 1.34780 * 119.99527 * 85.77197 * 7 6 5 17 17 O 1.21573 * 120.00468 * 4.81343 * 16 7 6 18 18 C 1.47840 * 119.99464 * 184.81569 * 16 7 6 19 19 C 1.40496 * 119.72128 * 141.79664 * 18 16 7 20 20 C 1.36036 * 120.77217 * 180.02562 * 19 18 16 21 21 C 1.40118 * 119.87058 * 359.97438 * 20 19 18 22 22 C 1.41554 * 121.87827 * 179.97438 * 21 20 19 23 23 O 1.35279 * 120.86759 * 0.02562 * 22 21 20 24 24 N 1.32347 * 118.25654 * 180.29743 * 22 21 20 25 25 C 1.32431 * 121.53591 * 359.44033 * 24 22 21 26 26 N 1.31112 * 122.92402 * 0.58072 * 25 24 22 27 27 C 1.34136 * 120.44510 * 359.71501 * 26 25 24 28 28 C 1.38654 * 119.72853 * 321.81533 * 18 16 7 29 29 H 1.09003 * 109.47203 * 299.99784 * 1 2 3 30 30 H 1.08998 * 109.47006 * 60.00300 * 1 2 3 31 31 H 1.08997 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46697 * 60.00171 * 5 3 2 33 33 H 1.09004 * 109.47172 * 300.00255 * 5 3 2 34 34 H 1.09009 * 109.47117 * 59.99839 * 6 5 3 35 35 H 1.09004 * 109.47256 * 300.00256 * 6 5 3 36 36 H 0.97003 * 119.99961 * 179.97438 * 11 10 8 37 37 H 1.07995 * 119.61822 * 0.03390 * 19 18 16 38 38 H 1.07998 * 120.06557 * 179.97438 * 20 19 18 39 39 H 0.96703 * 113.99738 * 90.00938 * 23 22 21 40 40 H 1.07998 * 118.53281 * 180.27493 * 25 24 22 41 41 H 1.08004 * 120.31802 * 359.97438 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 7 5.4631 2.8187 0.0010 8 6 6.1406 2.9427 1.1829 9 1 7.0350 2.3626 1.3561 10 6 5.6777 3.8159 2.1617 11 7 4.8026 4.7450 1.8521 12 14 6.3006 3.6672 3.9164 13 1 7.7736 3.8543 3.9363 14 1 5.6576 4.7066 4.7597 15 1 5.9654 2.3218 4.4483 16 6 6.1415 2.7671 -1.1625 17 8 5.5380 2.7453 -2.2176 18 6 7.6196 2.7371 -1.1555 19 6 8.3044 1.9378 -2.0861 20 6 9.6640 1.8938 -2.0985 21 6 10.3952 2.6527 -1.1750 22 6 11.8105 2.6383 -1.1496 23 8 12.5128 1.8838 -2.0256 24 7 12.4283 3.3782 -0.2428 25 6 11.7540 4.1260 0.6174 26 7 10.4442 4.1794 0.6414 27 6 9.7188 3.4640 -0.2310 28 6 8.3184 3.4977 -0.2305 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6100 3.2367 0.8894 35 1 3.6108 3.2356 -0.8907 36 1 4.4795 5.3537 2.5347 37 1 7.7450 1.3516 -2.8001 38 1 10.1788 1.2751 -2.8186 39 1 12.7342 2.3404 -2.8488 40 1 12.3077 4.7144 1.3341 41 1 7.7881 4.1109 0.4831 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001642950923.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:43 Heat of formation + Delta-G solvation = -101.284340 kcal Electronic energy + Delta-G solvation = -29751.016902 eV Core-core repulsion = 25403.423393 eV Total energy + Delta-G solvation = -4347.593509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.120 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.46142 -41.59068 -40.76509 -38.80827 -38.23207 -37.62806 -36.94900 -34.22237 -33.97917 -33.16452 -31.80424 -31.12098 -28.73785 -27.18899 -26.53433 -25.64981 -24.60658 -23.32641 -22.04809 -21.39999 -20.40725 -19.83572 -18.92823 -18.86978 -18.14574 -17.83520 -17.67211 -17.53584 -17.15515 -16.56057 -16.34066 -16.20407 -15.52583 -15.33538 -15.25695 -14.96900 -14.86738 -14.65711 -14.25002 -13.97151 -13.79390 -13.68116 -13.47700 -13.19242 -13.11244 -12.97691 -12.82036 -12.71618 -12.57988 -12.17400 -12.00385 -11.83915 -11.80596 -11.62544 -11.57608 -11.12652 -10.68417 -10.31177 -10.22073 -9.59248 -9.31695 -8.38044 -6.19182 -0.90825 -0.48682 0.72679 1.11870 1.40256 1.45593 1.53232 1.55930 1.69043 2.18831 2.27369 2.32992 2.76778 2.91426 3.01746 3.19321 3.27326 3.56467 3.79045 3.86264 4.01147 4.12789 4.19760 4.25254 4.30926 4.31660 4.34754 4.50250 4.56378 4.68810 4.73943 4.91257 4.93480 5.10747 5.23243 5.24308 5.33757 5.42921 5.46786 5.58645 5.87581 5.95128 6.29217 6.51803 6.68531 7.00580 7.05428 7.37274 7.81565 8.64700 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.003427 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.867345 B = 8167.586685 C = 9728.417679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.116 4.116 6 C 0.137 3.863 7 N -0.430 5.430 8 C -0.356 4.356 9 H 0.098 0.902 10 C 0.017 3.983 11 N -0.884 5.884 12 Si 0.967 3.033 13 H -0.264 1.264 14 H -0.283 1.283 15 H -0.262 1.262 16 C 0.500 3.500 17 O -0.618 6.618 18 C -0.070 4.070 19 C -0.087 4.087 20 C -0.063 4.063 21 C -0.176 4.176 22 C 0.418 3.582 23 O -0.466 6.466 24 N -0.559 5.559 25 C 0.315 3.685 26 N -0.533 5.533 27 C 0.142 3.858 28 C -0.061 4.061 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.138 0.862 32 H 0.107 0.893 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.040 0.960 36 H 0.275 0.725 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.435 0.565 40 H 0.231 0.769 41 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -8.401 -3.869 12.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.154 4.154 6 C 0.013 3.987 7 N -0.146 5.146 8 C -0.483 4.483 9 H 0.115 0.885 10 C -0.188 4.188 11 N -0.519 5.519 12 Si 0.791 3.209 13 H -0.188 1.188 14 H -0.209 1.209 15 H -0.186 1.186 16 C 0.290 3.710 17 O -0.505 6.505 18 C -0.076 4.076 19 C -0.105 4.105 20 C -0.083 4.083 21 C -0.182 4.182 22 C 0.216 3.784 23 O -0.277 6.277 24 N -0.285 5.285 25 C 0.026 3.974 26 N -0.248 5.248 27 C 0.017 3.983 28 C -0.081 4.081 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.125 0.875 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.165 0.835 38 H 0.198 0.802 39 H 0.300 0.700 40 H 0.247 0.753 41 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.423 -7.808 -3.168 11.230 hybrid contribution -0.855 0.416 0.085 0.955 sum 6.568 -7.392 -3.083 10.358 Atomic orbital electron populations 1.23585 0.74739 1.05884 1.02460 1.86504 1.25160 1.32287 1.83829 1.23777 0.92040 0.81302 0.71076 1.90652 1.67845 1.37488 1.46707 1.21669 0.86994 1.00313 1.06441 1.20909 0.81784 0.93251 1.02723 1.43366 1.04730 1.61283 1.05240 1.19526 1.12194 1.24167 0.92439 0.88487 1.26138 0.96354 0.92901 1.03447 1.69974 1.30788 1.15429 1.35704 0.85363 0.79154 0.78512 0.77898 1.18847 1.20851 1.18627 1.18853 0.87799 0.80514 0.83861 1.90619 1.70631 1.57378 1.31910 1.20073 0.93150 0.98002 0.96375 1.21117 0.94839 0.97489 0.97102 1.21001 0.92669 0.97198 0.97431 1.19847 0.95054 1.02421 1.00874 1.19632 0.85601 0.84703 0.88472 1.84574 1.73980 1.37912 1.31267 1.67988 1.43196 1.09615 1.07717 1.25310 0.86631 0.91954 0.93507 1.68767 1.09334 1.23149 1.23571 1.18947 0.94114 0.93516 0.91694 1.21703 0.91024 0.98199 0.97146 0.92117 0.92111 0.84397 0.87468 0.86143 0.89253 0.94108 0.91548 0.83470 0.80151 0.69969 0.75331 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -10.86 10.57 -51.37 -0.54 -11.41 16 3 C 0.47 17.55 7.96 71.24 0.57 18.12 16 4 O -0.54 -23.21 15.73 21.96 0.35 -22.87 16 5 C -0.12 -4.41 6.11 29.85 0.18 -4.23 16 6 C 0.14 6.54 4.22 86.38 0.36 6.90 16 7 N -0.43 -20.80 2.48 -638.85 -1.58 -22.39 16 8 C -0.36 -17.03 6.14 84.13 0.52 -16.52 16 9 H 0.10 4.52 6.57 -2.91 -0.02 4.50 16 10 C 0.02 0.83 4.96 84.97 0.42 1.25 16 11 N -0.88 -46.56 11.61 21.69 0.25 -46.30 16 12 Si 0.97 39.03 29.58 68.60 2.03 41.06 16 13 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 14 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 15 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 16 C 0.50 23.67 7.30 86.78 0.63 24.30 16 17 O -0.62 -31.65 16.49 -3.95 -0.07 -31.71 16 18 C -0.07 -2.81 5.40 -20.09 -0.11 -2.92 16 19 C -0.09 -2.71 9.52 22.31 0.21 -2.50 16 20 C -0.06 -1.56 9.58 22.21 0.21 -1.35 16 21 C -0.18 -5.03 5.76 -21.16 -0.12 -5.15 16 22 C 0.42 10.12 7.89 85.43 0.67 10.79 16 23 O -0.47 -7.59 12.91 -85.64 -1.11 -8.69 16 24 N -0.56 -14.54 10.42 -311.98 -3.25 -17.79 16 25 C 0.31 8.43 12.22 180.90 2.21 10.65 16 26 N -0.53 -18.27 10.44 -193.94 -2.03 -20.29 16 27 C 0.14 5.07 6.61 40.09 0.26 5.33 16 28 C -0.06 -2.49 7.79 22.82 0.18 -2.32 16 29 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 30 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 31 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.12 4.22 8.14 -2.38 -0.02 4.20 16 34 H 0.09 4.66 5.76 -2.38 -0.01 4.64 16 35 H 0.04 2.13 7.45 -2.38 -0.02 2.11 16 36 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 37 H 0.15 4.19 8.02 -2.91 -0.02 4.17 16 38 H 0.18 2.83 7.70 -2.91 -0.02 2.81 16 39 H 0.44 2.13 9.06 -74.06 -0.67 1.46 16 40 H 0.23 4.23 8.06 -2.91 -0.02 4.21 16 41 H 0.15 6.84 5.89 -2.91 -0.02 6.82 16 Total: -1.00 -71.77 361.06 1.90 -69.87 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.45 Total: 26.38 kcal Atomic # 6 Polarization: 36.73 SS G_CDS: 7.40 Total: 44.14 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -6.61 Total: -106.77 kcal Atomic # 8 Polarization: -73.31 SS G_CDS: -1.37 Total: -74.68 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -71.77 1.90 -69.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642950923.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.415 kcal (2) G-P(sol) polarization free energy of solvation -71.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds