Wall clock time and date at job start Wed Apr 1 2020 03:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46505 * 119.99931 * 2 1 4 4 C 1.50697 * 109.47089 * 269.99595 * 3 2 1 5 5 C 1.32832 * 124.71604 * 90.00286 * 4 3 2 6 6 C 1.44411 * 113.06646 * 179.97438 * 5 4 3 7 7 C 1.43194 * 123.44877 * 179.97438 * 6 5 4 8 8 N 6.67503 * 84.71986 * 308.76151 * 2 1 3 9 9 C 1.35943 * 113.09873 * 359.97438 * 6 5 4 10 10 S 1.70449 * 110.83257 * 359.75049 * 9 6 5 11 11 C 1.34777 * 120.00344 * 179.97438 * 2 1 3 12 12 O 1.21593 * 120.00265 * 180.02562 * 11 2 1 13 13 N 1.34777 * 119.99726 * 359.73197 * 11 2 1 14 14 C 1.40200 * 119.99970 * 180.27511 * 13 11 2 15 15 C 1.40393 * 125.97039 * 359.70966 * 14 13 11 16 16 C 1.35250 * 107.86428 * 179.88933 * 15 14 13 17 17 N 1.34963 * 107.85846 * 0.37373 * 16 15 14 18 18 C 1.46497 * 125.97640 * 179.73173 * 17 16 15 19 19 C 1.50698 * 109.47418 * 125.01465 * 18 17 16 20 20 H 1.08001 * 119.99925 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99824 * 179.97438 * 19 18 17 22 22 N 1.31512 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99883 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47074 * 59.99873 * 23 21 19 25 25 H 1.48502 * 109.47194 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46944 * 300.00103 * 23 21 19 27 27 N 1.31201 * 125.97074 * 180.02562 * 14 13 11 28 28 H 1.08997 * 109.47506 * 270.00051 * 1 2 3 29 29 H 1.09003 * 109.47023 * 30.00279 * 1 2 3 30 30 H 1.09002 * 109.46896 * 149.99872 * 1 2 3 31 31 H 1.09004 * 109.46976 * 30.00047 * 3 2 1 32 32 H 1.09006 * 109.47198 * 149.99692 * 3 2 1 33 33 H 1.07994 * 123.46516 * 0.02562 * 5 4 3 34 34 H 1.08002 * 124.58721 * 179.97438 * 9 6 5 35 35 H 0.97000 * 119.99736 * 0.26820 * 13 11 2 36 36 H 1.08000 * 126.07146 * 0.02562 * 15 14 13 37 37 H 1.08004 * 126.06886 * 180.11665 * 16 15 14 38 38 H 1.09003 * 109.46999 * 245.01790 * 18 17 16 39 39 H 1.09004 * 109.46992 * 5.01032 * 18 17 16 40 40 H 0.97001 * 119.99988 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6293 2.4681 -2.1341 6 6 2.1179 2.7310 -3.4673 7 6 1.4114 3.5288 -4.4238 8 7 0.8507 4.1614 -5.1828 9 6 3.3172 2.1435 -3.7213 10 16 3.8687 1.2782 -2.3603 11 6 2.1389 -1.1672 0.0005 12 8 3.3548 -1.1671 0.0010 13 7 1.4651 -2.3344 0.0065 14 6 2.1661 -3.5485 0.0129 15 6 3.5624 -3.6945 0.0080 16 6 3.8412 -5.0179 0.0195 17 7 2.6695 -5.6877 0.0229 18 6 2.5107 -7.1440 0.0291 19 6 1.6464 -7.5502 1.1948 20 1 1.2548 -6.7987 1.8644 21 6 1.3555 -8.8812 1.4065 22 7 1.8319 -9.7962 0.5909 23 14 0.2846 -9.3847 2.8519 24 1 -1.0481 -8.7414 2.7284 25 1 0.1236 -10.8610 2.8581 26 1 0.9276 -8.9521 4.1187 27 7 1.6319 -4.7468 0.0186 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5139 33 1 0.6943 2.8539 -1.7556 34 1 3.8504 2.2180 -4.6576 35 1 0.4951 -2.3343 0.0065 36 1 4.2856 -2.8925 -0.0009 37 1 4.8265 -5.4602 0.0212 38 1 2.0395 -7.4621 -0.9009 39 1 3.4892 -7.6158 0.1204 40 1 1.6275 -10.7327 0.7401 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650052313.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:33 Heat of formation + Delta-G solvation = 132.054416 kcal Electronic energy + Delta-G solvation = -25873.291145 eV Core-core repulsion = 22010.861586 eV Total energy + Delta-G solvation = -3862.429559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87155 -39.84324 -38.58511 -36.58395 -35.61967 -34.86102 -33.37331 -31.65287 -30.65283 -29.29375 -27.74556 -26.88885 -25.93051 -25.07937 -23.05111 -21.58684 -20.80648 -20.12918 -19.33009 -18.43056 -17.92351 -17.25367 -16.77292 -16.57191 -16.14891 -15.77769 -14.93489 -14.75425 -14.41421 -14.32083 -14.21490 -13.93373 -13.90023 -13.54751 -13.31290 -13.19468 -12.96720 -12.81718 -12.56307 -12.45577 -12.28909 -12.19104 -11.99387 -11.76380 -11.12022 -11.06925 -10.87335 -10.47226 -10.26231 -10.12683 -9.73395 -9.51705 -9.38270 -9.07704 -8.76511 -8.63289 -8.11774 -7.43184 -6.24544 -4.29676 0.31725 1.12357 1.42819 1.54453 2.34722 2.38324 2.61521 3.05129 3.12787 3.24859 3.28324 3.31931 3.40477 3.68302 3.80751 4.08190 4.30419 4.32426 4.58440 4.69683 4.73760 4.93150 5.07082 5.10492 5.22491 5.32124 5.42726 5.50814 5.54561 5.76549 5.79926 5.99421 6.26997 6.52361 6.53743 6.78616 6.93523 7.07337 7.15992 7.46241 7.67659 7.75785 7.91644 8.05815 8.47764 8.64955 8.80016 9.35847 10.84049 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.021226 B = 0.002050 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.824194 B =13655.190583 C =13944.832251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.628 5.628 3 C 0.205 3.795 4 C -0.220 4.220 5 C -0.089 4.089 6 C -0.062 4.062 7 C 0.277 3.723 8 N -0.425 5.425 9 C -0.208 4.208 10 S 0.272 5.728 11 C 0.715 3.285 12 O -0.561 6.561 13 N -0.641 5.641 14 C 0.274 3.726 15 C -0.285 4.285 16 C 0.051 3.949 17 N -0.320 5.320 18 C 0.259 3.741 19 C -0.528 4.528 20 H 0.068 0.932 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.275 1.275 27 N -0.308 5.308 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.407 0.593 36 H 0.162 0.838 37 H 0.167 0.833 38 H 0.044 0.956 39 H 0.057 0.943 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 24.550 -3.039 24.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.366 5.366 3 C 0.080 3.920 4 C -0.339 4.339 5 C -0.120 4.120 6 C -0.081 4.081 7 C -0.040 4.040 8 N -0.101 5.101 9 C -0.350 4.350 10 S 0.540 5.460 11 C 0.416 3.584 12 O -0.436 6.436 13 N -0.292 5.292 14 C 0.020 3.980 15 C -0.316 4.316 16 C -0.099 4.099 17 N -0.102 5.102 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.086 0.914 21 C -0.141 4.141 22 N -0.534 5.534 23 Si 0.735 3.265 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 N -0.139 5.139 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.169 0.831 34 H 0.191 0.809 35 H 0.243 0.757 36 H 0.179 0.821 37 H 0.184 0.816 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.498 23.633 -3.914 24.085 hybrid contribution -1.590 0.614 0.451 1.763 sum 0.908 24.247 -3.464 24.510 Atomic orbital electron populations 1.21830 0.79320 1.03495 1.02275 1.47015 1.06565 1.04216 1.78821 1.19714 0.99048 0.84124 0.89112 1.24962 1.00386 1.05812 1.02765 1.20932 1.00580 0.99520 0.90967 1.16171 0.95445 1.03997 0.92516 1.25095 0.93181 0.92865 0.92842 1.81277 1.08799 1.10412 1.09608 1.25800 0.99816 1.02814 1.06526 1.83874 1.18309 1.44458 0.99364 1.15569 0.85182 0.79739 0.77951 1.90857 1.10956 1.85397 1.56426 1.41540 1.09575 1.01907 1.76216 1.18787 0.90957 0.85056 1.03198 1.21495 0.94122 0.96033 1.19992 1.22563 0.92416 0.92467 1.02489 1.49055 1.01549 1.07663 1.51900 1.19728 0.99291 0.67619 0.99220 1.21213 1.31618 0.92691 1.11154 0.91372 1.24945 0.96054 0.96062 0.97042 1.69906 1.44769 1.01435 1.37241 0.86388 0.80776 0.77222 0.82101 1.19963 1.21068 1.20053 1.77320 1.13015 0.95161 1.28383 0.91924 0.90489 0.91146 0.88054 0.87924 0.83134 0.80880 0.75679 0.82112 0.81563 0.93772 0.92548 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.42 10.20 59.84 0.61 1.03 16 2 N -0.63 -5.39 2.86 -188.73 -0.54 -5.93 16 3 C 0.21 1.33 5.87 -5.19 -0.03 1.30 16 4 C -0.22 -1.50 6.03 -36.17 -0.22 -1.72 16 5 C -0.09 -0.55 10.20 -39.01 -0.40 -0.95 16 6 C -0.06 -0.47 5.84 -106.37 -0.62 -1.09 16 7 C 0.28 2.61 15.62 -22.47 -0.35 2.26 16 8 N -0.42 -5.00 18.54 41.84 0.78 -4.23 16 9 C -0.21 -1.39 10.78 29.91 0.32 -1.07 16 10 S 0.27 2.02 23.00 -107.50 -2.47 -0.45 16 11 C 0.71 9.35 8.25 -86.92 -0.72 8.63 16 12 O -0.56 -8.64 13.05 5.28 0.07 -8.57 16 13 N -0.64 -9.40 5.32 -15.51 -0.08 -9.48 16 14 C 0.27 5.27 8.11 -154.37 -1.25 4.02 16 15 C -0.28 -5.38 9.61 -39.84 -0.38 -5.77 16 16 C 0.05 0.98 11.44 -17.24 -0.20 0.78 16 17 N -0.32 -7.26 3.67 -62.56 -0.23 -7.49 16 18 C 0.26 6.47 6.26 -5.20 -0.03 6.44 16 19 C -0.53 -14.49 9.24 -34.44 -0.32 -14.80 16 20 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.90 -25.07 13.29 55.43 0.74 -24.33 16 23 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 N -0.31 -6.89 12.42 31.44 0.39 -6.50 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.27 8.07 -51.93 -0.42 -0.15 16 30 H 0.07 0.42 6.37 -51.93 -0.33 0.09 16 31 H 0.10 0.35 8.07 -51.93 -0.42 -0.07 16 32 H 0.10 0.77 7.42 -51.93 -0.39 0.38 16 33 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.41 4.94 6.56 -40.82 -0.27 4.67 16 36 H 0.16 2.91 5.91 -52.49 -0.31 2.60 16 37 H 0.17 2.61 8.06 -52.48 -0.42 2.19 16 38 H 0.04 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.06 1.38 8.07 -51.93 -0.42 0.96 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -33.74 372.92 -8.64 -42.38 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.21 Total: 2.24 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.68 Total: 0.65 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 1.05 Total: -57.95 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.07 Total: -8.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.47 Total: -0.45 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.74 -8.64 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650052313.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.437 kcal (2) G-P(sol) polarization free energy of solvation -33.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds