Wall clock time and date at job start Wed Apr 1 2020 03:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30042 * 126.18395 * 2 1 4 4 O 1.21287 * 110.48364 * 179.97438 * 3 2 1 5 5 C 1.34212 * 109.68918 * 0.02562 * 4 3 2 6 6 C 1.47802 * 126.67951 * 179.97438 * 5 4 3 7 7 C 1.39555 * 119.65400 * 0.02562 * 6 5 4 8 8 C 1.38231 * 119.14070 * 179.97438 * 7 6 5 9 9 C 1.39404 * 118.44979 * 0.02562 * 8 7 6 10 10 N 1.39644 * 120.38250 * 180.02562 * 9 8 7 11 11 C 1.34778 * 119.99923 * 33.45687 * 10 9 8 12 12 O 1.21582 * 119.99805 * 5.34949 * 11 10 9 13 13 N 1.34777 * 119.99850 * 185.34850 * 11 10 9 14 14 C 1.47577 * 134.49351 * 179.97438 * 13 11 10 15 15 C 1.53949 * 86.11692 * 155.35968 * 14 13 11 16 16 O 1.42902 * 113.74045 * 269.15766 * 15 14 13 17 17 C 1.50699 * 113.74243 * 137.95498 * 15 14 13 18 18 H 1.07999 * 119.99561 * 5.48516 * 17 15 14 19 19 C 1.37871 * 120.00214 * 185.49138 * 17 15 14 20 20 N 1.31517 * 119.99950 * 13.45232 * 19 17 15 21 21 Si 1.86803 * 119.99990 * 193.46127 * 19 17 15 22 22 H 1.48502 * 109.46780 * 179.97438 * 21 19 17 23 23 H 1.48501 * 109.46834 * 299.99445 * 21 19 17 24 24 H 1.48494 * 109.47096 * 59.99759 * 21 19 17 25 25 C 1.47584 * 134.48775 * 359.97438 * 13 11 10 26 26 C 1.39188 * 119.23643 * 0.26847 * 9 8 7 27 27 N 1.31491 * 120.79409 * 359.43102 * 26 9 8 28 28 N 1.32120 * 106.64444 * 0.21783 * 5 4 3 29 29 H 1.09001 * 109.46912 * 89.97923 * 1 2 3 30 30 H 1.09004 * 109.47069 * 209.97325 * 1 2 3 31 31 H 1.08998 * 109.46774 * 329.97300 * 1 2 3 32 32 H 1.08001 * 120.43303 * 359.96154 * 7 6 5 33 33 H 1.08006 * 120.77796 * 179.97438 * 8 7 6 34 34 H 0.97001 * 119.99862 * 213.46030 * 10 9 8 35 35 H 1.09002 * 113.76639 * 41.06073 * 14 13 11 36 36 H 1.08993 * 113.76998 * 269.66511 * 14 13 11 37 37 H 0.96704 * 113.99733 * 172.50104 * 16 15 14 38 38 H 0.96995 * 119.99997 * 356.09371 * 20 19 17 39 39 H 1.08998 * 113.76727 * 90.34469 * 25 13 11 40 40 H 1.08991 * 113.77358 * 318.93993 * 25 13 11 41 41 H 1.07995 * 119.60662 * 179.70525 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0496 0.0000 4 8 3.4424 0.7214 0.0005 5 6 3.5358 -0.6175 0.0003 6 6 4.7797 -1.4158 0.0003 7 6 6.0158 -0.7680 0.0009 8 6 7.1724 -1.5250 0.0014 9 6 7.0568 -2.9142 0.0006 10 7 8.1988 -3.7179 0.0016 11 6 9.3096 -3.3097 0.6466 12 8 9.2882 -2.2898 1.3082 13 7 10.4440 -4.0320 0.5582 14 6 11.8050 -3.8922 1.1116 15 6 11.9164 -5.4186 0.9452 16 8 11.5020 -6.1548 2.0977 17 6 13.2470 -5.8743 0.4040 18 1 14.0433 -5.1598 0.2565 19 6 13.4478 -7.2034 0.0973 20 7 12.4220 -8.0229 0.0210 21 14 15.1769 -7.8402 -0.2098 22 1 15.1223 -9.2920 -0.5173 23 1 15.7757 -7.1127 -1.3576 24 1 16.0071 -7.6223 1.0020 25 6 10.8241 -5.2805 -0.1308 26 6 5.7901 -3.4910 -0.0062 27 7 4.7094 -2.7421 -0.0008 28 7 2.2993 -1.0830 -0.0052 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 6.0681 0.3107 0.0009 33 1 8.1430 -1.0512 0.0015 34 1 8.1926 -4.5700 -0.4619 35 1 11.8251 -3.5608 2.1499 36 1 12.4840 -3.3296 0.4710 37 1 11.4612 -7.1111 1.9598 38 1 11.5309 -7.7058 0.2358 39 1 11.2151 -5.1258 -1.1364 40 1 10.0612 -6.0576 -0.0846 41 1 5.6937 -4.5667 -0.0117 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645973607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:34 Heat of formation + Delta-G solvation = 78.493929 kcal Electronic energy + Delta-G solvation = -28550.072254 eV Core-core repulsion = 24242.567267 eV Total energy + Delta-G solvation = -4307.504987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.127 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.78170 -41.05326 -39.86143 -38.23795 -36.35526 -35.28262 -34.52441 -33.45010 -32.53706 -32.49436 -30.51381 -29.40488 -28.33658 -25.74529 -25.51672 -24.77201 -23.92334 -23.33436 -21.82352 -20.85116 -19.47260 -18.51388 -18.41796 -18.38256 -17.98106 -17.16939 -16.82008 -16.40441 -15.55495 -15.47840 -14.78513 -14.57601 -14.40090 -14.26827 -14.19190 -13.98345 -13.93045 -13.51097 -13.27862 -13.16905 -12.86125 -12.76159 -12.56266 -12.33562 -11.88135 -11.77223 -11.29050 -11.27049 -11.18124 -11.06038 -10.71421 -10.45200 -10.30765 -10.25296 -10.04819 -9.67766 -9.47924 -8.98035 -8.66277 -8.42303 -8.04848 -6.82296 -4.61280 0.03213 0.94862 1.27254 2.03688 2.14549 2.48596 3.16402 3.23009 3.28317 3.29991 3.45101 3.57965 3.70346 3.82415 4.21251 4.24090 4.48721 4.55484 4.65141 4.71012 4.81207 5.02085 5.05620 5.13159 5.20019 5.27699 5.48281 5.51978 5.65776 5.69823 5.71448 5.89352 5.91276 5.96002 6.03289 6.20237 6.21032 6.49908 6.59781 7.10042 7.46494 7.49189 7.86691 7.96982 8.14728 8.32556 8.56848 8.67782 9.09935 10.50717 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.039006 B = 0.001807 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.660695 B =15491.559393 C =15859.530417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.168 3.832 3 N -0.386 5.386 4 O 0.084 5.916 5 C 0.243 3.757 6 C 0.144 3.856 7 C -0.098 4.098 8 C -0.086 4.086 9 C 0.166 3.834 10 N -0.680 5.680 11 C 0.721 3.279 12 O -0.585 6.585 13 N -0.646 5.646 14 C 0.145 3.855 15 C 0.217 3.783 16 O -0.566 6.566 17 C -0.619 4.619 18 H 0.067 0.933 19 C 0.035 3.965 20 N -0.894 5.894 21 Si 1.072 2.928 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.283 1.283 25 C 0.069 3.931 26 C 0.077 3.923 27 N -0.412 5.412 28 N -0.449 5.449 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.375 0.625 38 H 0.265 0.735 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.846 10.078 -3.527 18.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 N -0.094 5.094 4 O 0.025 5.975 5 C 0.024 3.976 6 C 0.006 3.994 7 C -0.120 4.120 8 C -0.114 4.114 9 C 0.064 3.936 10 N -0.326 5.326 11 C 0.425 3.575 12 O -0.464 6.464 13 N -0.382 5.382 14 C 0.023 3.977 15 C 0.176 3.824 16 O -0.373 6.373 17 C -0.656 4.656 18 H 0.085 0.915 19 C -0.171 4.171 20 N -0.531 5.531 21 Si 0.898 3.102 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.209 1.209 25 C -0.054 4.054 26 C -0.087 4.087 27 N -0.122 5.122 28 N -0.183 5.183 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.168 0.832 33 H 0.177 0.823 34 H 0.250 0.750 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.224 0.776 38 H 0.078 0.922 39 H 0.108 0.892 40 H 0.083 0.917 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -15.623 10.291 -3.188 18.977 hybrid contribution 0.052 0.711 -0.106 0.721 sum -15.571 11.002 -3.294 19.348 Atomic orbital electron populations 1.20159 0.82714 1.04781 1.04396 1.25970 1.00766 0.83461 1.00280 1.74626 0.89133 1.23708 1.21936 1.85397 1.22374 1.23689 1.65992 1.25742 0.93643 0.81485 0.96685 1.17342 0.86239 0.89062 1.06765 1.21977 0.90723 1.01933 0.97407 1.21641 1.00189 0.91953 0.97598 1.18885 0.87232 0.91392 0.96044 1.42609 1.10535 1.23626 1.55844 1.15467 0.79559 0.82512 0.79963 1.90896 1.83841 1.25750 1.45893 1.49399 1.09032 1.27138 1.52638 1.23293 0.78061 0.97471 0.98912 1.20131 0.91489 0.88262 0.82518 1.86280 1.90633 1.22961 1.37461 1.22208 0.98066 0.96842 1.48532 0.91487 1.26021 1.05529 0.93272 0.92298 1.71016 0.99830 1.39329 1.42881 0.83484 0.73390 0.76459 0.76857 1.20535 1.21079 1.20921 1.24538 0.98004 0.83042 0.99846 1.22588 0.85075 1.00346 1.00699 1.67270 1.31912 1.04369 1.08652 1.72262 0.98936 1.28146 1.18998 0.89220 0.88841 0.89453 0.83225 0.82304 0.75044 0.90704 0.89043 0.77561 0.92234 0.89212 0.91725 0.81218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.43 10.51 36.01 0.38 -0.05 16 2 C 0.17 1.92 8.20 -156.56 -1.28 0.63 16 3 N -0.39 -4.74 12.15 31.19 0.38 -4.36 16 4 O 0.08 1.02 11.11 16.62 0.18 1.20 16 5 C 0.24 3.09 8.10 -13.85 -0.11 2.98 16 6 C 0.14 1.79 6.74 -83.04 -0.56 1.23 16 7 C -0.10 -1.06 9.75 -39.09 -0.38 -1.45 16 8 C -0.09 -1.07 8.74 -39.15 -0.34 -1.41 16 9 C 0.17 2.10 6.30 -83.51 -0.53 1.57 16 10 N -0.68 -9.17 5.34 -14.09 -0.08 -9.24 16 11 C 0.72 12.68 8.51 -86.92 -0.74 11.94 16 12 O -0.59 -11.74 14.80 5.29 0.08 -11.66 16 13 N -0.65 -11.84 3.61 -184.08 -0.66 -12.50 16 14 C 0.14 2.83 8.23 -2.97 -0.02 2.80 16 15 C 0.22 4.67 1.07 -90.84 -0.10 4.57 16 16 O -0.57 -12.86 13.46 -35.23 -0.47 -13.34 16 17 C -0.62 -14.55 8.56 -34.44 -0.29 -14.85 16 18 H 0.07 1.57 7.85 -52.49 -0.41 1.15 16 19 C 0.03 0.83 5.26 -17.82 -0.09 0.74 16 20 N -0.89 -22.04 13.08 55.43 0.72 -21.31 16 21 Si 1.07 21.53 29.93 -169.99 -5.09 16.45 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 25 C 0.07 1.26 7.01 -2.97 -0.02 1.24 16 26 C 0.08 0.89 11.11 -17.34 -0.19 0.69 16 27 N -0.41 -5.39 10.27 -9.68 -0.10 -5.49 16 28 N -0.45 -6.01 11.56 -10.16 -0.12 -6.12 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.15 1.23 7.93 -52.49 -0.42 0.81 16 33 H 0.16 2.13 6.52 -52.48 -0.34 1.79 16 34 H 0.41 4.63 8.44 -40.82 -0.34 4.28 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.09 1.65 8.09 -51.93 -0.42 1.23 16 37 H 0.37 8.31 6.78 45.56 0.31 8.61 16 38 H 0.27 6.28 5.23 -40.82 -0.21 6.07 16 39 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 40 H 0.06 1.12 7.86 -51.93 -0.41 0.71 16 41 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -30.05 362.14 -7.56 -37.61 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -3.58 Total: 12.67 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: -4.29 Total: 10.64 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: 0.15 Total: -59.03 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.21 Total: -23.80 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.09 Total: 16.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.05 -7.56 -37.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645973607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.103 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds