Wall clock time and date at job start Wed Apr 1 2020 03:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46846 * 2 1 4 4 C 1.50698 * 109.47213 * 240.00197 * 2 1 3 5 5 H 1.07997 * 120.00202 * 239.99744 * 4 2 1 6 6 C 1.37882 * 120.00027 * 59.99721 * 4 2 1 7 7 N 1.31516 * 119.99664 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 119.99977 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47230 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47193 * 120.00270 * 8 6 4 11 11 H 1.48501 * 109.47323 * 239.99984 * 8 6 4 12 12 C 1.52999 * 109.47103 * 119.99843 * 2 1 3 13 13 S 1.81392 * 109.47227 * 300.00187 * 12 2 1 14 14 O 1.42103 * 110.54545 * 68.37594 * 13 12 2 15 15 O 1.42102 * 110.54885 * 291.62313 * 13 12 2 16 16 N 1.65600 * 104.44889 * 180.02562 * 13 12 2 17 17 C 1.46830 * 120.07410 * 269.98087 * 16 13 12 18 18 C 1.53805 * 109.01499 * 236.36590 * 17 16 13 19 19 N 1.46568 * 107.34365 * 314.37034 * 18 17 16 20 20 C 1.33548 * 129.52672 * 234.34772 * 19 18 17 21 21 O 1.21534 * 123.97863 * 350.23317 * 20 19 18 22 22 N 1.34131 * 112.04009 * 170.23491 * 20 19 18 23 23 C 1.34977 * 111.65700 * 3.12569 * 22 20 19 24 24 O 1.21234 * 127.16610 * 182.38324 * 23 22 20 25 25 C 1.47926 * 123.45505 * 51.45676 * 19 18 17 26 26 H 1.08999 * 111.74265 * 69.39869 * 25 19 18 27 27 C 1.47109 * 120.07884 * 90.00000 * 16 13 12 28 28 H 1.08997 * 109.47142 * 299.99611 * 1 2 3 29 29 H 1.08996 * 109.47096 * 59.99978 * 1 2 3 30 30 H 1.09000 * 109.46631 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47389 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47549 * 300.00387 * 3 2 1 33 33 H 1.09006 * 109.47007 * 60.00113 * 3 2 1 34 34 H 0.97001 * 119.99234 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46854 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.46763 * 60.00378 * 12 2 1 37 37 H 1.09000 * 109.54603 * 356.22257 * 17 16 13 38 38 H 1.08994 * 109.54564 * 116.41367 * 17 16 13 39 39 H 1.08999 * 109.88366 * 194.91039 * 18 17 16 40 40 H 1.09003 * 109.88528 * 73.82227 * 18 17 16 41 41 H 0.97008 * 124.17057 * 183.12947 * 22 20 19 42 42 H 1.09007 * 109.74769 * 2.69501 * 27 16 13 43 43 H 1.09000 * 109.75231 * 241.96461 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3225 -1.1194 -4.0079 9 1 3.1475 -2.2861 -3.6038 10 1 1.1679 -1.5864 -4.8166 11 1 3.1472 -0.1855 -4.8161 12 6 2.0400 -0.7212 1.2493 13 16 1.4354 0.1339 2.7303 14 8 0.0280 -0.0183 2.8544 15 8 2.0479 1.4101 2.8545 16 7 2.0542 -0.7400 3.9935 17 6 1.2918 -1.8620 4.5554 18 6 1.0885 -1.6255 6.0615 19 7 2.3774 -1.2000 6.6148 20 6 3.0751 -1.7098 7.6330 21 8 2.6448 -2.5508 8.3977 22 7 4.3066 -1.1843 7.7124 23 6 4.4998 -0.2252 6.7825 24 8 5.5169 0.4020 6.5777 25 6 3.1834 -0.0963 6.0489 26 1 2.7101 0.8725 6.2088 27 6 3.3688 -0.3937 4.5556 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4427 0.0005 32 1 1.6766 1.9565 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 0.7089 1.1614 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 0.3218 -1.9271 4.0624 38 1 1.8421 -2.7902 4.4017 39 1 0.7658 -2.5493 6.5416 40 1 0.3429 -0.8457 6.2171 41 1 4.9759 -1.4596 8.3584 42 1 3.7646 0.4877 4.0510 43 1 4.0555 -1.2307 4.4292 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663108048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:46 Heat of formation + Delta-G solvation = -93.330730 kcal Electronic energy + Delta-G solvation = -29886.673771 eV Core-core repulsion = 25674.869107 eV Total energy + Delta-G solvation = -4211.804663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.78532 -39.00302 -38.07370 -36.85033 -36.38224 -36.01100 -35.47574 -33.77988 -31.94118 -31.74151 -27.88164 -26.68356 -25.80952 -25.40847 -25.30200 -23.61864 -21.86345 -21.28968 -19.55420 -18.67651 -18.40463 -17.82075 -17.33479 -16.55480 -16.22505 -16.15649 -15.99419 -15.69536 -15.40301 -15.03967 -14.87654 -14.73251 -14.35761 -14.02201 -13.74506 -13.25123 -13.14667 -12.76846 -12.60910 -12.46098 -12.29366 -12.00344 -11.51966 -11.44852 -11.30674 -11.20508 -11.13708 -11.02855 -10.80507 -10.72544 -10.56815 -10.45258 -10.37485 -10.22267 -9.99534 -9.74647 -9.60002 -9.00859 -8.73526 -8.47297 -6.10563 -4.22790 0.55662 1.23885 1.85025 2.60728 2.63660 2.78493 3.20679 3.29644 3.31750 3.67009 4.01518 4.14114 4.29327 4.31746 4.45217 4.62515 4.66091 4.80041 4.94937 5.14985 5.18766 5.26450 5.34928 5.48082 5.53078 5.58449 5.66356 5.72572 6.02401 6.26287 6.28039 6.60711 6.67112 6.69856 6.79973 6.93999 6.97278 7.22470 7.41143 7.61159 7.75051 7.90086 8.01374 8.24833 8.76048 9.43291 10.90786 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.021581 B = 0.003078 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.147069 B = 9094.410784 C = 9353.640056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.283 1.283 12 C -0.577 4.577 13 S 2.586 3.414 14 O -0.955 6.955 15 O -0.956 6.956 16 N -1.008 6.008 17 C 0.097 3.903 18 C 0.138 3.862 19 N -0.614 5.614 20 C 0.707 3.293 21 O -0.546 6.546 22 N -0.683 5.683 23 C 0.534 3.466 24 O -0.459 6.459 25 C 0.072 3.928 26 H 0.143 0.857 27 C 0.125 3.875 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.432 0.568 42 H 0.122 0.878 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.169 -4.426 16.824 17.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.079 3.921 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C -0.711 4.711 13 S 2.686 3.314 14 O -0.946 6.946 15 O -0.946 6.946 16 N -0.842 5.842 17 C -0.030 4.030 18 C 0.016 3.984 19 N -0.353 5.353 20 C 0.408 3.592 21 O -0.420 6.420 22 N -0.353 5.353 23 C 0.319 3.681 24 O -0.327 6.327 25 C -0.037 4.037 26 H 0.160 0.840 27 C -0.003 4.003 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.127 0.873 40 H 0.106 0.894 41 H 0.275 0.725 42 H 0.140 0.860 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.633 -3.671 17.017 17.606 hybrid contribution 1.086 -1.137 -0.781 1.756 sum 3.719 -4.808 16.235 17.336 Atomic orbital electron populations 1.22277 0.96825 1.00645 1.02366 1.17966 0.92887 0.92261 0.89017 1.22282 0.99786 0.97724 1.02373 1.20961 1.31809 1.12148 0.89308 0.92228 1.24940 0.94838 0.94961 0.98982 1.69806 1.36255 1.22536 1.23480 0.86472 0.78668 0.79623 0.82843 1.19830 1.20918 1.20900 1.30549 1.11379 1.12799 1.16409 1.06082 0.74803 0.75128 0.75417 1.93545 1.29058 1.86382 1.85572 1.93551 1.78011 1.37491 1.85542 1.58067 1.28338 1.47242 1.50590 1.21983 0.98210 0.89341 0.93416 1.22024 0.81114 1.02311 0.92995 1.47525 1.21786 1.33993 1.32000 1.15560 0.80432 0.81267 0.81914 1.91028 1.71903 1.34405 1.44621 1.44477 1.16285 1.38746 1.35839 1.20568 0.89362 0.78388 0.79832 1.90880 1.30638 1.45443 1.65759 1.22856 0.89839 0.94581 0.96402 0.83977 1.21546 0.85247 1.03484 0.89987 0.95420 0.88584 0.94431 0.94390 0.88578 0.95405 0.92726 0.86265 0.86255 0.86527 0.90391 0.87285 0.89404 0.72516 0.85971 0.90016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.78 7.78 37.16 0.29 -3.49 16 2 C 0.08 1.84 0.52 -155.66 -0.08 1.76 16 3 C -0.16 -3.81 7.78 37.16 0.29 -3.52 16 4 C -0.50 -12.63 8.01 -34.44 -0.28 -12.90 16 5 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 6 C 0.06 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.88 -23.30 9.35 55.43 0.52 -22.78 16 8 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.58 -10.16 5.12 37.16 0.19 -9.97 16 13 S 2.59 41.49 4.46 -107.50 -0.48 41.01 16 14 O -0.96 -17.19 14.17 -57.54 -0.82 -18.00 16 15 O -0.96 -17.47 14.19 -57.54 -0.82 -18.28 16 16 N -1.01 -11.45 3.16 -112.99 -0.36 -11.80 16 17 C 0.10 0.87 6.56 -3.44 -0.02 0.85 16 18 C 0.14 1.13 7.16 -3.59 -0.03 1.10 16 19 N -0.61 -5.65 3.00 -171.54 -0.52 -6.16 16 20 C 0.71 7.17 8.73 -88.59 -0.77 6.40 16 21 O -0.55 -7.18 17.79 5.34 0.09 -7.09 16 22 N -0.68 -5.51 5.73 -16.00 -0.09 -5.60 16 23 C 0.53 4.93 8.06 -10.62 -0.09 4.84 16 24 O -0.46 -5.41 18.02 5.60 0.10 -5.31 16 25 C 0.07 0.66 4.12 -67.83 -0.28 0.38 16 26 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 27 C 0.12 1.24 5.99 -3.51 -0.02 1.22 16 28 H 0.03 0.60 5.46 -51.93 -0.28 0.31 16 29 H 0.10 2.43 6.07 -51.93 -0.32 2.12 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.03 0.60 5.46 -51.93 -0.28 0.32 16 34 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.12 1.90 8.14 -51.92 -0.42 1.48 16 36 H 0.12 1.88 8.14 -51.92 -0.42 1.45 16 37 H 0.12 1.05 6.83 -51.93 -0.35 0.69 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.76 7.98 -51.93 -0.41 0.35 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.43 2.56 8.96 -40.82 -0.37 2.19 16 42 H 0.12 1.28 6.87 -51.92 -0.36 0.92 16 43 H 0.08 0.69 8.02 -51.93 -0.42 0.27 16 LS Contribution 350.47 15.07 5.28 5.28 Total: -1.00 -32.87 350.47 -8.59 -41.46 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.61 Total: 4.04 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -0.89 Total: -11.75 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.44 Total: -46.35 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -1.44 Total: -48.69 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Atomic # 16 Polarization: 41.49 SS G_CDS: -0.48 Total: 41.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.87 -8.59 -41.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663108048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.870 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds