Wall clock time and date at job start Wed Apr 1 2020 03:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46793 * 2 1 4 4 C 1.50702 * 109.47109 * 240.00242 * 2 1 3 5 5 H 1.08000 * 119.99590 * 239.99668 * 4 2 1 6 6 C 1.37874 * 119.99902 * 59.99664 * 4 2 1 7 7 N 1.31509 * 120.00284 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99573 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47165 * 60.00438 * 8 6 4 10 10 H 1.48503 * 109.46627 * 180.02562 * 8 6 4 11 11 H 1.48491 * 109.47295 * 299.99974 * 8 6 4 12 12 C 1.52998 * 109.46863 * 120.00078 * 2 1 3 13 13 S 1.81393 * 109.47399 * 299.99997 * 12 2 1 14 14 O 1.42095 * 110.54625 * 68.37686 * 13 12 2 15 15 O 1.42104 * 110.54430 * 291.62847 * 13 12 2 16 16 N 1.65606 * 104.45083 * 180.02562 * 13 12 2 17 17 C 1.46820 * 120.07357 * 270.02012 * 16 13 12 18 18 C 1.53798 * 109.01474 * 123.63401 * 17 16 13 19 19 N 1.46564 * 107.34667 * 45.62620 * 18 17 16 20 20 C 1.33545 * 129.52585 * 125.65449 * 19 18 17 21 21 O 1.21537 * 123.97875 * 9.80206 * 20 19 18 22 22 N 1.34139 * 112.04291 * 189.76320 * 20 19 18 23 23 C 1.34974 * 111.64652 * 357.12252 * 22 20 19 24 24 O 1.21244 * 127.15501 * 177.35113 * 23 22 20 25 25 C 1.47919 * 123.45494 * 308.54896 * 19 18 17 26 26 H 1.09003 * 111.74507 * 289.60815 * 25 19 18 27 27 C 1.47112 * 120.07545 * 90.00124 * 16 13 12 28 28 H 1.08993 * 109.47364 * 299.99638 * 1 2 3 29 29 H 1.08997 * 109.47173 * 60.00388 * 1 2 3 30 30 H 1.09005 * 109.46915 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47269 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47597 * 300.00090 * 3 2 1 33 33 H 1.09006 * 109.47357 * 60.00485 * 3 2 1 34 34 H 0.97006 * 119.99951 * 179.97438 * 7 6 4 35 35 H 1.09005 * 109.46618 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47260 * 60.00474 * 12 2 1 37 37 H 1.09004 * 109.54582 * 243.49383 * 17 16 13 38 38 H 1.09002 * 109.54493 * 3.68066 * 17 16 13 39 39 H 1.09002 * 109.87905 * 286.16960 * 18 17 16 40 40 H 1.08998 * 109.88624 * 165.08958 * 18 17 16 41 41 H 0.97001 * 124.17161 * 176.84937 * 22 20 19 42 42 H 1.09003 * 109.74755 * 118.03845 * 27 16 13 43 43 H 1.09000 * 109.78881 * 357.33259 * 27 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8278 -0.4191 -5.2204 11 1 3.8074 -1.1188 -4.0078 12 6 2.0399 -0.7213 1.2492 13 16 1.4353 0.1338 2.7303 14 8 0.0280 -0.0184 2.8544 15 8 2.0479 1.4100 2.8544 16 7 2.0541 -0.7402 3.9936 17 6 1.2920 -1.8627 4.5548 18 6 2.1554 -3.1340 4.4952 19 7 3.4926 -2.7772 4.9774 20 6 4.2199 -3.3289 5.9522 21 8 3.9310 -4.3698 6.5091 22 7 5.3071 -2.5993 6.2436 23 6 5.4188 -1.5263 5.4324 24 8 6.2655 -0.6596 5.4769 25 6 4.2690 -1.6316 4.4551 26 1 4.6168 -1.8098 3.4375 27 6 3.3687 -0.3939 4.5557 28 1 -0.3634 0.5137 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8901 34 1 0.7094 1.1618 -3.4844 35 1 3.1300 -0.7208 1.2494 36 1 1.6767 -1.7489 1.2492 37 1 1.0332 -1.6458 5.5913 38 1 0.3811 -2.0112 3.9749 39 1 2.2154 -3.4934 3.4679 40 1 1.7245 -3.9051 5.1339 41 1 5.9334 -2.8141 6.9525 42 1 3.2576 -0.1031 5.6004 43 1 3.8073 0.4277 3.9895 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663108049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:50 Heat of formation + Delta-G solvation = -93.357183 kcal Electronic energy + Delta-G solvation = -30153.721549 eV Core-core repulsion = 25941.915738 eV Total energy + Delta-G solvation = -4211.805810 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.78781 -38.99843 -38.08080 -36.84677 -36.39255 -36.00774 -35.48913 -33.75797 -31.96509 -31.74859 -27.81992 -26.79313 -25.81251 -25.40506 -25.29963 -23.60432 -21.85335 -21.28228 -19.50057 -18.71458 -18.43362 -17.83342 -17.32510 -16.55156 -16.24534 -16.13496 -16.01077 -15.72289 -15.43810 -14.99758 -14.87265 -14.71364 -14.35063 -14.07686 -13.71016 -13.27336 -13.15487 -12.80071 -12.60918 -12.46521 -12.22458 -12.04409 -11.50986 -11.47036 -11.30494 -11.17749 -11.12280 -11.05352 -10.80823 -10.71886 -10.62786 -10.48792 -10.37313 -10.24084 -10.01534 -9.74964 -9.57457 -9.00037 -8.76003 -8.47132 -6.10610 -4.23256 0.55908 1.23852 1.84203 2.60877 2.64091 2.78574 3.22166 3.28424 3.29529 3.65883 3.96172 4.18056 4.26895 4.31373 4.45305 4.59693 4.62897 4.78990 4.92233 5.14716 5.17601 5.28457 5.35799 5.46941 5.50300 5.59181 5.66474 5.71388 6.01823 6.24100 6.27548 6.59636 6.67009 6.69500 6.79815 6.93877 6.97564 7.21946 7.40607 7.60294 7.75515 7.89725 8.00517 8.24211 8.74918 9.42839 10.90616 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003594 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.942688 B = 7788.691128 C = 8226.847785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.082 3.918 3 C -0.164 4.164 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.579 4.579 13 S 2.585 3.415 14 O -0.955 6.955 15 O -0.955 6.955 16 N -1.007 6.007 17 C 0.100 3.900 18 C 0.132 3.868 19 N -0.612 5.612 20 C 0.707 3.293 21 O -0.545 6.545 22 N -0.683 5.683 23 C 0.533 3.467 24 O -0.459 6.459 25 C 0.066 3.934 26 H 0.144 0.856 27 C 0.128 3.872 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.096 0.904 33 H 0.027 0.973 34 H 0.264 0.736 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.432 0.568 42 H 0.084 0.916 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -6.334 14.816 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.080 3.920 3 C -0.222 4.222 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.713 4.713 13 S 2.685 3.315 14 O -0.945 6.945 15 O -0.945 6.945 16 N -0.841 5.841 17 C -0.026 4.026 18 C 0.009 3.991 19 N -0.352 5.352 20 C 0.408 3.592 21 O -0.419 6.419 22 N -0.354 5.354 23 C 0.318 3.682 24 O -0.327 6.327 25 C -0.043 4.043 26 H 0.162 0.838 27 C 0.001 3.999 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.128 0.872 41 H 0.275 0.725 42 H 0.102 0.898 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.954 -5.556 15.024 16.499 hybrid contribution 1.142 -1.208 -0.810 1.849 sum 5.095 -6.764 14.214 16.545 Atomic orbital electron populations 1.22278 0.96841 1.00648 1.02365 1.17944 0.92867 0.92234 0.88951 1.22284 0.99781 0.97745 1.02373 1.20863 1.31977 1.12172 0.89304 0.92354 1.24925 0.94811 0.94940 0.98937 1.69781 1.36102 1.22457 1.23707 0.86599 0.79173 0.79705 0.82164 1.20264 1.21155 1.20263 1.30581 1.11262 1.12821 1.16654 1.06123 0.74859 0.75210 0.75294 1.93552 1.29017 1.86376 1.85543 1.93558 1.78006 1.37434 1.85508 1.58091 1.27920 1.47009 1.51075 1.21957 0.94463 0.84688 1.01540 1.22134 0.77898 0.97652 1.01366 1.47471 1.18808 1.32023 1.36857 1.15560 0.79874 0.83182 0.80545 1.91031 1.72877 1.21499 1.56499 1.44477 1.27849 1.26576 1.36448 1.20597 0.85644 0.80539 0.81457 1.90885 1.36952 1.34905 1.70004 1.22989 0.90944 0.90006 1.00357 0.83841 1.21518 0.81878 0.94386 1.02138 0.95444 0.88596 0.94416 0.94380 0.88585 0.95434 0.92599 0.86357 0.86266 0.90240 0.86661 0.89260 0.87210 0.72525 0.89803 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 7.77 37.16 0.29 -3.46 16 2 C 0.08 1.84 0.52 -155.66 -0.08 1.76 16 3 C -0.16 -3.78 7.77 37.16 0.29 -3.49 16 4 C -0.50 -12.40 8.01 -34.44 -0.28 -12.68 16 5 H 0.06 1.39 7.74 -52.49 -0.41 0.98 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.59 16 7 N -0.88 -23.13 9.35 55.43 0.52 -22.61 16 8 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 9 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 C -0.58 -9.81 5.12 37.16 0.19 -9.62 16 13 S 2.59 41.66 4.43 -107.50 -0.48 41.19 16 14 O -0.95 -17.54 14.25 -57.54 -0.82 -18.36 16 15 O -0.95 -17.83 14.24 -57.54 -0.82 -18.65 16 16 N -1.01 -11.45 3.16 -113.00 -0.36 -11.81 16 17 C 0.10 0.90 6.49 -3.45 -0.02 0.87 16 18 C 0.13 1.02 7.16 -3.59 -0.03 0.99 16 19 N -0.61 -5.47 3.00 -171.54 -0.52 -5.98 16 20 C 0.71 7.15 8.73 -88.58 -0.77 6.38 16 21 O -0.55 -7.21 17.79 5.33 0.09 -7.11 16 22 N -0.68 -5.53 5.73 -15.99 -0.09 -5.62 16 23 C 0.53 4.89 8.05 -10.61 -0.09 4.80 16 24 O -0.46 -5.41 18.02 5.59 0.10 -5.31 16 25 C 0.07 0.57 4.13 -67.83 -0.28 0.29 16 26 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 27 C 0.13 1.28 5.93 -3.51 -0.02 1.26 16 28 H 0.03 0.59 5.46 -51.93 -0.28 0.31 16 29 H 0.10 2.41 6.07 -51.93 -0.32 2.10 16 30 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.03 0.60 5.46 -51.93 -0.28 0.31 16 34 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.12 1.76 8.14 -51.92 -0.42 1.34 16 36 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 37 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 1.02 6.97 -51.93 -0.36 0.66 16 39 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.11 0.74 7.98 -51.93 -0.41 0.33 16 41 H 0.43 2.60 8.96 -40.82 -0.37 2.23 16 42 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 43 H 0.12 1.26 6.97 -51.93 -0.36 0.90 16 LS Contribution 350.69 15.07 5.28 5.28 Total: -1.00 -33.13 350.69 -8.61 -41.74 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -5.62 Total: 3.73 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -0.89 Total: -11.30 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.44 Total: -46.02 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: -1.44 Total: -49.43 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 41.66 SS G_CDS: -0.48 Total: 41.19 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.13 -8.61 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663108049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.616 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds