Wall clock time and date at job start Wed Apr 1 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86804 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47275 * 274.98922 * 3 2 1 5 5 H 1.48504 * 109.46786 * 34.98593 * 3 2 1 6 6 H 1.48494 * 109.46919 * 154.98397 * 3 2 1 7 7 C 1.38807 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99584 * 186.84958 * 7 2 1 9 9 N 1.36933 * 120.00291 * 6.84358 * 7 2 1 10 10 C 1.47023 * 125.64689 * 353.98394 * 9 7 2 11 11 C 1.54320 * 107.27072 * 181.02490 * 10 9 7 12 12 C 1.55157 * 102.94443 * 22.18960 * 11 10 9 13 13 H 1.09007 * 111.03234 * 82.58994 * 12 11 10 14 14 C 1.53000 * 111.00521 * 206.42331 * 12 11 10 15 15 C 1.53002 * 109.46897 * 178.65334 * 14 12 11 16 16 N 1.46499 * 109.47201 * 180.02562 * 15 14 12 17 17 C 1.34771 * 120.00387 * 179.72408 * 16 15 14 18 18 O 1.21577 * 119.99889 * 359.97438 * 17 16 15 19 19 C 1.47659 * 120.00441 * 179.97438 * 17 16 15 20 20 C 1.40160 * 119.85285 * 359.97438 * 19 17 16 21 21 C 1.36216 * 120.07849 * 179.97438 * 20 19 17 22 22 C 1.39584 * 120.43443 * 0.02729 * 21 20 19 23 23 S 1.76144 * 131.53314 * 179.97438 * 22 21 20 24 24 C 1.70634 * 90.85604 * 180.02562 * 23 22 21 25 25 N 1.27850 * 111.58535 * 0.02562 * 24 23 22 26 26 C 1.34737 * 117.84099 * 0.02562 * 25 24 23 27 27 C 1.38722 * 119.85709 * 179.72679 * 19 17 16 28 28 C 1.47423 * 125.65002 * 173.94334 * 9 7 2 29 29 H 0.96996 * 120.00692 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.88077 * 300.43803 * 10 9 7 31 31 H 1.09003 * 109.88284 * 61.45128 * 10 9 7 32 32 H 1.09011 * 110.72018 * 263.82935 * 11 10 9 33 33 H 1.08999 * 110.72205 * 140.55618 * 11 10 9 34 34 H 1.08994 * 109.47261 * 58.65444 * 14 12 11 35 35 H 1.09001 * 109.47161 * 298.64931 * 14 12 11 36 36 H 1.08999 * 109.47519 * 59.99832 * 15 14 12 37 37 H 1.09001 * 109.46886 * 299.99765 * 15 14 12 38 38 H 0.97000 * 119.99993 * 359.97438 * 16 15 14 39 39 H 1.07999 * 119.95917 * 359.97438 * 20 19 17 40 40 H 1.08002 * 119.78595 * 180.02562 * 21 20 19 41 41 H 1.08006 * 124.20465 * 180.02562 * 24 23 22 42 42 H 1.07995 * 119.97127 * 359.97438 * 27 19 17 43 43 H 1.09000 * 110.36667 * 37.06685 * 28 9 7 44 44 H 1.09002 * 110.45843 * 274.79590 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1074 -1.3947 5 1 1.5041 2.6200 0.8028 6 1 3.5963 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0844 -1.2054 0.1110 9 7 1.3330 -2.3837 -0.1424 10 6 -0.1291 -2.5345 -0.1773 11 6 -0.4310 -4.0407 -0.3247 12 6 0.8659 -4.7084 0.2039 13 1 0.8577 -4.7720 1.2921 14 6 1.0655 -6.0903 -0.4218 15 6 2.3687 -6.7016 0.0970 16 7 2.5601 -8.0246 -0.5025 17 6 3.6514 -8.7527 -0.1939 18 8 4.4772 -8.3115 0.5816 19 6 3.8441 -10.0864 -0.7977 20 6 2.8899 -10.5923 -1.6910 21 6 3.0633 -11.8218 -2.2511 22 6 4.1887 -12.5874 -1.9416 23 16 4.7001 -14.1837 -2.4828 24 6 6.1059 -14.0877 -1.5204 25 7 6.1625 -12.9829 -0.8794 26 6 5.1554 -12.1042 -1.0498 27 6 4.9713 -10.8309 -0.4824 28 6 1.9491 -3.7153 -0.2861 29 1 -0.4851 0.8400 0.0004 30 1 -0.5628 -2.1585 0.7493 31 1 -0.5380 -1.9872 -1.0267 32 1 -0.5997 -4.2997 -1.3701 33 1 -1.2875 -4.3240 0.2870 34 1 1.1158 -5.9943 -1.5063 35 1 0.2292 -6.7354 -0.1524 36 1 2.3185 -6.7976 1.1816 37 1 3.2050 -6.0566 -0.1724 38 1 1.9033 -8.3749 -1.1243 39 1 2.0161 -10.0066 -1.9356 40 1 2.3252 -12.2069 -2.9392 41 1 6.8547 -14.8637 -1.4602 42 1 5.7055 -10.4342 0.2031 43 1 2.8412 -3.7897 0.3357 44 1 2.1976 -3.9095 -1.3295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714879110.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:55 Heat of formation + Delta-G solvation = 44.247328 kcal Electronic energy + Delta-G solvation = -25926.055880 eV Core-core repulsion = 22163.359063 eV Total energy + Delta-G solvation = -3762.696817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.08508 -39.74665 -37.85966 -37.07530 -35.35091 -33.08355 -31.78606 -31.15508 -30.25317 -28.94921 -26.72881 -25.69530 -24.94660 -23.85847 -22.64604 -22.21457 -20.67510 -19.98192 -19.55004 -19.13930 -17.60192 -17.00104 -16.75167 -16.67140 -15.80099 -15.62371 -15.30811 -14.90805 -14.71166 -14.51096 -14.44309 -14.09585 -13.79222 -13.66067 -13.49554 -12.65500 -12.48374 -12.39414 -12.19819 -11.95698 -11.81647 -11.57840 -11.54991 -11.12213 -10.85647 -10.75204 -10.64853 -10.30024 -10.20539 -10.11622 -9.96575 -9.84375 -9.77866 -9.58655 -9.37867 -9.17106 -8.67596 -8.54540 -6.78002 -5.68985 -3.00899 -0.16535 0.26553 0.67742 1.14221 1.71471 2.54053 2.83810 3.36034 3.42779 3.48167 3.50018 3.51204 4.01612 4.32487 4.38647 4.53508 4.59231 4.65834 4.84056 4.94992 5.08743 5.25927 5.32351 5.48869 5.51396 5.52661 5.60226 5.66689 5.67824 5.75348 5.87503 5.97877 6.02277 6.09915 6.20204 6.32060 6.39880 6.56463 6.60941 6.75437 6.99121 7.01384 7.27332 7.60204 7.67181 7.86263 7.97844 8.30318 9.26113 9.86862 10.53666 11.43280 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.028781 B = 0.001613 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.645543 B =17349.718268 C =17913.553104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.607 5.607 10 C 0.176 3.824 11 C -0.138 4.138 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.116 4.116 15 C 0.117 3.883 16 N -0.721 5.721 17 C 0.557 3.443 18 O -0.530 6.530 19 C -0.119 4.119 20 C -0.071 4.071 21 C -0.076 4.076 22 C -0.164 4.164 23 S 0.105 5.895 24 C 0.066 3.934 25 N -0.457 5.457 26 C 0.069 3.931 27 C 0.004 3.996 28 C 0.139 3.861 29 H 0.251 0.749 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.399 0.601 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.207 0.793 42 H 0.152 0.848 43 H 0.037 0.963 44 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.078 -32.234 -6.573 33.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.176 4.176 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.154 4.154 15 C -0.006 4.006 16 N -0.373 5.373 17 C 0.343 3.657 18 O -0.407 6.407 19 C -0.125 4.125 20 C -0.093 4.093 21 C -0.098 4.098 22 C -0.284 4.284 23 S 0.359 5.641 24 C -0.239 4.239 25 N -0.169 5.169 26 C -0.051 4.051 27 C -0.017 4.017 28 C 0.013 3.987 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.234 0.766 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.223 0.777 42 H 0.169 0.831 43 H 0.055 0.945 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 4.768 -32.368 -6.276 33.314 hybrid contribution 0.097 1.426 0.041 1.430 sum 4.865 -30.942 -6.235 31.937 Atomic orbital electron populations 1.69979 1.04905 1.24950 1.57042 1.24817 0.95706 0.97654 1.02322 0.86126 0.78731 0.83661 0.77466 1.21672 1.21799 1.20614 1.19085 0.91132 0.82645 1.42730 0.90454 1.44482 1.01692 1.01191 1.85922 1.21148 0.84472 0.88493 1.00802 1.22894 0.95930 0.99258 0.99534 1.22275 0.97693 0.92232 0.99872 0.90561 1.21749 0.95701 0.96976 1.01023 1.21572 0.99002 0.81774 0.98265 1.45971 1.23908 1.19449 1.47942 1.18007 0.81847 0.84293 0.81587 1.90831 1.43170 1.71529 1.35149 1.19774 0.96399 0.95723 1.00646 1.21000 0.98355 0.95139 0.94833 1.19989 0.95512 0.93757 1.00560 1.24123 1.01478 0.99305 1.03469 1.84095 1.19649 1.13071 1.47295 1.28165 1.01126 0.98272 0.96362 1.66215 1.25418 1.02252 1.23001 1.19107 0.90644 0.96159 0.99152 1.20790 0.96052 0.89208 0.95694 1.21607 0.94231 0.85896 0.96942 0.93834 0.94084 0.93775 0.92550 0.92347 0.91231 0.91597 0.91092 0.90557 0.76614 0.84133 0.84355 0.77669 0.83054 0.94473 0.96473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.41 10.36 55.49 0.57 -26.83 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.47 29.56 -169.99 -5.02 17.45 16 4 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.23 -6.47 10.26 -15.06 -0.15 -6.63 16 8 H 0.08 2.14 7.84 -52.49 -0.41 1.73 16 9 N -0.61 -15.68 3.39 -170.08 -0.58 -16.26 16 10 C 0.18 4.26 5.38 -3.07 -0.02 4.25 16 11 C -0.14 -2.46 6.42 -24.90 -0.16 -2.62 16 12 C -0.10 -1.64 3.07 -88.47 -0.27 -1.91 16 13 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 14 C -0.12 -1.36 4.84 -26.73 -0.13 -1.49 16 15 C 0.12 1.41 5.52 -4.04 -0.02 1.39 16 16 N -0.72 -7.19 5.50 -61.31 -0.34 -7.53 16 17 C 0.56 6.72 7.76 -12.42 -0.10 6.62 16 18 O -0.53 -8.58 16.30 5.30 0.09 -8.49 16 19 C -0.12 -1.16 5.86 -105.15 -0.62 -1.78 16 20 C -0.07 -0.48 9.47 -39.59 -0.37 -0.85 16 21 C -0.08 -0.49 9.99 -39.81 -0.40 -0.89 16 22 C -0.16 -1.34 6.56 -38.37 -0.25 -1.59 16 23 S 0.10 0.59 23.17 -107.50 -2.49 -1.90 16 24 C 0.07 0.41 12.10 51.10 0.62 1.03 16 25 N -0.46 -4.50 10.57 -13.02 -0.14 -4.64 16 26 C 0.07 0.70 6.98 -84.99 -0.59 0.11 16 27 C 0.00 0.04 9.65 -38.51 -0.37 -0.33 16 28 C 0.14 2.85 5.89 -2.53 -0.01 2.84 16 29 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.04 1.10 7.54 -51.93 -0.39 0.71 16 31 H 0.04 1.19 7.36 -51.93 -0.38 0.81 16 32 H 0.06 0.93 8.04 -51.92 -0.42 0.51 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.08 1.07 7.46 -51.93 -0.39 0.68 16 38 H 0.40 2.64 6.47 -40.82 -0.26 2.38 16 39 H 0.14 0.52 6.37 -52.49 -0.33 0.19 16 40 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.21 0.48 8.06 -52.48 -0.42 0.05 16 42 H 0.15 1.73 7.60 -52.49 -0.40 1.33 16 43 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16 44 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -35.44 375.28 -11.11 -46.55 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -5.91 Total: -1.80 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: -2.95 Total: -2.19 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.48 Total: -55.26 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.09 Total: -8.49 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -2.49 Total: -1.90 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.44 -11.11 -46.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714879110.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.797 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds