Wall clock time and date at job start Wed Apr 1 2020 03:42:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.50699 * 110.53336 * 2 1
4 4 C 1.38247 * 119.97464 * 266.89720 * 3 2 1
5 5 C 1.38194 * 120.02611 * 180.27505 * 4 3 2
6 6 C 1.38457 * 119.97439 * 359.97438 * 5 4 3
7 7 F 1.35101 * 120.02589 * 180.02562 * 6 5 4
8 8 C 1.38454 * 119.94860 * 0.02562 * 6 5 4
9 9 C 1.38192 * 119.97673 * 359.97438 * 8 6 5
10 10 N 1.47309 * 110.73214 * 122.91929 * 2 1 3
11 11 C 1.34528 * 106.61770 * 118.58683 * 10 2 1
12 12 O 1.21536 * 123.77140 * 179.97438 * 11 10 2
13 13 N 1.33792 * 112.45947 * 0.02562 * 11 10 2
14 14 C 1.46501 * 124.17884 * 179.97438 * 13 11 10
15 15 C 1.52997 * 109.46831 * 270.03506 * 14 13 11
16 16 H 1.08996 * 109.47216 * 55.00225 * 15 14 13
17 17 C 1.47199 * 109.47167 * 294.99674 * 15 14 13
18 18 N 4.63139 * 135.41184 * 266.86477 * 2 1 3
19 19 C 1.53004 * 109.46905 * 175.00099 * 15 14 13
20 20 C 1.50696 * 109.47250 * 185.00002 * 19 15 14
21 21 H 1.08003 * 119.99917 * 0.02562 * 20 19 15
22 22 C 1.37875 * 120.00381 * 180.02562 * 20 19 15
23 23 N 1.31517 * 119.99688 * 359.97438 * 22 20 19
24 24 Si 1.86800 * 120.00511 * 179.97438 * 22 20 19
25 25 H 1.48506 * 109.46829 * 359.97438 * 24 22 20
26 26 H 1.48499 * 109.47125 * 119.99521 * 24 22 20
27 27 H 1.48498 * 109.47317 * 240.00045 * 24 22 20
28 28 C 1.34767 * 111.64255 * 359.97438 * 13 11 10
29 29 O 1.21236 * 127.15879 * 179.97438 * 28 13 11
30 30 H 1.08998 * 109.47503 * 59.99941 * 1 2 3
31 31 H 1.09006 * 109.47136 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47150 * 300.00026 * 1 2 3
33 33 H 1.08003 * 119.98365 * 0.27230 * 4 3 2
34 34 H 1.08010 * 120.00987 * 179.97438 * 5 4 3
35 35 H 1.08001 * 120.01247 * 180.02562 * 8 6 5
36 36 H 1.07999 * 119.99259 * 180.02562 * 9 8 6
37 37 H 0.96992 * 126.69194 * 298.57298 * 10 2 1
38 38 H 1.08994 * 109.47107 * 30.03325 * 14 13 11
39 39 H 1.09001 * 109.46821 * 150.03507 * 14 13 11
40 40 H 1.08997 * 109.47305 * 304.99916 * 19 15 14
41 41 H 1.08998 * 109.47186 * 64.99773 * 19 15 14
42 42 H 0.97001 * 120.00024 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0586 1.4112 0.0000
4 6 2.3616 2.0353 -1.1958
5 6 2.8517 3.3274 -1.1967
6 6 3.0389 3.9972 0.0005
7 9 3.5175 5.2605 0.0008
8 6 2.7351 3.3711 1.1975
9 6 2.2451 2.0790 1.1960
10 7 2.0515 -0.7487 1.1565
11 6 2.7646 -1.7758 0.6601
12 8 3.3365 -2.5970 1.3498
13 7 2.7748 -1.7916 -0.6777
14 6 3.4728 -2.7964 -1.4836
15 6 4.9004 -2.3231 -1.7641
16 1 5.4002 -2.0978 -0.8220
17 6 4.8606 -1.1123 -2.6003
18 7 4.8284 -0.1778 -3.2464
19 6 5.6680 -3.4246 -2.4979
20 6 7.1066 -3.0083 -2.6655
21 1 7.4402 -2.0538 -2.2861
22 6 7.9969 -3.8460 -3.3031
23 7 7.5907 -5.0087 -3.7646
24 14 9.7800 -3.3298 -3.5114
25 1 9.9801 -1.9869 -2.9096
26 1 10.6625 -4.3130 -2.8333
27 1 10.1149 -3.2786 -4.9572
28 6 2.0636 -0.7691 -1.1923
29 8 1.8877 -0.5164 -2.3649
30 1 -0.3634 0.5138 -0.8899
31 1 -0.3634 -1.0277 0.0005
32 1 -0.3633 0.5138 0.8900
33 1 2.2152 1.5128 -2.1296
34 1 3.0887 3.8146 -2.1311
35 1 2.8803 3.8927 2.1320
36 1 2.0076 1.5906 2.1295
37 1 1.9088 -0.5415 2.0932
38 1 3.5033 -3.7407 -0.9403
39 1 2.9446 -2.9366 -2.4267
40 1 5.6217 -4.3471 -1.9192
41 1 5.2205 -3.5880 -3.4783
42 1 8.2170 -5.5979 -4.2135
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000015505748.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:42:35
Heat of formation + Delta-G solvation = -35.687446 kcal
Electronic energy + Delta-G solvation = -30263.272941 eV
Core-core repulsion = 25930.896716 eV
Total energy + Delta-G solvation = -4332.376225 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.128 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-49.16954 -42.83266 -39.51045 -38.62940 -37.06594 -36.38176 -35.03683 -33.65008
-32.11748 -31.62602 -31.23730 -29.50708 -27.64864 -25.34154 -24.23859 -23.46309
-23.20769 -21.89512 -21.49611 -20.45275 -18.45315 -17.84453 -17.33525 -17.22341
-16.63092 -16.46424 -16.15534 -15.85094 -15.60211 -15.46879 -15.38510 -14.64920
-14.52843 -14.31116 -14.14536 -13.77584 -13.56530 -13.42770 -13.17595 -13.07211
-12.88916 -12.60250 -12.53835 -12.14599 -12.07820 -11.79887 -11.54825 -11.45744
-11.12803 -10.94301 -10.89319 -10.60594 -10.39344 -10.24141 -9.98203 -9.81578
-9.51657 -9.44423 -9.20690 -8.98488 -8.47817 -6.11909 -4.15086 0.67261
0.89257 1.48731 2.08338 2.81168 2.92627 3.24746 3.28118 3.36245
3.41029 3.56511 3.59345 3.63853 3.88263 3.97757 4.38872 4.39623
4.42940 4.58109 4.63463 4.91075 4.98239 5.02522 5.09725 5.18803
5.26513 5.32055 5.39088 5.49693 5.52097 5.56524 5.63054 5.76237
5.84156 5.93312 6.03175 6.21710 6.37955 6.50117 6.55836 6.94716
7.25006 7.36485 7.44883 7.82564 8.00962 8.18506 8.37994 8.88507
9.50535 10.99025
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.011624 B = 0.003471 C = 0.002993
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2408.254372 B = 8064.908698 C = 9353.374762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C 0.166 3.834
3 C -0.108 4.108
4 C -0.072 4.072
5 C -0.145 4.145
6 C 0.107 3.893
7 F -0.138 7.138
8 C -0.155 4.155
9 C -0.068 4.068
10 N -0.722 5.722
11 C 0.705 3.295
12 O -0.529 6.529
13 N -0.574 5.574
14 C 0.123 3.877
15 C -0.008 4.008
16 H 0.107 0.893
17 C 0.229 3.771
18 N -0.452 5.452
19 C 0.035 3.965
20 C -0.526 4.526
21 H 0.057 0.943
22 C 0.064 3.936
23 N -0.890 5.890
24 Si 0.892 3.108
25 H -0.273 1.273
26 H -0.282 1.282
27 H -0.283 1.283
28 C 0.529 3.471
29 O -0.447 6.447
30 H 0.086 0.914
31 H 0.074 0.926
32 H 0.080 0.920
33 H 0.152 0.848
34 H 0.140 0.860
35 H 0.139 0.861
36 H 0.133 0.867
37 H 0.437 0.563
38 H 0.118 0.882
39 H 0.102 0.898
40 H 0.044 0.956
41 H 0.030 0.970
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.764 11.976 12.274 24.691
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.075 3.925
3 C -0.109 4.109
4 C -0.091 4.091
5 C -0.164 4.164
6 C 0.088 3.912
7 F -0.116 7.116
8 C -0.173 4.173
9 C -0.086 4.086
10 N -0.387 5.387
11 C 0.405 3.595
12 O -0.401 6.401
13 N -0.319 5.319
14 C 0.002 3.998
15 C -0.030 4.030
16 H 0.125 0.875
17 C -0.088 4.088
18 N -0.129 5.129
19 C -0.004 4.004
20 C -0.564 4.564
21 H 0.075 0.925
22 C -0.138 4.138
23 N -0.528 5.528
24 Si 0.720 3.280
25 H -0.197 1.197
26 H -0.208 1.208
27 H -0.209 1.209
28 C 0.315 3.685
29 O -0.316 6.316
30 H 0.104 0.896
31 H 0.093 0.907
32 H 0.099 0.901
33 H 0.169 0.831
34 H 0.158 0.842
35 H 0.157 0.843
36 H 0.151 0.849
37 H 0.282 0.718
38 H 0.136 0.864
39 H 0.121 0.879
40 H 0.062 0.938
41 H 0.048 0.952
42 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -17.466 12.869 10.852 24.258
hybrid contribution 1.274 0.229 0.474 1.379
sum -16.192 13.098 11.326 23.707
Atomic orbital electron populations
1.22004 0.89170 1.04069 1.04708 1.20100 0.97054 0.89866 0.85448
1.19429 1.03338 0.93802 0.94378 1.21343 0.94724 0.93975 0.99010
1.21198 1.01972 0.95629 0.97558 1.17820 0.98560 0.80109 0.94755
1.91516 1.85639 1.37065 1.97426 1.21072 1.02920 0.96035 0.97307
1.20625 0.97297 0.93397 0.97318 1.45634 1.55533 1.28951 1.08590
1.15854 0.79529 0.82242 0.81831 1.91053 1.47330 1.40964 1.60772
1.46549 1.48659 1.28847 1.07870 1.22062 0.91569 0.90331 0.95811
1.19621 0.95398 0.90061 0.97967 0.87516 1.29022 0.92321 0.93841
0.93620 1.81019 1.09260 1.12588 1.09996 1.19165 0.94354 0.91196
0.95661 1.21104 0.93627 1.03681 1.37982 0.92497 1.24929 0.98928
0.94826 0.95143 1.69940 1.35233 1.09352 1.38312 0.86526 0.84820
0.78767 0.77927 1.19717 1.20757 1.20929 1.20558 0.77734 0.80577
0.89674 1.90809 1.56474 1.67988 1.16280 0.89555 0.90707 0.90080
0.83081 0.84168 0.84287 0.84947 0.71796 0.86355 0.87949 0.93810
0.95180 0.92768
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.91 8.97 37.16 0.33 -0.58 16
2 C 0.17 1.56 1.16 -133.25 -0.15 1.41 16
3 C -0.11 -1.07 4.89 -104.62 -0.51 -1.58 16
4 C -0.07 -0.85 9.17 -39.59 -0.36 -1.22 16
5 C -0.14 -1.64 10.03 -39.52 -0.40 -2.04 16
6 C 0.11 1.15 7.30 -39.42 -0.29 0.86 16
7 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16
8 C -0.15 -1.34 10.03 -39.52 -0.40 -1.74 16
9 C -0.07 -0.54 9.35 -39.60 -0.37 -0.91 16
10 N -0.72 -6.45 5.37 -54.02 -0.29 -6.74 16
11 C 0.70 9.19 8.62 -88.02 -0.76 8.43 16
12 O -0.53 -8.51 17.48 5.33 0.09 -8.42 16
13 N -0.57 -7.85 2.49 -120.73 -0.30 -8.15 16
14 C 0.12 1.84 5.13 -4.04 -0.02 1.82 16
15 C -0.01 -0.15 2.42 -93.41 -0.23 -0.37 16
16 H 0.11 2.00 8.14 -51.93 -0.42 1.58 16
17 C 0.23 4.76 12.37 -20.74 -0.26 4.50 16
18 N -0.45 -9.96 18.54 42.18 0.78 -9.18 16
19 C 0.03 0.80 4.42 -27.88 -0.12 0.68 16
20 C -0.53 -14.03 8.60 -34.44 -0.30 -14.32 16
21 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16
22 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16
23 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16
24 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16
25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
27 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16
28 C 0.53 6.93 5.74 -10.56 -0.06 6.87 16
29 O -0.45 -6.89 14.94 5.60 0.08 -6.80 16
30 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16
31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.15 2.04 5.61 -52.48 -0.29 1.75 16
34 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16
35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16
36 H 0.13 0.65 7.12 -52.49 -0.37 0.28 16
37 H 0.44 2.58 8.19 -40.82 -0.33 2.24 16
38 H 0.12 1.61 7.86 -51.93 -0.41 1.20 16
39 H 0.10 1.46 8.00 -51.93 -0.42 1.04 16
40 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16
41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
42 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
LS Contribution 371.53 15.07 5.60 5.60
Total: -1.00 -33.22 371.53 -7.01 -40.22
By element:
Atomic # 1 Polarization: 4.47 SS G_CDS: -4.74 Total: -0.27 kcal
Atomic # 6 Polarization: 7.45 SS G_CDS: -3.99 Total: 3.46 kcal
Atomic # 7 Polarization: -49.58 SS G_CDS: 0.93 Total: -48.65 kcal
Atomic # 8 Polarization: -15.40 SS G_CDS: 0.18 Total: -15.22 kcal
Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal
Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal
Total LS contribution 5.60 Total: 5.60 kcal
Total: -33.22 -7.01 -40.22 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000015505748.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 4.534 kcal
(2) G-P(sol) polarization free energy of solvation -33.215 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.221 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds