Wall clock time and date at job start Wed Apr 1 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30498 * 125.65052 * 2 1 4 4 C 1.34123 * 109.25471 * 180.29546 * 3 2 1 5 5 C 1.34671 * 108.02156 * 359.72756 * 4 3 2 6 6 N 1.35042 * 125.64900 * 179.83162 * 2 1 3 7 7 C 1.46505 * 126.39608 * 359.97274 * 6 2 1 8 8 C 1.52994 * 109.47295 * 84.71376 * 7 6 2 9 9 C 1.53006 * 109.47145 * 179.97438 * 8 7 6 10 10 N 1.46501 * 109.46998 * 180.02562 * 9 8 7 11 11 C 1.34779 * 119.99813 * 180.02562 * 10 9 8 12 12 O 1.21603 * 120.00080 * 0.02562 * 11 10 9 13 13 C 1.47423 * 119.99792 * 179.97438 * 11 10 9 14 14 C 1.39684 * 120.21604 * 359.97438 * 13 11 10 15 15 C 1.37804 * 119.93879 * 179.97438 * 14 13 11 16 16 C 1.38668 * 120.38170 * 0.02562 * 15 14 13 17 17 C 1.37907 * 120.43744 * 359.97438 * 16 15 14 18 18 C 1.39111 * 120.04979 * 359.74394 * 17 16 15 19 19 S 1.76201 * 120.19324 * 180.25814 * 18 17 16 20 20 C 1.76201 * 99.99655 * 6.86379 * 19 18 17 21 21 H 1.08000 * 120.00045 * 5.66284 * 20 19 18 22 22 C 1.38809 * 120.00152 * 185.65815 * 20 19 18 23 23 N 1.31556 * 119.99720 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00106 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46852 * 60.00189 * 24 22 20 26 26 H 1.48498 * 109.47046 * 180.02562 * 24 22 20 27 27 H 1.48492 * 109.47050 * 300.00183 * 24 22 20 28 28 H 1.09005 * 109.46923 * 270.17314 * 1 2 3 29 29 H 1.09000 * 109.47368 * 30.16568 * 1 2 3 30 30 H 1.08993 * 109.47330 * 150.17412 * 1 2 3 31 31 H 1.08004 * 125.99083 * 179.72533 * 4 3 2 32 32 H 1.08007 * 126.59150 * 179.97438 * 5 4 3 33 33 H 1.08996 * 109.46922 * 204.71696 * 7 6 2 34 34 H 1.09006 * 109.47171 * 324.71339 * 7 6 2 35 35 H 1.08996 * 109.47397 * 300.00030 * 8 7 6 36 36 H 1.09006 * 109.47041 * 59.99884 * 8 7 6 37 37 H 1.08996 * 109.46825 * 299.99921 * 9 8 7 38 38 H 1.08997 * 109.46955 * 60.00220 * 9 8 7 39 39 H 0.97001 * 119.99743 * 359.97438 * 10 9 8 40 40 H 1.08000 * 120.03355 * 359.95510 * 14 13 11 41 41 H 1.07997 * 119.81401 * 180.02562 * 15 14 13 42 42 H 1.08002 * 119.77493 * 179.97438 * 16 15 14 43 43 H 1.08001 * 119.97694 * 180.02562 * 17 16 15 44 44 H 0.96996 * 119.99628 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0065 5 6 3.5925 -0.6643 -0.0046 6 7 2.2941 -1.0974 0.0032 7 6 1.8425 -2.4910 0.0079 8 6 1.5583 -2.9399 -1.4269 9 6 1.0872 -4.3956 -1.4220 10 7 0.8157 -4.8256 -2.7959 11 6 0.3856 -6.0800 -3.0369 12 8 0.2225 -6.8547 -2.1139 13 6 0.1118 -6.5124 -4.4195 14 6 0.2961 -5.6257 -5.4829 15 6 0.0389 -6.0362 -6.7730 16 6 -0.4031 -7.3264 -7.0236 17 6 -0.5903 -8.2147 -5.9854 18 6 -0.3307 -7.8213 -4.6766 19 16 -0.5621 -8.9553 -3.3480 20 6 -0.9095 -10.4243 -4.2567 21 1 -0.8342 -10.4234 -5.3341 22 6 -1.2799 -11.5829 -3.5879 23 7 -1.3720 -11.5839 -2.2756 24 14 -1.6490 -13.1402 -4.5514 25 1 -0.4458 -13.5410 -5.3240 26 1 -2.0191 -14.2281 -3.6108 27 1 -2.7759 -12.8891 -5.4852 28 1 -0.3633 0.0031 1.0277 29 1 -0.3634 0.8885 -0.5164 30 1 -0.3633 -0.8915 -0.5111 31 1 4.4098 1.3410 -0.0123 32 1 4.4776 -1.2833 -0.0090 33 1 2.6187 -3.1230 0.4393 34 1 0.9326 -2.5762 0.6022 35 1 0.7821 -2.3079 -1.8583 36 1 2.4681 -2.8547 -2.0212 37 1 1.8638 -5.0273 -0.9908 38 1 0.1775 -4.4811 -0.8277 39 1 0.9447 -4.2072 -3.5321 40 1 0.6394 -4.6193 -5.2943 41 1 0.1824 -5.3491 -7.5938 42 1 -0.6021 -7.6376 -8.0385 43 1 -0.9345 -9.2179 -6.1891 44 1 -1.6305 -12.3936 -1.8082 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058971669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:29 Heat of formation + Delta-G solvation = 47.466751 kcal Electronic energy + Delta-G solvation = -25983.315187 eV Core-core repulsion = 22220.757975 eV Total energy + Delta-G solvation = -3762.557212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.36030 -39.59818 -37.63092 -36.25478 -34.17051 -32.79646 -32.02054 -31.52816 -30.33125 -30.12745 -27.22770 -26.03299 -25.86814 -23.31081 -22.30689 -21.80479 -21.63443 -20.33595 -19.83936 -18.27036 -17.43627 -17.18376 -16.06700 -16.00167 -15.66983 -15.57994 -15.18074 -14.78411 -14.50680 -14.21675 -14.02567 -13.90792 -13.74496 -13.35574 -13.28336 -13.02959 -12.85984 -12.76798 -12.66064 -12.57440 -12.00146 -11.96897 -11.63065 -11.37094 -11.26329 -11.21670 -10.99222 -10.37563 -10.21276 -9.97040 -9.85306 -9.69999 -9.54572 -8.91998 -8.77984 -8.60813 -8.39254 -8.13525 -6.58979 -6.50393 -4.21397 1.46873 1.75461 1.96554 2.42228 2.90099 3.07128 3.10987 3.15261 3.33981 3.41012 3.43941 4.02494 4.18673 4.21448 4.41468 4.42966 4.52175 4.66332 4.85633 4.90749 4.92783 5.01730 5.07627 5.19100 5.22053 5.24608 5.30879 5.34962 5.49487 5.55250 5.58870 5.66871 5.76146 5.93005 6.03470 6.06099 6.33252 6.50407 6.53438 6.61035 6.79093 6.90556 6.97168 7.08226 7.40060 7.54025 7.77655 7.85558 8.11596 8.68620 8.95791 10.52842 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.018325 B = 0.002065 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.577729 B =13554.362980 C =14602.488656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.205 3.795 3 N -0.495 5.495 4 C -0.031 4.031 5 C -0.058 4.058 6 N -0.454 5.454 7 C 0.106 3.894 8 C -0.147 4.147 9 C 0.127 3.873 10 N -0.740 5.740 11 C 0.553 3.447 12 O -0.508 6.508 13 C -0.179 4.179 14 C -0.061 4.061 15 C -0.187 4.187 16 C -0.076 4.076 17 C -0.153 4.153 18 C -0.057 4.057 19 S 0.186 5.814 20 C -0.597 4.597 21 H 0.091 0.909 22 C 0.084 3.916 23 N -0.858 5.858 24 Si 0.919 3.081 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.270 1.270 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.395 0.605 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.971 18.706 0.913 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.190 4.190 6 N -0.137 5.137 7 C -0.017 4.017 8 C -0.185 4.185 9 C 0.002 3.998 10 N -0.395 5.395 11 C 0.342 3.658 12 O -0.385 6.385 13 C -0.194 4.194 14 C -0.081 4.081 15 C -0.211 4.211 16 C -0.098 4.098 17 C -0.178 4.178 18 C -0.177 4.177 19 S 0.450 5.550 20 C -0.743 4.743 21 H 0.108 0.892 22 C -0.128 4.128 23 N -0.490 5.490 24 Si 0.744 3.256 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.195 1.195 28 H 0.098 0.902 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.186 0.814 32 H 0.191 0.809 33 H 0.117 0.883 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.230 0.770 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.157 0.843 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.467 18.494 3.294 19.564 hybrid contribution 0.281 -1.627 -2.445 2.950 sum 5.748 16.867 0.850 17.839 Atomic orbital electron populations 1.20226 0.84970 1.04175 1.03606 1.23340 0.95762 0.81392 1.05218 1.70247 1.02334 1.28407 1.20486 1.22283 0.94780 0.92827 1.07957 1.22737 0.87127 0.96913 1.12258 1.45446 1.06518 1.07339 1.54382 1.21814 1.02589 0.79181 0.98138 1.22160 1.03133 0.96889 0.96363 1.21067 1.01318 0.92676 0.84729 1.45782 1.71343 1.14161 1.08228 1.18311 0.77134 0.81106 0.89212 1.90789 1.50946 1.51581 1.45161 1.19069 1.13366 0.94976 0.92024 1.20883 0.97384 0.97216 0.92630 1.20642 1.07685 0.96828 0.95982 1.21098 0.96891 0.93567 0.98275 1.21442 1.03719 1.01076 0.91537 1.23094 0.96706 0.97312 1.00589 1.84721 1.71804 0.96465 1.01983 1.24017 1.54534 0.98414 0.97347 0.89173 1.25103 0.93322 0.99256 0.95070 1.69962 1.42378 1.29655 1.07036 0.86196 0.79307 0.80480 0.79576 1.19458 1.20533 1.19465 0.90159 0.89168 0.90627 0.81439 0.80912 0.88287 0.88385 0.90400 0.90399 0.91235 0.91173 0.76978 0.87255 0.87051 0.86968 0.84341 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.04 36.01 0.36 -0.12 16 2 C 0.21 2.01 7.90 -155.42 -1.23 0.79 16 3 N -0.50 -5.93 11.25 -10.81 -0.12 -6.05 16 4 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 5 C -0.06 -0.48 11.58 -16.56 -0.19 -0.68 16 6 N -0.45 -3.80 2.75 -113.90 -0.31 -4.12 16 7 C 0.11 0.65 5.68 -4.04 -0.02 0.63 16 8 C -0.15 -0.99 5.65 -26.73 -0.15 -1.15 16 9 C 0.13 1.26 5.67 -4.04 -0.02 1.24 16 10 N -0.74 -9.31 5.51 -61.38 -0.34 -9.65 16 11 C 0.55 10.07 7.75 -12.52 -0.10 9.97 16 12 O -0.51 -11.28 13.77 5.28 0.07 -11.20 16 13 C -0.18 -3.39 5.89 -104.75 -0.62 -4.01 16 14 C -0.06 -0.92 9.53 -39.20 -0.37 -1.30 16 15 C -0.19 -2.77 10.02 -39.58 -0.40 -3.17 16 16 C -0.08 -1.26 10.03 -39.54 -0.40 -1.66 16 17 C -0.15 -3.11 9.22 -39.38 -0.36 -3.47 16 18 C -0.06 -1.27 6.14 -38.39 -0.24 -1.50 16 19 S 0.19 4.87 18.56 -107.50 -2.00 2.87 16 20 C -0.60 -16.16 9.00 30.94 0.28 -15.88 16 21 H 0.09 2.31 4.98 -52.49 -0.26 2.05 16 22 C 0.08 2.26 5.49 -17.46 -0.10 2.16 16 23 N -0.86 -24.33 13.22 55.49 0.73 -23.60 16 24 Si 0.92 20.35 29.55 -169.99 -5.02 15.32 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.40 7.33 -51.93 -0.38 0.02 16 31 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.10 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.10 0.51 7.94 -51.93 -0.41 0.09 16 35 H 0.08 0.52 7.64 -51.93 -0.40 0.12 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.40 3.93 6.50 -40.82 -0.27 3.66 16 40 H 0.11 1.22 6.40 -52.49 -0.34 0.88 16 41 H 0.11 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.14 2.94 5.04 -52.49 -0.26 2.68 16 44 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -34.37 382.62 -10.66 -45.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.68 Total: 4.29 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.76 Total: -18.66 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: -0.04 Total: -43.42 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.07 Total: -11.20 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.00 Total: 2.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.37 -10.66 -45.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058971669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.496 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds