Wall clock time and date at job start Wed Apr 1 2020 03:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.53561 * 2 1 4 4 C 1.38217 * 120.01518 * 240.42954 * 3 2 1 5 5 C 1.38222 * 120.02749 * 179.72146 * 4 3 2 6 6 C 1.38274 * 120.04847 * 0.55054 * 5 4 3 7 7 C 1.38176 * 120.02433 * 359.72714 * 6 5 4 8 8 C 1.38441 * 120.00963 * 60.70216 * 3 2 1 9 9 F 1.35102 * 120.02631 * 0.02562 * 8 3 2 10 10 N 1.47317 * 110.59866 * 237.00594 * 2 1 3 11 11 C 1.34522 * 106.61690 * 241.46984 * 10 2 1 12 12 O 1.21545 * 123.77201 * 179.97438 * 11 10 2 13 13 N 1.33790 * 112.46288 * 0.02562 * 11 10 2 14 14 C 1.46497 * 124.18079 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47360 * 270.03832 * 14 13 11 16 16 H 1.08996 * 109.46978 * 55.00145 * 15 14 13 17 17 C 1.47192 * 109.46865 * 295.00179 * 15 14 13 18 18 N 4.63128 * 77.65329 * 134.15203 * 2 1 3 19 19 C 1.52997 * 109.47307 * 174.99904 * 15 14 13 20 20 C 1.50690 * 109.47316 * 185.00257 * 19 15 14 21 21 H 1.08001 * 120.00194 * 359.97438 * 20 19 15 22 22 C 1.37874 * 120.00346 * 180.02562 * 20 19 15 23 23 N 1.31515 * 120.00067 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47242 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46971 * 119.99655 * 24 22 20 27 27 H 1.48498 * 109.46870 * 239.99725 * 24 22 20 28 28 C 1.34775 * 111.64165 * 359.97438 * 13 11 10 29 29 O 1.21227 * 127.15436 * 179.97438 * 28 13 11 30 30 H 1.09002 * 109.47153 * 297.86793 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.86984 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.86965 * 1 2 3 33 33 H 1.08001 * 119.98653 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.98135 * 180.27361 * 5 4 3 35 35 H 1.07995 * 119.98841 * 179.74718 * 6 5 4 36 36 H 1.07999 * 120.01019 * 180.02562 * 7 6 5 37 37 H 0.96998 * 126.69060 * 61.45429 * 10 2 1 38 38 H 1.09004 * 109.47101 * 30.04413 * 14 13 11 39 39 H 1.09004 * 109.46761 * 150.03824 * 14 13 11 40 40 H 1.08997 * 109.46952 * 305.00522 * 19 15 14 41 41 H 1.09004 * 109.46762 * 64.99854 * 19 15 14 42 42 H 0.96993 * 120.00401 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8543 1.8516 -1.0409 5 6 3.3345 3.1477 -1.0441 6 6 3.0291 4.0018 -0.0004 7 6 2.2386 3.5620 1.0441 8 6 1.7522 2.2655 1.0455 9 9 0.9795 1.8343 2.0665 10 7 2.0483 -0.7509 -1.1566 11 6 2.7599 -1.7789 -0.6602 12 8 3.3284 -2.6026 -1.3500 13 7 2.7712 -1.7942 0.6775 14 6 3.4672 -2.8003 1.4833 15 6 2.5233 -3.9714 1.7637 16 1 2.1371 -4.3603 0.8216 17 6 1.4034 -3.5095 2.5998 18 7 0.5397 -3.1514 3.2461 19 6 3.2856 -5.0765 2.4974 20 6 2.3913 -6.2778 2.6648 21 1 1.3801 -6.2552 2.2861 22 6 2.8636 -7.4054 3.3022 23 7 4.0947 -7.4329 3.7638 24 14 1.7547 -8.8943 3.5103 25 1 0.4271 -8.6106 2.9086 26 1 2.3661 -10.0654 2.8321 27 1 1.5894 -9.1901 4.9561 28 6 2.0630 -0.7695 1.1922 29 8 1.8881 -0.5163 2.3648 30 1 -0.3633 0.4804 0.9085 31 1 -0.3633 -1.0270 -0.0382 32 1 -0.3634 0.5466 -0.8703 33 1 3.0974 1.1839 -1.8542 34 1 3.9525 3.4923 -1.8600 35 1 3.4082 5.0130 -0.0018 36 1 1.9998 4.2295 1.8589 37 1 1.9042 -0.5445 -2.0933 38 1 4.3411 -3.1600 0.9400 39 1 3.7837 -2.3549 2.4265 40 1 4.1658 -5.3566 1.9187 41 1 3.5955 -4.7148 3.4779 42 1 4.4271 -8.2263 4.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065976263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:50 Heat of formation + Delta-G solvation = -30.539931 kcal Electronic energy + Delta-G solvation = -30481.866206 eV Core-core repulsion = 26149.713194 eV Total energy + Delta-G solvation = -4332.153012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.10819 -42.71765 -39.45177 -38.57828 -37.09458 -36.34974 -35.03023 -33.64205 -32.23647 -31.44861 -31.08834 -29.72145 -27.60959 -25.29246 -24.27100 -23.51838 -23.00923 -21.86609 -21.57575 -20.47408 -18.38057 -17.87007 -17.33255 -16.71941 -16.63627 -16.62422 -16.40250 -15.83340 -15.51202 -15.45486 -15.27839 -14.65558 -14.53904 -14.29704 -14.12411 -13.97333 -13.54620 -13.34306 -13.02084 -12.81854 -12.77643 -12.56705 -12.51090 -12.12865 -12.07168 -11.75992 -11.50063 -11.46498 -11.10563 -10.95111 -10.88847 -10.58619 -10.37301 -10.29948 -9.94417 -9.83654 -9.48441 -9.42877 -9.17631 -9.05126 -8.46048 -6.09964 -4.13112 0.60857 0.76063 1.58698 2.13416 2.84164 2.96025 3.14885 3.29393 3.37373 3.42145 3.60589 3.64935 3.72135 3.85729 3.92275 4.33643 4.39249 4.41083 4.57706 4.67694 4.80602 4.90532 5.04568 5.19268 5.26586 5.28343 5.34690 5.36563 5.45003 5.54910 5.60928 5.65693 5.74604 5.80179 5.88712 5.93812 6.24859 6.40896 6.41655 6.57112 6.99095 7.35301 7.39021 7.47727 7.84507 8.04470 8.20689 8.42192 8.90489 9.52276 11.01016 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002914 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.094263 B = 9606.365508 C =10070.096503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.169 3.831 3 C -0.134 4.134 4 C -0.072 4.072 5 C -0.132 4.132 6 C -0.082 4.082 7 C -0.155 4.155 8 C 0.127 3.873 9 F -0.117 7.117 10 N -0.722 5.722 11 C 0.705 3.295 12 O -0.530 6.530 13 N -0.575 5.575 14 C 0.124 3.876 15 C -0.007 4.007 16 H 0.108 0.892 17 C 0.228 3.772 18 N -0.452 5.452 19 C 0.035 3.965 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.063 3.937 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.282 1.282 27 H -0.283 1.283 28 C 0.525 3.475 29 O -0.433 6.433 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.438 0.562 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.030 0.970 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.095 24.563 -13.301 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.077 3.923 3 C -0.136 4.136 4 C -0.090 4.090 5 C -0.150 4.150 6 C -0.100 4.100 7 C -0.174 4.174 8 C 0.107 3.893 9 F -0.095 7.095 10 N -0.387 5.387 11 C 0.406 3.594 12 O -0.402 6.402 13 N -0.322 5.322 14 C 0.003 3.997 15 C -0.030 4.030 16 H 0.125 0.875 17 C -0.089 4.089 18 N -0.128 5.128 19 C -0.004 4.004 20 C -0.563 4.563 21 H 0.075 0.925 22 C -0.139 4.139 23 N -0.529 5.529 24 Si 0.720 3.280 25 H -0.197 1.197 26 H -0.208 1.208 27 H -0.210 1.210 28 C 0.309 3.691 29 O -0.299 6.299 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.153 0.847 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.158 0.842 37 H 0.283 0.717 38 H 0.136 0.864 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.040 24.569 -11.813 27.337 hybrid contribution -0.434 -1.060 -0.276 1.179 sum -2.475 23.509 -12.089 26.550 Atomic orbital electron populations 1.22077 0.89289 1.04534 1.04843 1.20021 0.97189 0.89372 0.85719 1.19565 1.03171 0.93809 0.97041 1.20888 0.94817 0.96143 0.97191 1.21206 1.00931 0.93472 0.99380 1.21122 0.95989 1.00152 0.92780 1.21207 1.00636 0.94460 1.01114 1.17494 0.93369 0.92907 0.85541 1.91617 1.71613 1.89799 1.56517 1.45593 1.55612 1.28959 1.08574 1.15844 0.79613 0.82028 0.81896 1.91051 1.47791 1.40535 1.60830 1.46559 1.49434 1.28383 1.07777 1.22043 0.95341 0.86519 0.95802 1.19618 0.89473 0.95938 0.97945 0.87459 1.29034 0.94109 0.92107 0.93666 1.81044 1.11701 1.10155 1.09910 1.19164 0.95474 0.90080 0.95679 1.21107 0.98893 0.98380 1.37962 0.92470 1.24939 0.95085 0.98721 0.95162 1.69938 1.15299 1.29264 1.38350 0.86516 0.80888 0.82660 0.77912 1.19710 1.20774 1.20950 1.20550 0.78008 0.80806 0.89735 1.90881 1.54777 1.68308 1.15914 0.89234 0.90505 0.90129 0.84650 0.84872 0.84716 0.84220 0.71704 0.86406 0.88100 0.93805 0.95202 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.74 37.16 0.32 -1.16 16 2 C 0.17 1.85 1.03 -133.24 -0.14 1.71 16 3 C -0.13 -1.30 4.83 -104.55 -0.50 -1.80 16 4 C -0.07 -0.53 9.38 -39.59 -0.37 -0.90 16 5 C -0.13 -0.79 10.04 -39.57 -0.40 -1.19 16 6 C -0.08 -0.50 10.04 -39.59 -0.40 -0.90 16 7 C -0.16 -1.24 10.03 -39.51 -0.40 -1.63 16 8 C 0.13 1.34 6.83 -39.42 -0.27 1.07 16 9 F -0.12 -1.54 13.29 2.25 0.03 -1.51 16 10 N -0.72 -7.02 4.65 -54.02 -0.25 -7.27 16 11 C 0.71 9.66 8.62 -88.03 -0.76 8.90 16 12 O -0.53 -8.70 17.48 5.33 0.09 -8.60 16 13 N -0.58 -8.51 2.49 -120.73 -0.30 -8.82 16 14 C 0.12 1.97 5.13 -4.04 -0.02 1.95 16 15 C -0.01 -0.14 2.42 -93.41 -0.23 -0.37 16 16 H 0.11 2.03 8.14 -51.93 -0.42 1.61 16 17 C 0.23 4.92 12.37 -20.74 -0.26 4.66 16 18 N -0.45 -10.46 18.54 42.18 0.78 -9.68 16 19 C 0.03 0.81 4.42 -27.89 -0.12 0.69 16 20 C -0.53 -14.18 8.60 -34.45 -0.30 -14.48 16 21 H 0.06 1.55 7.59 -52.49 -0.40 1.15 16 22 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 23 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 24 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 25 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 28 C 0.52 7.82 6.06 -10.55 -0.06 7.76 16 29 O -0.43 -7.74 15.13 5.60 0.08 -7.65 16 30 H 0.09 1.00 6.52 -51.93 -0.34 0.66 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.14 0.79 6.67 -52.49 -0.35 0.44 16 34 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.44 2.84 8.46 -40.82 -0.35 2.50 16 38 H 0.12 1.70 7.86 -51.93 -0.41 1.29 16 39 H 0.10 1.57 8.00 -51.93 -0.42 1.15 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 LS Contribution 368.03 15.07 5.55 5.55 Total: -1.00 -34.49 368.03 -7.07 -41.55 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -4.77 Total: -1.24 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -3.99 Total: 5.97 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.97 Total: -50.62 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.18 Total: -16.26 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.03 Total: -1.51 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.49 -7.07 -41.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065976263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.012 kcal (2) G-P(sol) polarization free energy of solvation -34.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds