Wall clock time and date at job start Wed Apr 1 2020 03:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 110.53561 * 2 1 4 4 C 1.38217 * 120.01518 * 240.42954 * 3 2 1 5 5 C 1.38222 * 120.02749 * 179.72146 * 4 3 2 6 6 C 1.38274 * 120.04847 * 0.55054 * 5 4 3 7 7 C 1.38176 * 120.02433 * 359.72714 * 6 5 4 8 8 C 1.38441 * 120.00963 * 60.70216 * 3 2 1 9 9 F 1.35102 * 120.02631 * 0.02562 * 8 3 2 10 10 N 1.47317 * 110.59866 * 237.00594 * 2 1 3 11 11 C 1.34522 * 106.61690 * 241.46984 * 10 2 1 12 12 O 1.21545 * 123.77201 * 179.97438 * 11 10 2 13 13 N 1.33790 * 112.46288 * 0.02562 * 11 10 2 14 14 C 1.46497 * 124.18079 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47360 * 270.03832 * 14 13 11 16 16 H 1.08996 * 109.46978 * 55.00145 * 15 14 13 17 17 C 1.47192 * 109.46865 * 295.00179 * 15 14 13 18 18 N 4.63128 * 77.65329 * 134.15203 * 2 1 3 19 19 C 1.52997 * 109.47307 * 174.99904 * 15 14 13 20 20 C 1.50690 * 109.47316 * 185.00257 * 19 15 14 21 21 H 1.08001 * 120.00194 * 359.97438 * 20 19 15 22 22 C 1.37874 * 120.00346 * 180.02562 * 20 19 15 23 23 N 1.31515 * 120.00067 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00243 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47242 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46971 * 119.99655 * 24 22 20 27 27 H 1.48498 * 109.46870 * 239.99725 * 24 22 20 28 28 C 1.34775 * 111.64165 * 359.97438 * 13 11 10 29 29 O 1.21227 * 127.15436 * 179.97438 * 28 13 11 30 30 H 1.09002 * 109.47153 * 297.86793 * 1 2 3 31 31 H 1.09001 * 109.46832 * 177.86984 * 1 2 3 32 32 H 1.09004 * 109.47261 * 57.86965 * 1 2 3 33 33 H 1.08001 * 119.98653 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.98135 * 180.27361 * 5 4 3 35 35 H 1.07995 * 119.98841 * 179.74718 * 6 5 4 36 36 H 1.07999 * 120.01019 * 180.02562 * 7 6 5 37 37 H 0.96998 * 126.69060 * 61.45429 * 10 2 1 38 38 H 1.09004 * 109.47101 * 30.04413 * 14 13 11 39 39 H 1.09004 * 109.46761 * 150.03824 * 14 13 11 40 40 H 1.08997 * 109.46952 * 305.00522 * 19 15 14 41 41 H 1.09004 * 109.46762 * 64.99854 * 19 15 14 42 42 H 0.96993 * 120.00401 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.8543 1.8516 -1.0409 5 6 3.3345 3.1477 -1.0441 6 6 3.0291 4.0018 -0.0004 7 6 2.2386 3.5620 1.0441 8 6 1.7522 2.2655 1.0455 9 9 0.9795 1.8343 2.0665 10 7 2.0483 -0.7509 -1.1566 11 6 2.7599 -1.7789 -0.6602 12 8 3.3284 -2.6026 -1.3500 13 7 2.7712 -1.7942 0.6775 14 6 3.4672 -2.8003 1.4833 15 6 2.5233 -3.9714 1.7637 16 1 2.1371 -4.3603 0.8216 17 6 1.4034 -3.5095 2.5998 18 7 0.5397 -3.1514 3.2461 19 6 3.2856 -5.0765 2.4974 20 6 2.3913 -6.2778 2.6648 21 1 1.3801 -6.2552 2.2861 22 6 2.8636 -7.4054 3.3022 23 7 4.0947 -7.4329 3.7638 24 14 1.7547 -8.8943 3.5103 25 1 0.4271 -8.6106 2.9086 26 1 2.3661 -10.0654 2.8321 27 1 1.5894 -9.1901 4.9561 28 6 2.0630 -0.7695 1.1922 29 8 1.8881 -0.5163 2.3648 30 1 -0.3633 0.4804 0.9085 31 1 -0.3633 -1.0270 -0.0382 32 1 -0.3634 0.5466 -0.8703 33 1 3.0974 1.1839 -1.8542 34 1 3.9525 3.4923 -1.8600 35 1 3.4082 5.0130 -0.0018 36 1 1.9998 4.2295 1.8589 37 1 1.9042 -0.5445 -2.0933 38 1 4.3411 -3.1600 0.9400 39 1 3.7837 -2.3549 2.4265 40 1 4.1658 -5.3566 1.9187 41 1 3.5955 -4.7148 3.4779 42 1 4.4271 -8.2263 4.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065976263.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:42:49 Heat of formation + Delta-G solvation = -51.843265 kcal Electronic energy + Delta-G solvation = -30482.789988 eV Core-core repulsion = 26149.713194 eV Total energy + Delta-G solvation = -4333.076794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -49.91930 -43.78867 -40.14985 -39.74267 -38.56569 -37.49379 -36.43813 -35.46533 -33.72174 -32.60246 -31.67181 -30.42392 -29.28493 -26.58170 -25.57821 -24.36261 -23.81703 -23.64538 -22.50126 -21.48818 -19.34030 -18.88185 -18.63927 -18.27798 -17.85365 -17.66217 -17.43682 -16.82861 -16.65824 -16.46232 -16.36949 -16.24941 -15.41848 -15.40241 -15.14260 -15.03454 -14.91277 -14.50924 -14.37351 -14.04109 -13.95675 -13.66158 -13.51793 -13.48706 -13.19534 -13.15567 -12.97589 -12.72703 -12.64551 -12.53833 -12.19575 -12.12884 -12.01953 -11.63398 -11.41148 -11.36598 -10.89078 -10.66263 -10.58225 -10.03673 -9.68805 -8.22391 -6.30847 -0.01030 0.19502 0.48189 1.06280 1.37618 1.40210 1.50824 1.76401 1.86045 1.91986 1.95512 2.39543 2.51627 2.79982 3.03086 3.09198 3.14434 3.28976 3.54500 3.81716 3.86693 3.88476 4.08932 4.12361 4.29711 4.34100 4.35099 4.43273 4.47655 4.58978 4.70690 4.77335 4.80670 4.92414 5.04741 5.13085 5.29744 5.39620 5.41947 5.52585 5.72692 5.74211 5.87101 5.90860 6.13611 6.24606 6.65869 6.81231 7.02096 7.37423 8.88803 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.020889 B = 0.002914 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.094263 B = 9606.365508 C =10070.096503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.179 3.821 3 C -0.147 4.147 4 C -0.073 4.073 5 C -0.123 4.123 6 C -0.075 4.075 7 C -0.162 4.162 8 C 0.094 3.906 9 F -0.142 7.142 10 N -0.694 5.694 11 C 0.707 3.293 12 O -0.556 6.556 13 N -0.580 5.580 14 C 0.130 3.870 15 C 0.004 3.996 16 H 0.116 0.884 17 C 0.237 3.763 18 N -0.482 5.482 19 C 0.042 3.958 20 C -0.540 4.540 21 H 0.051 0.949 22 C 0.014 3.986 23 N -0.920 5.920 24 Si 0.950 3.050 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.283 1.283 28 C 0.515 3.485 29 O -0.470 6.470 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.149 0.851 37 H 0.456 0.544 38 H 0.136 0.864 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.009 0.991 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.735 26.223 -15.760 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.088 3.912 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.141 4.141 6 C -0.092 4.092 7 C -0.181 4.181 8 C 0.074 3.926 9 F -0.121 7.121 10 N -0.360 5.360 11 C 0.408 3.592 12 O -0.431 6.431 13 N -0.326 5.326 14 C 0.008 3.992 15 C -0.018 4.018 16 H 0.133 0.867 17 C -0.080 4.080 18 N -0.159 5.159 19 C 0.003 3.997 20 C -0.578 4.578 21 H 0.069 0.931 22 C -0.186 4.186 23 N -0.559 5.559 24 Si 0.776 3.224 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.209 1.209 28 C 0.301 3.699 29 O -0.338 6.338 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.133 0.867 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.184 0.816 36 H 0.167 0.833 37 H 0.305 0.695 38 H 0.154 0.846 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.702 26.264 -14.320 29.962 hybrid contribution -0.514 -1.472 0.474 1.630 sum -2.216 24.792 -13.846 28.482 Atomic orbital electron populations 1.22087 0.88530 1.04178 1.05690 1.19919 0.97590 0.89833 0.83865 1.19507 1.04700 0.92631 0.98095 1.21149 0.93966 0.97244 0.96765 1.21629 1.00003 0.92594 0.99896 1.21542 0.94448 1.01580 0.91653 1.21459 1.00755 0.93625 1.02226 1.17908 0.94678 0.94352 0.85672 1.91552 1.72563 1.90232 1.57745 1.45399 1.54019 1.27349 1.09255 1.15858 0.79727 0.82421 0.81240 1.91041 1.49166 1.41747 1.61121 1.46580 1.49464 1.28132 1.08390 1.21865 0.94886 0.85793 0.96635 1.19528 0.88944 0.96265 0.97085 0.86661 1.29459 0.93971 0.91306 0.93239 1.81034 1.12812 1.11270 1.10752 1.18961 0.95346 0.90283 0.95083 1.21473 0.99081 0.99693 1.37599 0.93064 1.25691 0.96349 1.01421 0.95116 1.70022 1.16620 1.30145 1.39155 0.85622 0.79230 0.79857 0.77737 1.19593 1.19570 1.20940 1.21269 0.77379 0.80826 0.90397 1.90856 1.56004 1.69196 1.17746 0.90760 0.91580 0.86743 0.82977 0.81675 0.81556 0.83328 0.69487 0.84626 0.88082 0.93784 0.97262 0.92545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.74 71.98 0.63 -2.20 16 2 C 0.18 3.77 1.03 2.24 0.00 3.77 16 3 C -0.15 -2.65 4.83 -19.82 -0.10 -2.75 16 4 C -0.07 -0.85 9.38 22.26 0.21 -0.64 16 5 C -0.12 -0.98 10.04 22.27 0.22 -0.75 16 6 C -0.07 -0.64 10.04 22.26 0.22 -0.42 16 7 C -0.16 -2.34 10.03 22.31 0.22 -2.11 16 8 C 0.09 1.94 6.83 22.38 0.15 2.09 16 9 F -0.14 -3.92 13.29 44.97 0.60 -3.32 16 10 N -0.69 -12.12 4.65 -443.24 -2.06 -14.18 16 11 C 0.71 18.44 8.62 179.44 1.55 19.99 16 12 O -0.56 -17.49 17.48 -3.86 -0.07 -17.56 16 13 N -0.58 -16.97 2.49 -773.12 -1.92 -18.90 16 14 C 0.13 4.13 5.13 86.38 0.44 4.57 16 15 C 0.00 0.17 2.42 -12.60 -0.03 0.14 16 16 H 0.12 4.34 8.14 -2.39 -0.02 4.33 16 17 C 0.24 10.43 12.37 89.43 1.11 11.54 16 18 N -0.48 -22.88 18.54 20.01 0.37 -22.50 16 19 C 0.04 2.00 4.42 29.84 0.13 2.13 16 20 C -0.54 -29.44 8.60 25.60 0.22 -29.22 16 21 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 22 C 0.01 0.76 5.46 84.65 0.46 1.22 16 23 N -0.92 -53.30 13.29 21.45 0.28 -53.02 16 24 Si 0.95 44.32 29.54 68.60 2.03 46.34 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 28 C 0.51 15.48 6.06 87.94 0.53 16.01 16 29 O -0.47 -17.45 15.13 -2.87 -0.04 -17.49 16 30 H 0.07 1.71 6.52 -2.39 -0.02 1.69 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.15 1.18 6.67 -2.91 -0.02 1.17 16 34 H 0.17 0.29 8.06 -2.91 -0.02 0.27 16 35 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.46 4.56 8.46 -92.71 -0.78 3.77 16 38 H 0.14 3.82 7.86 -2.38 -0.02 3.80 16 39 H 0.10 3.20 8.00 -2.38 -0.02 3.18 16 40 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -76.25 368.03 5.47 -70.78 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.30 Total: 6.48 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 5.98 Total: 23.36 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.33 Total: -108.60 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.11 Total: -35.04 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.60 Total: -3.32 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -76.25 5.47 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065976263.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.942 kcal (2) G-P(sol) polarization free energy of solvation -76.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds