Wall clock time and date at job start Wed Apr 1 2020 03:42:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50708 * 110.53498 * 2 1
4 4 C 1.38214 * 120.00753 * 117.17103 * 3 2 1
5 5 C 1.38224 * 120.02197 * 180.02562 * 4 3 2
6 6 C 1.38265 * 120.05408 * 359.97438 * 5 4 3
7 7 C 1.38183 * 120.02323 * 359.97438 * 6 5 4
8 8 C 1.38437 * 120.01160 * 297.44629 * 3 2 1
9 9 F 1.35099 * 120.02745 * 0.02562 * 8 3 2
10 10 N 1.47309 * 110.73156 * 122.92193 * 2 1 3
11 11 C 1.34519 * 106.61887 * 118.58775 * 10 2 1
12 12 O 1.21543 * 123.77036 * 179.97438 * 11 10 2
13 13 N 1.33793 * 112.46115 * 0.02562 * 11 10 2
14 14 C 1.46501 * 124.18031 * 180.02562 * 13 11 10
15 15 C 1.53007 * 109.46873 * 269.95861 * 14 13 11
16 16 H 1.08998 * 109.46855 * 55.00093 * 15 14 13
17 17 C 1.47197 * 109.47036 * 295.00115 * 15 14 13
18 18 N 4.63243 * 135.37187 * 266.81946 * 2 1 3
19 19 C 1.53002 * 109.46931 * 175.00179 * 15 14 13
20 20 C 1.50694 * 109.47009 * 185.00113 * 19 15 14
21 21 H 1.08006 * 120.00445 * 0.02562 * 20 19 15
22 22 C 1.37874 * 120.00137 * 179.97438 * 20 19 15
23 23 N 1.31512 * 119.99855 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00185 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.47044 * 90.00473 * 24 22 20
26 26 H 1.48501 * 109.46958 * 210.00383 * 24 22 20
27 27 H 1.48499 * 109.47346 * 330.00490 * 24 22 20
28 28 C 1.34772 * 111.64309 * 359.97438 * 13 11 10
29 29 O 1.21227 * 127.15841 * 180.02562 * 28 13 11
30 30 H 1.09007 * 109.46977 * 59.99524 * 1 2 3
31 31 H 1.08993 * 109.47235 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.46770 * 300.00157 * 1 2 3
33 33 H 1.08000 * 119.99525 * 0.03989 * 4 3 2
34 34 H 1.08004 * 119.97833 * 180.02562 * 5 4 3
35 35 H 1.07999 * 119.98941 * 180.02562 * 6 5 4
36 36 H 1.08002 * 120.01017 * 180.02562 * 7 6 5
37 37 H 0.96997 * 126.68734 * 298.56788 * 10 2 1
38 38 H 1.08993 * 109.47325 * 29.96039 * 14 13 11
39 39 H 1.09002 * 109.47205 * 149.96102 * 14 13 11
40 40 H 1.09004 * 109.46919 * 304.99843 * 19 15 14
41 41 H 1.08994 * 109.46998 * 64.99942 * 19 15 14
42 42 H 0.97000 * 120.00063 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0587 1.4113 0.0000
4 6 2.8130 1.8669 1.0648
5 6 3.2976 3.1614 1.0654
6 6 3.0289 4.0018 0.0008
7 6 2.2759 3.5482 -1.0653
8 6 1.7842 2.2536 -1.0638
9 9 1.0419 1.8111 -2.1023
10 7 2.0515 -0.7488 1.1565
11 6 2.7646 -1.7758 0.6601
12 8 3.3364 -2.5970 1.3498
13 7 2.7748 -1.7916 -0.6777
14 6 3.4720 -2.7969 -1.4836
15 6 4.8995 -2.3240 -1.7657
16 1 5.4001 -2.0982 -0.8241
17 6 4.8591 -1.1136 -2.6024
18 7 4.8269 -0.1806 -3.2493
19 6 5.6663 -3.4260 -2.4995
20 6 7.1048 -3.0101 -2.6685
21 1 7.4389 -2.0553 -2.2900
22 6 7.9946 -3.8487 -3.3055
23 7 7.5879 -5.0115 -3.7660
24 14 9.7777 -3.3328 -3.5156
25 1 10.5670 -3.7917 -2.3445
26 1 10.3271 -3.9433 -4.7528
27 1 9.8563 -1.8533 -3.6165
28 6 2.0636 -0.7690 -1.1924
29 8 1.8871 -0.5168 -2.3649
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 3.0241 1.2112 1.8966
34 1 3.8873 3.5166 1.8976
35 1 3.4083 5.0130 0.0021
36 1 2.0664 4.2047 -1.8969
37 1 1.9088 -0.5415 2.0932
38 1 3.5028 -3.7410 -0.9398
39 1 2.9430 -2.9376 -2.4262
40 1 5.6203 -4.3482 -1.9201
41 1 5.2179 -3.5899 -3.4794
42 1 8.2139 -5.6014 -4.2144
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068352574.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:42:54
Heat of formation + Delta-G solvation = -30.392722 kcal
Electronic energy + Delta-G solvation = -30813.783565 eV
Core-core repulsion = 26481.636936 eV
Total energy + Delta-G solvation = -4332.146628 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.128 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.01273 -42.70416 -39.35660 -38.56649 -37.08588 -36.33503 -35.02019 -33.63705
-32.20982 -31.42941 -30.98130 -29.69053 -27.60394 -25.31970 -24.21699 -23.46296
-22.94031 -21.86137 -21.53628 -20.45353 -18.36015 -17.77588 -17.19352 -17.09319
-16.57064 -16.45709 -16.16686 -15.70146 -15.62985 -15.41468 -15.24392 -14.66381
-14.50498 -14.21381 -14.09577 -13.95833 -13.54786 -13.22682 -13.04031 -12.82713
-12.77338 -12.53721 -12.47102 -12.11463 -12.00969 -11.75610 -11.49737 -11.38400
-11.10881 -10.94268 -10.87000 -10.59967 -10.35863 -10.28309 -9.95221 -9.80805
-9.48713 -9.33081 -9.18016 -8.93954 -8.45445 -6.09668 -4.12853 0.71599
0.88208 1.60181 2.14109 2.86279 2.97886 3.24546 3.30160 3.36699
3.41432 3.62515 3.66790 3.73677 3.89833 4.02331 4.37292 4.41106
4.47963 4.65887 4.68833 4.91670 5.00041 5.04944 5.15674 5.22479
5.28574 5.37218 5.42820 5.46011 5.56529 5.62462 5.71172 5.77604
5.86595 5.93467 6.04789 6.25421 6.41620 6.52670 6.57823 6.99907
7.36189 7.39113 7.48073 7.84527 8.05173 8.21033 8.43837 8.90394
9.52435 11.01294
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.013376 B = 0.003542 C = 0.003269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2092.830098 B = 7902.331674 C = 8564.385962
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.169 3.831
3 C -0.136 4.136
4 C -0.072 4.072
5 C -0.131 4.131
6 C -0.081 4.081
7 C -0.154 4.154
8 C 0.129 3.871
9 F -0.118 7.118
10 N -0.722 5.722
11 C 0.705 3.295
12 O -0.530 6.530
13 N -0.575 5.575
14 C 0.124 3.876
15 C -0.007 4.007
16 H 0.107 0.893
17 C 0.228 3.772
18 N -0.451 5.451
19 C 0.035 3.965
20 C -0.526 4.526
21 H 0.056 0.944
22 C 0.064 3.936
23 N -0.890 5.890
24 Si 0.892 3.108
25 H -0.278 1.278
26 H -0.285 1.285
27 H -0.274 1.274
28 C 0.524 3.476
29 O -0.433 6.433
30 H 0.088 0.912
31 H 0.075 0.925
32 H 0.080 0.920
33 H 0.135 0.865
34 H 0.133 0.867
35 H 0.135 0.865
36 H 0.139 0.861
37 H 0.438 0.562
38 H 0.118 0.882
39 H 0.101 0.899
40 H 0.044 0.956
41 H 0.030 0.970
42 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.545 13.929 13.307 25.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.077 3.923
3 C -0.139 4.139
4 C -0.090 4.090
5 C -0.150 4.150
6 C -0.099 4.099
7 C -0.173 4.173
8 C 0.109 3.891
9 F -0.096 7.096
10 N -0.387 5.387
11 C 0.406 3.594
12 O -0.402 6.402
13 N -0.322 5.322
14 C 0.003 3.997
15 C -0.029 4.029
16 H 0.124 0.876
17 C -0.090 4.090
18 N -0.127 5.127
19 C -0.004 4.004
20 C -0.564 4.564
21 H 0.074 0.926
22 C -0.138 4.138
23 N -0.529 5.529
24 Si 0.720 3.280
25 H -0.204 1.204
26 H -0.211 1.211
27 H -0.199 1.199
28 C 0.308 3.692
29 O -0.298 6.298
30 H 0.107 0.893
31 H 0.094 0.906
32 H 0.099 0.901
33 H 0.153 0.847
34 H 0.151 0.849
35 H 0.153 0.847
36 H 0.157 0.843
37 H 0.283 0.717
38 H 0.136 0.864
39 H 0.120 0.880
40 H 0.062 0.938
41 H 0.048 0.952
42 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -16.307 14.752 11.811 24.960
hybrid contribution 1.028 -0.082 0.270 1.066
sum -15.279 14.670 12.081 24.384
Atomic orbital electron populations
1.22045 0.89311 1.04266 1.04814 1.20026 0.97041 0.89525 0.85692
1.19526 1.03884 0.93751 0.96708 1.20853 0.95012 0.96006 0.97162
1.21196 1.00742 0.93632 0.99387 1.21119 0.96008 1.00203 0.92600
1.21201 1.00675 0.94575 1.00818 1.17456 0.93935 0.92858 0.84866
1.91597 1.73231 1.89424 1.55374 1.45590 1.55600 1.28981 1.08567
1.15845 0.79480 0.82158 0.81897 1.91050 1.47455 1.40906 1.60838
1.46562 1.48926 1.28908 1.07773 1.22045 0.91583 0.90284 0.95813
1.19614 0.95412 0.90037 0.97887 0.87564 1.28996 0.92415 0.93860
0.93692 1.81005 1.09144 1.12625 1.09976 1.19160 0.94335 0.91190
0.95672 1.21067 0.93648 1.03611 1.38079 0.92566 1.24928 0.98913
0.94841 0.95140 1.69930 1.35283 1.09320 1.38330 0.86578 0.84851
0.78884 0.77706 1.20401 1.21089 1.19906 1.20566 0.78115 0.80729
0.89757 1.90883 1.55419 1.67618 1.15917 0.89340 0.90599 0.90128
0.84740 0.84872 0.84725 0.84268 0.71720 0.86391 0.88046 0.93814
0.95195 0.92725
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 8.80 37.16 0.33 -0.89 16
2 C 0.17 1.85 1.03 -133.24 -0.14 1.71 16
3 C -0.14 -1.52 4.82 -104.55 -0.50 -2.02 16
4 C -0.07 -0.66 9.37 -39.60 -0.37 -1.03 16
5 C -0.13 -1.07 10.04 -39.58 -0.40 -1.47 16
6 C -0.08 -0.68 10.04 -39.59 -0.40 -1.08 16
7 C -0.15 -1.58 10.03 -39.51 -0.40 -1.97 16
8 C 0.13 1.58 6.82 -39.42 -0.27 1.31 16
9 F -0.12 -1.67 13.22 2.25 0.03 -1.64 16
10 N -0.72 -7.03 4.71 -54.02 -0.25 -7.28 16
11 C 0.71 9.68 8.62 -88.03 -0.76 8.92 16
12 O -0.53 -8.73 17.48 5.33 0.09 -8.64 16
13 N -0.58 -8.53 2.49 -120.73 -0.30 -8.83 16
14 C 0.12 1.97 5.13 -4.04 -0.02 1.95 16
15 C -0.01 -0.14 2.42 -93.40 -0.23 -0.36 16
16 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16
17 C 0.23 4.99 12.37 -20.77 -0.26 4.73 16
18 N -0.45 -10.61 18.54 42.15 0.78 -9.83 16
19 C 0.04 0.82 4.42 -27.88 -0.12 0.70 16
20 C -0.53 -14.24 8.60 -34.44 -0.30 -14.54 16
21 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16
22 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16
23 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16
24 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16
25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
27 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16
28 C 0.52 7.81 6.04 -10.55 -0.06 7.75 16
29 O -0.43 -7.72 14.95 5.60 0.08 -7.64 16
30 H 0.09 0.82 6.61 -51.93 -0.34 0.47 16
31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
33 H 0.13 0.98 6.62 -52.49 -0.35 0.63 16
34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16
35 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16
36 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16
37 H 0.44 2.84 8.37 -40.82 -0.34 2.50 16
38 H 0.12 1.69 7.86 -51.93 -0.41 1.28 16
39 H 0.10 1.56 8.00 -51.93 -0.42 1.15 16
40 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16
41 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16
42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16
LS Contribution 367.81 15.07 5.54 5.54
Total: -1.00 -34.80 367.81 -7.07 -41.87
By element:
Atomic # 1 Polarization: 4.15 SS G_CDS: -4.77 Total: -0.62 kcal
Atomic # 6 Polarization: 9.38 SS G_CDS: -3.99 Total: 5.39 kcal
Atomic # 7 Polarization: -51.79 SS G_CDS: 0.96 Total: -50.83 kcal
Atomic # 8 Polarization: -16.46 SS G_CDS: 0.18 Total: -16.28 kcal
Atomic # 9 Polarization: -1.67 SS G_CDS: 0.03 Total: -1.64 kcal
Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal
Total LS contribution 5.54 Total: 5.54 kcal
Total: -34.80 -7.07 -41.87 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068352574.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.479 kcal
(2) G-P(sol) polarization free energy of solvation -34.802 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.323 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.872 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.393 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds