Wall clock time and date at job start Wed Apr 1 2020 03:42:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.50708 * 110.53498 * 2 1
4 4 C 1.38214 * 120.00753 * 117.17103 * 3 2 1
5 5 C 1.38224 * 120.02197 * 180.02562 * 4 3 2
6 6 C 1.38265 * 120.05408 * 359.97438 * 5 4 3
7 7 C 1.38183 * 120.02323 * 359.97438 * 6 5 4
8 8 C 1.38437 * 120.01160 * 297.44629 * 3 2 1
9 9 F 1.35099 * 120.02745 * 0.02562 * 8 3 2
10 10 N 1.47309 * 110.73156 * 122.92193 * 2 1 3
11 11 C 1.34519 * 106.61887 * 118.58775 * 10 2 1
12 12 O 1.21543 * 123.77036 * 179.97438 * 11 10 2
13 13 N 1.33793 * 112.46115 * 0.02562 * 11 10 2
14 14 C 1.46501 * 124.18031 * 180.02562 * 13 11 10
15 15 C 1.53007 * 109.46873 * 269.95861 * 14 13 11
16 16 H 1.08998 * 109.46855 * 55.00093 * 15 14 13
17 17 C 1.47197 * 109.47036 * 295.00115 * 15 14 13
18 18 N 4.63243 * 135.37187 * 266.81946 * 2 1 3
19 19 C 1.53002 * 109.46931 * 175.00179 * 15 14 13
20 20 C 1.50694 * 109.47009 * 185.00113 * 19 15 14
21 21 H 1.08006 * 120.00445 * 0.02562 * 20 19 15
22 22 C 1.37874 * 120.00137 * 179.97438 * 20 19 15
23 23 N 1.31512 * 119.99855 * 0.02562 * 22 20 19
24 24 Si 1.86804 * 120.00185 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.47044 * 90.00473 * 24 22 20
26 26 H 1.48501 * 109.46958 * 210.00383 * 24 22 20
27 27 H 1.48499 * 109.47346 * 330.00490 * 24 22 20
28 28 C 1.34772 * 111.64309 * 359.97438 * 13 11 10
29 29 O 1.21227 * 127.15841 * 180.02562 * 28 13 11
30 30 H 1.09007 * 109.46977 * 59.99524 * 1 2 3
31 31 H 1.08993 * 109.47235 * 179.97438 * 1 2 3
32 32 H 1.08997 * 109.46770 * 300.00157 * 1 2 3
33 33 H 1.08000 * 119.99525 * 0.03989 * 4 3 2
34 34 H 1.08004 * 119.97833 * 180.02562 * 5 4 3
35 35 H 1.07999 * 119.98941 * 180.02562 * 6 5 4
36 36 H 1.08002 * 120.01017 * 180.02562 * 7 6 5
37 37 H 0.96997 * 126.68734 * 298.56788 * 10 2 1
38 38 H 1.08993 * 109.47325 * 29.96039 * 14 13 11
39 39 H 1.09002 * 109.47205 * 149.96102 * 14 13 11
40 40 H 1.09004 * 109.46919 * 304.99843 * 19 15 14
41 41 H 1.08994 * 109.46998 * 64.99942 * 19 15 14
42 42 H 0.97000 * 120.00063 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0587 1.4113 0.0000
4 6 2.8130 1.8669 1.0648
5 6 3.2976 3.1614 1.0654
6 6 3.0289 4.0018 0.0008
7 6 2.2759 3.5482 -1.0653
8 6 1.7842 2.2536 -1.0638
9 9 1.0419 1.8111 -2.1023
10 7 2.0515 -0.7488 1.1565
11 6 2.7646 -1.7758 0.6601
12 8 3.3364 -2.5970 1.3498
13 7 2.7748 -1.7916 -0.6777
14 6 3.4720 -2.7969 -1.4836
15 6 4.8995 -2.3240 -1.7657
16 1 5.4001 -2.0982 -0.8241
17 6 4.8591 -1.1136 -2.6024
18 7 4.8269 -0.1806 -3.2493
19 6 5.6663 -3.4260 -2.4995
20 6 7.1048 -3.0101 -2.6685
21 1 7.4389 -2.0553 -2.2900
22 6 7.9946 -3.8487 -3.3055
23 7 7.5879 -5.0115 -3.7660
24 14 9.7777 -3.3328 -3.5156
25 1 10.5670 -3.7917 -2.3445
26 1 10.3271 -3.9433 -4.7528
27 1 9.8563 -1.8533 -3.6165
28 6 2.0636 -0.7690 -1.1924
29 8 1.8871 -0.5168 -2.3649
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3633 -1.0276 -0.0005
32 1 -0.3633 0.5139 0.8900
33 1 3.0241 1.2112 1.8966
34 1 3.8873 3.5166 1.8976
35 1 3.4083 5.0130 0.0021
36 1 2.0664 4.2047 -1.8969
37 1 1.9088 -0.5415 2.0932
38 1 3.5028 -3.7410 -0.9398
39 1 2.9430 -2.9376 -2.4262
40 1 5.6203 -4.3482 -1.9201
41 1 5.2179 -3.5899 -3.4794
42 1 8.2139 -5.6014 -4.2144
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000068352574.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:42:53
Heat of formation + Delta-G solvation = -51.889534 kcal
Electronic energy + Delta-G solvation = -30814.715736 eV
Core-core repulsion = 26481.636936 eV
Total energy + Delta-G solvation = -4333.078800 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.128 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-49.93425 -43.77433 -40.16582 -39.73416 -38.57739 -37.48266 -36.43550 -35.46372
-33.72157 -32.59994 -31.70536 -30.41561 -29.27312 -26.59434 -25.53375 -24.37475
-23.82220 -23.69009 -22.50814 -21.47815 -19.34638 -18.79392 -18.70061 -18.33597
-18.02787 -17.47418 -17.36434 -16.86445 -16.66156 -16.46825 -16.43558 -16.24239
-15.43307 -15.34243 -15.26062 -14.96768 -14.92125 -14.51239 -14.36285 -14.05007
-13.96002 -13.60992 -13.52514 -13.43246 -13.20925 -13.15654 -12.98018 -12.70533
-12.66109 -12.55971 -12.19693 -12.14511 -12.02283 -11.63052 -11.41964 -11.36137
-10.87746 -10.65286 -10.57206 -10.07055 -9.71586 -8.21972 -6.30626 -0.04151
0.15277 0.50001 1.07202 1.39032 1.40440 1.49822 1.77350 1.87106
1.93321 1.96953 2.39849 2.49494 2.78098 3.03447 3.09719 3.14929
3.25874 3.59022 3.77329 3.87216 3.89671 4.05120 4.12570 4.29524
4.31075 4.31396 4.49117 4.53911 4.61868 4.71642 4.75771 4.79748
4.97653 5.00267 5.09083 5.24148 5.36917 5.39403 5.52674 5.73278
5.74778 5.82927 5.92255 6.13830 6.26135 6.66269 6.81106 7.03336
7.37668 8.89041
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.013376 B = 0.003542 C = 0.003269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2092.830098 B = 7902.331674 C = 8564.385962
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.179 3.821
3 C -0.150 4.150
4 C -0.076 4.076
5 C -0.127 4.127
6 C -0.079 4.079
7 C -0.167 4.167
8 C 0.095 3.905
9 F -0.138 7.138
10 N -0.694 5.694
11 C 0.706 3.294
12 O -0.557 6.557
13 N -0.580 5.580
14 C 0.129 3.871
15 C 0.005 3.995
16 H 0.114 0.886
17 C 0.237 3.763
18 N -0.482 5.482
19 C 0.042 3.958
20 C -0.542 4.542
21 H 0.050 0.950
22 C 0.015 3.985
23 N -0.920 5.920
24 Si 0.950 3.050
25 H -0.265 1.265
26 H -0.282 1.282
27 H -0.278 1.278
28 C 0.514 3.486
29 O -0.469 6.469
30 H 0.076 0.924
31 H 0.081 0.919
32 H 0.111 0.889
33 H 0.155 0.845
34 H 0.164 0.836
35 H 0.164 0.836
36 H 0.146 0.854
37 H 0.456 0.544
38 H 0.136 0.864
39 H 0.103 0.897
40 H 0.044 0.956
41 H 0.009 0.991
42 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.372 15.213 15.749 27.341
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.087 3.913
3 C -0.152 4.152
4 C -0.094 4.094
5 C -0.145 4.145
6 C -0.097 4.097
7 C -0.186 4.186
8 C 0.076 3.924
9 F -0.117 7.117
10 N -0.360 5.360
11 C 0.407 3.593
12 O -0.432 6.432
13 N -0.326 5.326
14 C 0.008 3.992
15 C -0.018 4.018
16 H 0.132 0.868
17 C -0.080 4.080
18 N -0.159 5.159
19 C 0.003 3.997
20 C -0.580 4.580
21 H 0.069 0.931
22 C -0.184 4.184
23 N -0.559 5.559
24 Si 0.775 3.225
25 H -0.190 1.190
26 H -0.207 1.207
27 H -0.203 1.203
28 C 0.301 3.699
29 O -0.337 6.337
30 H 0.095 0.905
31 H 0.100 0.900
32 H 0.129 0.871
33 H 0.172 0.828
34 H 0.182 0.818
35 H 0.182 0.818
36 H 0.164 0.836
37 H 0.305 0.695
38 H 0.154 0.846
39 H 0.121 0.879
40 H 0.062 0.938
41 H 0.027 0.973
42 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -16.159 16.068 14.302 26.904
hybrid contribution 0.978 -0.409 -0.482 1.165
sum -15.181 15.659 13.820 25.820
Atomic orbital electron populations
1.22079 0.87151 1.04997 1.05767 1.19997 0.98444 0.89034 0.83816
1.19603 1.04924 0.93384 0.97303 1.21169 0.94248 0.96962 0.97040
1.21630 0.99896 0.93027 0.99961 1.21522 0.94795 1.01604 0.91744
1.21467 1.01052 0.94122 1.01948 1.17860 0.95282 0.94140 0.85146
1.91542 1.73958 1.89773 1.56402 1.45404 1.54063 1.27282 1.09262
1.15863 0.79572 0.82581 0.81244 1.91040 1.48827 1.42158 1.61142
1.46580 1.48796 1.28817 1.08378 1.21875 0.89456 0.91196 0.96715
1.19526 0.97475 0.87813 0.96968 0.86843 1.29440 0.91419 0.93905
0.93267 1.80995 1.10338 1.13713 1.10824 1.18960 0.93187 0.92433
0.95076 1.21436 0.95459 1.03314 1.37766 0.93141 1.25678 1.02753
0.94952 0.95054 1.70018 1.36589 1.10209 1.39123 0.85678 0.80566
0.78136 0.78102 1.19028 1.20716 1.20261 1.21279 0.77555 0.80674
0.90409 1.90860 1.56671 1.68446 1.17741 0.90515 0.89961 0.87053
0.82764 0.81799 0.81838 0.83634 0.69498 0.84598 0.87914 0.93792
0.97260 0.92538
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.14 8.80 71.98 0.63 -1.51 16
2 C 0.18 3.66 1.03 2.24 0.00 3.66 16
3 C -0.15 -3.13 4.82 -19.82 -0.10 -3.23 16
4 C -0.08 -1.19 9.37 22.26 0.21 -0.98 16
5 C -0.13 -1.65 10.04 22.27 0.22 -1.42 16
6 C -0.08 -1.12 10.04 22.26 0.22 -0.89 16
7 C -0.17 -3.29 10.03 22.31 0.22 -3.07 16
8 C 0.10 2.33 6.82 22.38 0.15 2.48 16
9 F -0.14 -4.07 13.22 44.97 0.59 -3.47 16
10 N -0.69 -11.86 4.71 -443.24 -2.09 -13.95 16
11 C 0.71 18.26 8.62 179.44 1.55 19.81 16
12 O -0.56 -17.45 17.48 -3.85 -0.07 -17.52 16
13 N -0.58 -16.80 2.49 -773.12 -1.92 -18.72 16
14 C 0.13 4.08 5.13 86.38 0.44 4.53 16
15 C 0.00 0.18 2.42 -12.60 -0.03 0.15 16
16 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16
17 C 0.24 10.47 12.37 89.44 1.11 11.57 16
18 N -0.48 -23.03 18.54 20.00 0.37 -22.66 16
19 C 0.04 2.01 4.42 29.85 0.13 2.14 16
20 C -0.54 -29.48 8.60 25.60 0.22 -29.26 16
21 H 0.05 2.75 7.59 -2.91 -0.02 2.72 16
22 C 0.02 0.84 5.46 84.65 0.46 1.30 16
23 N -0.92 -53.22 13.29 21.45 0.28 -52.93 16
24 Si 0.95 44.10 29.54 68.60 2.03 46.12 16
25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16
27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
28 C 0.51 15.24 6.04 87.94 0.53 15.77 16
29 O -0.47 -17.22 14.95 -2.87 -0.04 -17.26 16
30 H 0.08 1.40 6.61 -2.38 -0.02 1.38 16
31 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16
32 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16
33 H 0.15 1.68 6.62 -2.91 -0.02 1.66 16
34 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16
35 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16
36 H 0.15 2.50 8.06 -2.91 -0.02 2.47 16
37 H 0.46 4.40 8.37 -92.71 -0.78 3.63 16
38 H 0.14 3.80 7.86 -2.39 -0.02 3.78 16
39 H 0.10 3.21 8.00 -2.39 -0.02 3.19 16
40 H 0.04 2.09 8.14 -2.38 -0.02 2.07 16
41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16
42 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16
Total: -1.00 -76.28 367.81 5.45 -70.83
By element:
Atomic # 1 Polarization: 8.18 SS G_CDS: 0.31 Total: 8.49 kcal
Atomic # 6 Polarization: 15.09 SS G_CDS: 5.98 Total: 21.07 kcal
Atomic # 7 Polarization: -104.91 SS G_CDS: -3.36 Total: -108.27 kcal
Atomic # 8 Polarization: -34.67 SS G_CDS: -0.11 Total: -34.78 kcal
Atomic # 9 Polarization: -4.07 SS G_CDS: 0.59 Total: -3.47 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal
Total: -76.28 5.45 -70.83 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068352574.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.944 kcal
(2) G-P(sol) polarization free energy of solvation -76.284 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.451 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.833 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds