Wall clock time and date at job start Wed Apr 1 2020 03:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.89762 * 2 1 4 4 N 1.40090 * 108.20091 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03471 * 180.02562 * 4 3 2 6 6 C 1.34946 * 107.92884 * 0.26400 * 4 3 2 7 7 C 1.35320 * 107.74166 * 359.57586 * 6 4 3 8 8 C 1.50705 * 126.03524 * 180.15732 * 7 6 4 9 9 H 1.09001 * 109.46601 * 145.31053 * 8 7 6 10 10 C 1.52998 * 109.47099 * 265.30904 * 8 7 6 11 11 N 1.46498 * 109.46901 * 25.31327 * 8 7 6 12 12 C 1.34780 * 119.99760 * 155.00019 * 11 8 7 13 13 O 1.21616 * 120.00046 * 359.97438 * 12 11 8 14 14 C 1.47423 * 120.00095 * 179.97438 * 12 11 8 15 15 C 1.39678 * 120.21487 * 359.97438 * 14 12 11 16 16 C 1.37806 * 119.93895 * 180.02562 * 15 14 12 17 17 C 1.38655 * 120.38236 * 0.02562 * 16 15 14 18 18 C 1.37909 * 120.44026 * 359.97180 * 17 16 15 19 19 C 1.39120 * 120.04911 * 359.72819 * 18 17 16 20 20 S 1.76197 * 120.19337 * 180.27590 * 19 18 17 21 21 C 1.76202 * 99.99844 * 6.86069 * 20 19 18 22 22 H 1.07998 * 120.00109 * 5.66798 * 21 20 19 23 23 C 1.38802 * 119.99926 * 185.65685 * 21 20 19 24 24 N 1.31556 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46699 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47072 * 120.00260 * 25 23 21 28 28 H 1.48497 * 109.47262 * 240.00467 * 25 23 21 29 29 H 1.08997 * 109.47293 * 89.97478 * 1 2 3 30 30 H 1.09003 * 109.47215 * 209.97135 * 1 2 3 31 31 H 1.08998 * 109.47094 * 329.97470 * 1 2 3 32 32 H 1.09005 * 109.46978 * 90.02578 * 5 4 3 33 33 H 1.09003 * 109.47269 * 330.02801 * 5 4 3 34 34 H 1.08995 * 109.47217 * 210.02327 * 5 4 3 35 35 H 1.07997 * 126.13043 * 179.73291 * 6 4 3 36 36 H 1.09001 * 109.47272 * 60.00560 * 10 8 7 37 37 H 1.09006 * 109.46556 * 180.02562 * 10 8 7 38 38 H 1.09004 * 109.47278 * 300.00200 * 10 8 7 39 39 H 0.96996 * 120.00386 * 334.99748 * 11 8 7 40 40 H 1.08004 * 120.02935 * 0.02630 * 15 14 12 41 41 H 1.07996 * 119.81007 * 179.97438 * 16 15 14 42 42 H 1.08006 * 119.78282 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.98126 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 3.6142 -0.7155 -0.0069 7 6 2.3271 -1.1331 -0.0006 8 6 1.8599 -2.5659 -0.0009 9 1 0.9471 -2.6504 0.5889 10 6 1.5817 -3.0113 -1.4379 11 7 2.8988 -3.4183 0.5822 12 6 2.5656 -4.5951 1.1485 13 8 1.4024 -4.9490 1.1758 14 6 3.6111 -5.4533 1.7348 15 6 4.9485 -5.0515 1.7055 16 6 5.9213 -5.8584 2.2548 17 6 5.5810 -7.0697 2.8375 18 6 4.2654 -7.4817 2.8751 19 6 3.2680 -6.6786 2.3316 20 16 1.5851 -7.1980 2.3841 21 6 1.7411 -8.6398 3.3848 22 1 2.6926 -8.8863 3.8323 23 6 0.6409 -9.4588 3.5983 24 7 -0.5181 -9.1588 3.0530 25 14 0.8060 -10.9870 4.6597 26 1 2.2025 -11.0990 5.1523 27 1 -0.1200 -10.8887 5.8165 28 1 0.4668 -12.1879 3.8548 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.0834 1.7145 1.0275 33 1 4.5562 2.4337 -0.5130 34 1 5.6091 0.9986 -0.5150 35 1 4.4891 -1.3487 -0.0130 36 1 2.4945 -2.9267 -2.0277 37 1 1.2433 -4.0475 -1.4380 38 1 0.8087 -2.3769 -1.8718 39 1 3.8265 -3.1359 0.5607 40 1 5.2200 -4.1093 1.2527 41 1 6.9547 -5.5459 2.2306 42 1 6.3512 -7.6947 3.2647 43 1 4.0086 -8.4264 3.3312 44 1 -1.2868 -9.7314 3.2018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075559825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:47 Heat of formation + Delta-G solvation = 69.241239 kcal Electronic energy + Delta-G solvation = -26963.880318 eV Core-core repulsion = 23202.267318 eV Total energy + Delta-G solvation = -3761.613000 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53103 -39.46436 -37.54568 -35.50013 -33.94003 -32.74323 -31.60560 -30.27055 -30.19220 -29.76033 -28.71101 -25.81639 -25.71706 -23.83923 -22.58166 -21.89912 -20.96118 -19.78624 -19.50121 -18.28508 -17.37428 -16.56016 -15.87605 -15.77977 -15.61887 -15.13197 -14.61424 -14.49831 -14.39391 -13.91285 -13.80221 -13.71960 -13.47252 -13.35759 -12.99651 -12.89595 -12.78737 -12.55843 -12.27860 -12.19290 -11.87455 -11.84767 -11.58773 -11.24087 -11.20930 -11.08963 -10.90502 -10.67998 -10.31600 -9.78753 -9.61550 -9.49964 -9.37996 -8.84746 -8.72533 -8.45424 -8.31931 -8.03819 -6.52178 -6.45221 -4.15496 1.54653 1.67983 2.02002 2.29418 2.55948 3.11430 3.12645 3.21098 3.43065 3.54433 3.56208 4.07394 4.23576 4.50363 4.53737 4.78086 4.83544 4.95080 4.95874 5.07438 5.13882 5.17994 5.32006 5.39204 5.41721 5.48923 5.56685 5.59860 5.66991 5.76885 5.82825 5.90619 5.95938 6.11519 6.23868 6.34457 6.39415 6.51893 6.59998 6.78136 6.83353 6.88426 7.04288 7.14020 7.45724 7.54639 7.59708 7.94123 8.17519 8.83164 9.01220 10.57986 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.002805 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.438799 B = 9980.912775 C =11353.015740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.088 3.912 3 N -0.297 5.297 4 N -0.377 5.377 5 C 0.103 3.897 6 C 0.059 3.941 7 C -0.233 4.233 8 C 0.225 3.775 9 H 0.095 0.905 10 C -0.155 4.155 11 N -0.733 5.733 12 C 0.554 3.446 13 O -0.507 6.507 14 C -0.177 4.177 15 C -0.061 4.061 16 C -0.188 4.188 17 C -0.077 4.077 18 C -0.153 4.153 19 C -0.057 4.057 20 S 0.187 5.813 21 C -0.596 4.596 22 H 0.091 0.909 23 C 0.083 3.917 24 N -0.857 5.857 25 Si 0.919 3.081 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.277 1.277 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.170 0.830 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.389 0.611 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.139 0.861 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.668 17.051 -7.138 21.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 N -0.120 5.120 4 N -0.159 5.159 5 C -0.038 4.038 6 C -0.087 4.087 7 C -0.245 4.245 8 C 0.119 3.881 9 H 0.113 0.887 10 C -0.214 4.214 11 N -0.387 5.387 12 C 0.344 3.656 13 O -0.384 6.384 14 C -0.192 4.192 15 C -0.082 4.082 16 C -0.212 4.212 17 C -0.099 4.099 18 C -0.178 4.178 19 C -0.177 4.177 20 S 0.452 5.548 21 C -0.742 4.742 22 H 0.109 0.891 23 C -0.128 4.128 24 N -0.490 5.490 25 Si 0.744 3.256 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.202 1.202 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.224 0.776 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.156 0.844 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.391 18.406 -7.584 21.603 hybrid contribution 2.122 -2.161 1.203 3.258 sum 10.513 16.245 -6.381 20.375 Atomic orbital electron populations 1.20254 0.86455 1.03736 1.03162 1.22183 0.96978 0.89776 0.98921 1.77307 0.86318 1.22606 1.25804 1.48298 1.05554 1.04588 1.57453 1.21842 0.83620 0.94964 1.03391 1.22126 0.99072 0.84922 1.02573 1.20096 0.92131 0.95942 1.16348 1.18965 0.91700 0.82940 0.94486 0.88667 1.22146 1.01419 1.02316 0.95478 1.45920 1.10058 1.20896 1.61794 1.18281 0.88737 0.80697 0.77933 1.90782 1.19403 1.71505 1.56730 1.19121 0.92967 0.96735 1.10367 1.20854 0.92007 0.97815 0.97479 1.20612 0.98229 0.96726 1.05665 1.21075 0.95898 0.95725 0.97247 1.21443 0.92057 1.01230 1.03093 1.23097 1.03327 0.94922 0.96315 1.84762 0.94339 1.22368 1.53360 1.24104 1.00299 1.13631 1.36204 0.89134 1.25094 0.94268 0.98106 0.95287 1.69984 1.00558 1.37758 1.40696 0.86110 0.78835 0.81017 0.79637 1.19177 1.20241 1.20238 0.90314 0.89857 0.90881 0.90752 0.89390 0.89485 0.81278 0.92943 0.91398 0.91970 0.77577 0.87451 0.87177 0.87073 0.84383 0.91586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.26 36.01 0.37 -0.38 16 2 C 0.09 1.07 7.22 -82.41 -0.59 0.47 16 3 N -0.30 -3.75 12.58 33.67 0.42 -3.33 16 4 N -0.38 -3.83 4.01 -68.16 -0.27 -4.10 16 5 C 0.10 0.58 11.47 59.85 0.69 1.27 16 6 C 0.06 0.59 10.66 -17.22 -0.18 0.41 16 7 C -0.23 -2.76 5.22 -105.05 -0.55 -3.31 16 8 C 0.22 2.96 2.81 -69.08 -0.19 2.77 16 9 H 0.10 1.44 6.85 -51.93 -0.36 1.08 16 10 C -0.15 -1.91 9.47 37.16 0.35 -1.56 16 11 N -0.73 -10.33 4.99 -56.01 -0.28 -10.61 16 12 C 0.55 10.52 7.71 -12.52 -0.10 10.42 16 13 O -0.51 -11.57 13.43 5.26 0.07 -11.50 16 14 C -0.18 -3.43 5.89 -104.75 -0.62 -4.05 16 15 C -0.06 -0.95 9.53 -39.20 -0.37 -1.32 16 16 C -0.19 -2.82 10.02 -39.59 -0.40 -3.22 16 17 C -0.08 -1.30 10.02 -39.55 -0.40 -1.70 16 18 C -0.15 -3.17 9.22 -39.37 -0.36 -3.54 16 19 C -0.06 -1.28 6.15 -38.39 -0.24 -1.52 16 20 S 0.19 4.97 18.56 -107.50 -2.00 2.98 16 21 C -0.60 -16.34 9.00 30.94 0.28 -16.07 16 22 H 0.09 2.36 4.98 -52.49 -0.26 2.10 16 23 C 0.08 2.28 5.49 -17.46 -0.10 2.18 16 24 N -0.86 -24.60 13.22 55.49 0.73 -23.87 16 25 Si 0.92 20.63 29.55 -169.99 -5.02 15.60 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.80 7.37 -51.93 -0.38 0.41 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.17 1.16 7.06 -52.49 -0.37 0.79 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.39 4.35 5.03 -40.82 -0.21 4.14 16 40 H 0.11 1.21 6.40 -52.48 -0.34 0.88 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 43 H 0.14 2.99 5.03 -52.49 -0.26 2.73 16 44 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 380.11 15.07 5.73 5.73 Total: -1.00 -34.24 380.11 -8.57 -42.80 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.54 Total: 5.43 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.41 Total: -19.13 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.60 Total: -41.91 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.07 Total: -11.50 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 4.97 SS G_CDS: -2.00 Total: 2.98 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.24 -8.57 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075559825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.046 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds