Wall clock time and date at job start Wed Apr 1 2020 03:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.89762 * 2 1 4 4 N 1.40090 * 108.20091 * 180.02562 * 3 2 1 5 5 C 1.46503 * 126.03471 * 180.02562 * 4 3 2 6 6 C 1.34946 * 107.92884 * 0.26400 * 4 3 2 7 7 C 1.35320 * 107.74166 * 359.57586 * 6 4 3 8 8 C 1.50705 * 126.03524 * 180.15732 * 7 6 4 9 9 H 1.09001 * 109.46601 * 145.31053 * 8 7 6 10 10 C 1.52998 * 109.47099 * 265.30904 * 8 7 6 11 11 N 1.46498 * 109.46901 * 25.31327 * 8 7 6 12 12 C 1.34780 * 119.99760 * 155.00019 * 11 8 7 13 13 O 1.21616 * 120.00046 * 359.97438 * 12 11 8 14 14 C 1.47423 * 120.00095 * 179.97438 * 12 11 8 15 15 C 1.39678 * 120.21487 * 359.97438 * 14 12 11 16 16 C 1.37806 * 119.93895 * 180.02562 * 15 14 12 17 17 C 1.38655 * 120.38236 * 0.02562 * 16 15 14 18 18 C 1.37909 * 120.44026 * 359.97180 * 17 16 15 19 19 C 1.39120 * 120.04911 * 359.72819 * 18 17 16 20 20 S 1.76197 * 120.19337 * 180.27590 * 19 18 17 21 21 C 1.76202 * 99.99844 * 6.86069 * 20 19 18 22 22 H 1.07998 * 120.00109 * 5.66798 * 21 20 19 23 23 C 1.38802 * 119.99926 * 185.65685 * 21 20 19 24 24 N 1.31556 * 120.00246 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00244 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46699 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47072 * 120.00260 * 25 23 21 28 28 H 1.48497 * 109.47262 * 240.00467 * 25 23 21 29 29 H 1.08997 * 109.47293 * 89.97478 * 1 2 3 30 30 H 1.09003 * 109.47215 * 209.97135 * 1 2 3 31 31 H 1.08998 * 109.47094 * 329.97470 * 1 2 3 32 32 H 1.09005 * 109.46978 * 90.02578 * 5 4 3 33 33 H 1.09003 * 109.47269 * 330.02801 * 5 4 3 34 34 H 1.08995 * 109.47217 * 210.02327 * 5 4 3 35 35 H 1.07997 * 126.13043 * 179.73291 * 6 4 3 36 36 H 1.09001 * 109.47272 * 60.00560 * 10 8 7 37 37 H 1.09006 * 109.46556 * 180.02562 * 10 8 7 38 38 H 1.09004 * 109.47278 * 300.00200 * 10 8 7 39 39 H 0.96996 * 120.00386 * 334.99748 * 11 8 7 40 40 H 1.08004 * 120.02935 * 0.02630 * 15 14 12 41 41 H 1.07996 * 119.81007 * 179.97438 * 16 15 14 42 42 H 1.08006 * 119.78282 * 179.97438 * 17 16 15 43 43 H 1.07997 * 119.98126 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00172 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 3.6142 -0.7155 -0.0069 7 6 2.3271 -1.1331 -0.0006 8 6 1.8599 -2.5659 -0.0009 9 1 0.9471 -2.6504 0.5889 10 6 1.5817 -3.0113 -1.4379 11 7 2.8988 -3.4183 0.5822 12 6 2.5656 -4.5951 1.1485 13 8 1.4024 -4.9490 1.1758 14 6 3.6111 -5.4533 1.7348 15 6 4.9485 -5.0515 1.7055 16 6 5.9213 -5.8584 2.2548 17 6 5.5810 -7.0697 2.8375 18 6 4.2654 -7.4817 2.8751 19 6 3.2680 -6.6786 2.3316 20 16 1.5851 -7.1980 2.3841 21 6 1.7411 -8.6398 3.3848 22 1 2.6926 -8.8863 3.8323 23 6 0.6409 -9.4588 3.5983 24 7 -0.5181 -9.1588 3.0530 25 14 0.8060 -10.9870 4.6597 26 1 2.2025 -11.0990 5.1523 27 1 -0.1200 -10.8887 5.8165 28 1 0.4668 -12.1879 3.8548 29 1 -0.3634 0.0005 -1.0276 30 1 -0.3634 -0.8903 0.5134 31 1 -0.3633 0.8897 0.5142 32 1 5.0834 1.7145 1.0275 33 1 4.5562 2.4337 -0.5130 34 1 5.6091 0.9986 -0.5150 35 1 4.4891 -1.3487 -0.0130 36 1 2.4945 -2.9267 -2.0277 37 1 1.2433 -4.0475 -1.4380 38 1 0.8087 -2.3769 -1.8718 39 1 3.8265 -3.1359 0.5607 40 1 5.2200 -4.1093 1.2527 41 1 6.9547 -5.5459 2.2306 42 1 6.3512 -7.6947 3.2647 43 1 4.0086 -8.4264 3.3312 44 1 -1.2868 -9.7314 3.2018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075559825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:46 Heat of formation + Delta-G solvation = 46.610740 kcal Electronic energy + Delta-G solvation = -26964.861650 eV Core-core repulsion = 23202.267318 eV Total energy + Delta-G solvation = -3762.594332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36447 -40.89897 -38.98422 -36.71902 -34.77789 -34.74192 -32.92406 -31.74866 -31.15843 -30.72219 -29.63081 -27.81875 -26.44848 -25.13202 -23.70927 -23.26176 -22.12311 -20.82427 -20.67689 -19.83452 -18.84749 -17.60862 -17.31387 -17.02962 -16.78945 -16.51167 -15.98102 -15.78406 -15.58171 -15.25939 -15.19792 -14.68219 -14.59779 -14.45539 -14.27463 -13.97069 -13.88227 -13.43702 -13.29072 -13.24266 -13.00837 -12.99473 -12.91221 -12.85729 -12.78962 -12.51059 -12.11972 -12.02408 -11.62146 -11.43606 -11.38559 -11.18606 -10.38274 -10.19051 -10.13648 -9.85736 -9.74507 -9.30097 -8.43647 -8.42712 -6.21584 0.08344 0.57651 0.90271 1.28078 1.36000 1.46618 1.65892 1.66354 1.68754 2.09172 2.19540 2.32783 2.89925 3.08554 3.27693 3.52312 3.84766 3.94760 4.03189 4.11771 4.22744 4.29974 4.40550 4.45265 4.48298 4.50126 4.64216 4.66468 4.73592 4.78299 4.78452 4.86343 4.89269 5.01872 5.10936 5.11711 5.18513 5.31069 5.39572 5.48719 5.59796 5.62969 5.70488 5.71076 6.12716 6.12897 6.19634 6.69407 6.73420 6.98168 7.43786 8.62397 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.015626 B = 0.002805 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.438799 B = 9980.912775 C =11353.015740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.075 3.925 3 N -0.329 5.329 4 N -0.375 5.375 5 C 0.092 3.908 6 C 0.073 3.927 7 C -0.257 4.257 8 C 0.231 3.769 9 H 0.065 0.935 10 C -0.148 4.148 11 N -0.707 5.707 12 C 0.548 3.452 13 O -0.553 6.553 14 C -0.181 4.181 15 C -0.053 4.053 16 C -0.157 4.157 17 C -0.071 4.071 18 C -0.176 4.176 19 C -0.072 4.072 20 S 0.066 5.934 21 C -0.601 4.601 22 H 0.093 0.907 23 C 0.024 3.976 24 N -0.905 5.905 25 Si 0.992 3.008 26 H -0.257 1.257 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.208 0.792 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.408 0.592 40 H 0.163 0.837 41 H 0.167 0.833 42 H 0.148 0.852 43 H 0.117 0.883 44 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.172 18.936 -7.480 26.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 N -0.153 5.153 4 N -0.156 5.156 5 C -0.047 4.047 6 C -0.075 4.075 7 C -0.269 4.269 8 C 0.126 3.874 9 H 0.084 0.916 10 C -0.206 4.206 11 N -0.361 5.361 12 C 0.337 3.663 13 O -0.433 6.433 14 C -0.194 4.194 15 C -0.073 4.073 16 C -0.180 4.180 17 C -0.092 4.092 18 C -0.202 4.202 19 C -0.191 4.191 20 S 0.324 5.676 21 C -0.748 4.748 22 H 0.111 0.889 23 C -0.182 4.182 24 N -0.540 5.540 25 Si 0.814 3.186 26 H -0.181 1.181 27 H -0.197 1.197 28 H -0.195 1.195 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.108 0.892 34 H 0.138 0.862 35 H 0.225 0.775 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.246 0.754 40 H 0.180 0.820 41 H 0.184 0.816 42 H 0.165 0.835 43 H 0.134 0.866 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.025 20.390 -7.950 25.993 hybrid contribution 0.819 -2.413 1.204 2.818 sum 14.844 17.977 -6.747 24.270 Atomic orbital electron populations 1.20291 0.85896 1.03567 1.03931 1.22454 0.97785 0.89961 0.98917 1.77261 0.87798 1.23173 1.27059 1.48688 1.05687 1.05263 1.55964 1.22242 0.82801 0.95001 1.04668 1.22625 0.99337 0.85281 1.00241 1.19930 0.93329 0.94549 1.19077 1.18830 0.90433 0.83982 0.94185 0.91640 1.22070 1.02627 1.00578 0.95353 1.45673 1.11337 1.19135 1.59950 1.18468 0.88071 0.81805 0.77924 1.90788 1.21386 1.72674 1.58465 1.19508 0.95226 0.95538 1.09148 1.21441 0.89653 0.99834 0.96375 1.21320 1.00732 0.94597 1.01328 1.21531 0.94525 0.96975 0.96177 1.21443 0.93798 1.00761 1.04153 1.22994 1.00692 0.96797 0.98578 1.84941 1.00011 1.24997 1.57603 1.24283 1.00552 1.13579 1.36366 0.88887 1.26132 0.93777 1.01483 0.96777 1.70137 1.01463 1.39375 1.43009 0.85007 0.79173 0.76748 0.77710 1.18094 1.19669 1.19477 0.89082 0.90585 0.90449 0.89677 0.89181 0.86218 0.77520 0.91107 0.94441 0.90697 0.75363 0.81998 0.81564 0.83468 0.86560 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.26 71.24 0.73 -0.82 16 2 C 0.07 1.75 7.22 43.10 0.31 2.06 16 3 N -0.33 -7.80 12.58 -47.38 -0.60 -8.40 16 4 N -0.38 -6.37 4.01 -369.56 -1.48 -7.85 16 5 C 0.09 0.66 11.47 127.77 1.47 2.13 16 6 C 0.07 1.16 10.66 83.54 0.89 2.05 16 7 C -0.26 -5.62 5.22 -20.14 -0.11 -5.72 16 8 C 0.23 6.02 2.81 44.25 0.12 6.14 16 9 H 0.07 2.12 6.85 -2.39 -0.02 2.10 16 10 C -0.15 -3.61 9.47 71.98 0.68 -2.93 16 11 N -0.71 -18.64 4.99 -449.36 -2.24 -20.89 16 12 C 0.55 21.00 7.71 86.66 0.67 21.67 16 13 O -0.55 -27.11 13.43 -4.08 -0.05 -27.17 16 14 C -0.18 -6.80 5.89 -19.95 -0.12 -6.92 16 15 C -0.05 -1.34 9.53 22.52 0.21 -1.13 16 16 C -0.16 -3.62 10.02 22.27 0.22 -3.40 16 17 C -0.07 -2.09 10.02 22.29 0.22 -1.87 16 18 C -0.18 -7.28 9.22 22.40 0.21 -7.07 16 19 C -0.07 -3.37 6.15 23.04 0.14 -3.23 16 20 S 0.07 3.80 18.56 -56.49 -1.05 2.75 16 21 C -0.60 -35.29 9.00 67.95 0.61 -34.68 16 22 H 0.09 5.17 4.98 -2.91 -0.01 5.15 16 23 C 0.02 1.38 5.49 84.87 0.47 1.84 16 24 N -0.90 -55.75 13.22 21.64 0.29 -55.47 16 25 Si 0.99 44.24 29.55 68.60 2.03 46.27 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.58 7.37 -2.39 -0.02 1.56 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.21 1.48 7.06 -2.91 -0.02 1.46 16 36 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.41 7.21 5.03 -92.71 -0.47 6.74 16 40 H 0.16 2.33 6.40 -2.91 -0.02 2.31 16 41 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 42 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 43 H 0.12 5.25 5.03 -2.91 -0.01 5.23 16 44 H 0.28 15.62 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -85.77 380.11 4.20 -81.56 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.58 Total: 21.08 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 6.74 Total: -31.89 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -4.04 Total: -92.61 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.05 Total: 2.75 kcal Total: -85.77 4.20 -81.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075559825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.175 kcal (2) G-P(sol) polarization free energy of solvation -85.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds