Wall clock time and date at job start Wed Apr 1 2020 04:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21564 * 120.00112 * 359.97438 * 14 13 3 16 16 C 1.47861 * 119.99967 * 180.02562 * 14 13 3 17 17 C 1.41520 * 119.90151 * 180.02562 * 16 14 13 18 18 C 1.36408 * 118.23592 * 179.97438 * 17 16 14 19 19 C 1.41162 * 117.94608 * 359.97438 * 18 17 16 20 20 O 1.21983 * 120.21619 * 180.02562 * 19 18 17 21 21 N 1.34608 * 119.57024 * 359.97438 * 19 18 17 22 22 C 1.39879 * 119.10115 * 180.02562 * 21 19 18 23 23 C 1.38899 * 120.08398 * 84.99558 * 22 21 19 24 24 C 1.38093 * 119.94761 * 179.97438 * 23 22 21 25 25 C 1.38320 * 120.12826 * 0.02636 * 24 23 22 26 26 C 1.38248 * 120.17123 * 359.97409 * 25 24 23 27 27 C 1.38330 * 120.04957 * 359.75188 * 26 25 24 28 28 F 1.35102 * 120.06679 * 180.27311 * 27 26 25 29 29 N 1.28394 * 121.79924 * 359.73546 * 21 19 18 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 37 37 H 1.08003 * 120.88369 * 359.97438 * 17 16 14 38 38 H 1.07997 * 121.02581 * 180.02562 * 18 17 16 39 39 H 1.08000 * 120.02985 * 0.02562 * 23 22 21 40 40 H 1.08008 * 119.93889 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.91665 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.97433 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4321 16 6 0.0437 3.3250 -2.6305 17 6 -1.2348 3.9201 -2.7489 18 6 -1.5603 4.5207 -3.9296 19 6 -0.5989 4.5121 -4.9632 20 8 -0.8462 5.0376 -6.0359 21 7 0.5928 3.9212 -4.7571 22 6 1.5383 3.9189 -5.7879 23 6 2.3858 5.0062 -5.9577 24 6 3.3186 5.0007 -6.9760 25 6 3.4104 3.9147 -7.8277 26 6 2.5694 2.8298 -7.6633 27 6 1.6362 2.8252 -6.6422 28 9 0.8179 1.7628 -6.4778 29 7 0.8874 3.3644 -3.6383 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 2.2718 2.1232 -1.9978 37 1 -1.9343 3.8993 -1.9262 38 1 -2.5234 4.9891 -4.0689 39 1 2.3159 5.8549 -5.2935 40 1 3.9778 5.8461 -7.1077 41 1 4.1409 3.9142 -8.6231 42 1 2.6441 1.9833 -8.3298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183788646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:11 Heat of formation + Delta-G solvation = -12.210479 kcal Electronic energy + Delta-G solvation = -30020.855831 eV Core-core repulsion = 25689.497644 eV Total energy + Delta-G solvation = -4331.358187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.25032 -42.50670 -39.48693 -38.93806 -37.79783 -35.45978 -34.81244 -32.67108 -31.83431 -31.19571 -30.86915 -30.00334 -27.14480 -25.94218 -24.79655 -23.36900 -23.14776 -22.61410 -21.22176 -19.56960 -19.10248 -18.59852 -17.83233 -17.32815 -17.12793 -16.68240 -15.94212 -15.86990 -15.81833 -15.38360 -15.22852 -14.65343 -14.52106 -14.41672 -14.08399 -13.67583 -13.64693 -13.24275 -13.02395 -12.74190 -12.72115 -12.46902 -12.12105 -11.81908 -11.70228 -11.55548 -11.28744 -11.01471 -10.88323 -10.68505 -10.38133 -10.23804 -10.07239 -9.71865 -9.59371 -9.36437 -9.14424 -9.10660 -8.79391 -8.54168 -7.94618 -6.15938 -4.25198 0.27186 0.52996 0.75386 1.12987 1.82970 2.89638 3.03650 3.23029 3.30029 3.31838 3.64774 3.70065 3.77126 4.12264 4.30169 4.33135 4.48539 4.52621 4.64610 4.77052 4.82660 4.86898 5.14097 5.17202 5.48923 5.53109 5.57827 5.62548 5.72694 5.76857 5.89449 5.94255 6.35661 6.39327 6.41497 6.60476 7.00011 7.12313 7.24750 7.31881 7.33187 7.55875 7.66004 7.79226 7.85568 8.11995 8.52554 8.68194 8.93901 9.41576 10.89487 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003562 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.672042 B = 7858.063809 C = 9396.617776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.268 3.732 4 H 0.054 0.946 5 C -0.535 4.535 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.681 5.681 14 C 0.569 3.431 15 O -0.532 6.532 16 C 0.041 3.959 17 C -0.024 4.024 18 C -0.195 4.195 19 C 0.485 3.515 20 O -0.521 6.521 21 N -0.300 5.300 22 C 0.088 3.912 23 C -0.059 4.059 24 C -0.121 4.121 25 C -0.071 4.071 26 C -0.148 4.148 27 C 0.130 3.870 28 F -0.127 7.127 29 N -0.184 5.184 30 H 0.051 0.949 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.102 0.898 34 H 0.033 0.967 35 H 0.265 0.735 36 H 0.398 0.602 37 H 0.168 0.832 38 H 0.171 0.829 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 7.524 -17.518 19.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.167 3.833 4 H 0.072 0.928 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.328 5.328 14 C 0.350 3.650 15 O -0.409 6.409 16 C -0.133 4.133 17 C -0.047 4.047 18 C -0.224 4.224 19 C 0.285 3.715 20 O -0.397 6.397 21 N -0.117 5.117 22 C -0.001 4.001 23 C -0.078 4.078 24 C -0.140 4.140 25 C -0.090 4.090 26 C -0.167 4.167 27 C 0.109 3.891 28 F -0.105 7.105 29 N -0.011 5.011 30 H 0.070 0.930 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.231 0.769 37 H 0.185 0.815 38 H 0.188 0.812 39 H 0.156 0.844 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.333 7.392 -17.508 19.147 hybrid contribution 0.281 0.009 -0.045 0.284 sum -2.052 7.401 -17.553 19.159 Atomic orbital electron populations 1.21855 0.98302 0.98305 1.01154 1.21951 0.92663 0.99546 1.02575 1.18941 0.94573 0.89345 0.80413 0.92816 1.21203 0.90479 1.39225 1.06413 0.91952 1.24859 0.98636 0.94687 0.95330 1.69886 1.35175 1.37519 1.09302 0.86449 0.84793 0.77661 0.78230 1.20547 1.21053 1.19819 1.46485 1.13741 1.53550 1.19015 1.17173 0.83783 0.79705 0.84329 1.90808 1.51684 1.60490 1.37887 1.22491 0.92826 1.03540 0.94435 1.22396 0.95124 0.89016 0.98209 1.22631 1.01563 1.05597 0.92638 1.18186 0.82211 0.80646 0.90507 1.90965 1.77259 1.45210 1.26308 1.43768 1.13754 1.45194 1.09011 1.17400 0.95439 0.96489 0.90788 1.21139 0.92613 0.96368 0.97729 1.21129 0.98620 0.99447 0.94801 1.21212 0.97258 0.92028 0.98459 1.21131 0.96223 1.01261 0.98099 1.17801 0.91492 0.83726 0.96072 1.91552 1.70375 1.53734 1.94871 1.71382 1.29611 1.07983 0.92127 0.92954 0.95646 0.94433 0.88012 0.94834 0.92502 0.76859 0.81463 0.81161 0.84364 0.84055 0.84017 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.17 16 3 C 0.27 6.50 2.24 -69.08 -0.15 6.34 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -13.72 8.73 -34.44 -0.30 -14.02 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.93 11.29 55.43 0.63 -23.30 16 9 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.68 -13.92 5.01 -55.87 -0.28 -14.20 16 14 C 0.57 10.86 6.37 -12.32 -0.08 10.78 16 15 O -0.53 -11.27 13.52 5.31 0.07 -11.20 16 16 C 0.04 0.64 6.84 -82.82 -0.57 0.08 16 17 C -0.02 -0.31 9.68 -38.99 -0.38 -0.69 16 18 C -0.19 -2.38 10.11 -39.13 -0.40 -2.78 16 19 C 0.49 7.28 7.43 -15.23 -0.11 7.17 16 20 O -0.52 -8.89 17.04 4.93 0.08 -8.81 16 21 N -0.30 -4.47 3.08 -12.52 -0.04 -4.51 16 22 C 0.09 1.18 4.64 -83.61 -0.39 0.80 16 23 C -0.06 -0.63 9.97 -39.39 -0.39 -1.02 16 24 C -0.12 -0.95 10.04 -39.60 -0.40 -1.35 16 25 C -0.07 -0.51 10.04 -39.55 -0.40 -0.91 16 26 C -0.15 -1.36 10.02 -39.54 -0.40 -1.76 16 27 C 0.13 1.67 7.31 -39.22 -0.29 1.38 16 28 F -0.13 -1.86 17.08 2.25 0.04 -1.82 16 29 N -0.18 -2.87 10.05 33.41 0.34 -2.54 16 30 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 31 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.04 0.78 5.64 -51.93 -0.29 0.48 16 33 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 36 H 0.40 7.57 7.87 -40.82 -0.32 7.25 16 37 H 0.17 1.86 7.72 -52.48 -0.41 1.45 16 38 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.14 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 41 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -31.30 365.82 -7.47 -38.77 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.63 Total: 7.06 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -4.17 Total: -0.11 kcal Atomic # 7 Polarization: -45.19 SS G_CDS: 0.64 Total: -44.54 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.16 Total: -20.00 kcal Atomic # 9 Polarization: -1.86 SS G_CDS: 0.04 Total: -1.82 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.30 -7.47 -38.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183788646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.563 kcal (2) G-P(sol) polarization free energy of solvation -31.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds