Wall clock time and date at job start Wed Apr 1 2020 04:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 109.47194 * 55.00274 * 3 2 1 5 5 C 1.50700 * 109.47526 * 174.99949 * 3 2 1 6 6 H 1.07998 * 119.99966 * 119.99904 * 5 3 2 7 7 C 1.37878 * 120.00064 * 300.00576 * 5 3 2 8 8 N 1.31511 * 119.99697 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 119.99856 * 179.97438 * 7 5 3 10 10 H 1.48510 * 109.47251 * 90.00172 * 9 7 5 11 11 H 1.48500 * 109.47096 * 209.99741 * 9 7 5 12 12 H 1.48494 * 109.47360 * 329.99947 * 9 7 5 13 13 N 1.46501 * 109.47135 * 295.00335 * 3 2 1 14 14 C 1.34777 * 120.00027 * 84.99801 * 13 3 2 15 15 O 1.21564 * 120.00112 * 359.97438 * 14 13 3 16 16 C 1.47861 * 119.99967 * 180.02562 * 14 13 3 17 17 C 1.41520 * 119.90151 * 180.02562 * 16 14 13 18 18 C 1.36408 * 118.23592 * 179.97438 * 17 16 14 19 19 C 1.41162 * 117.94608 * 359.97438 * 18 17 16 20 20 O 1.21983 * 120.21619 * 180.02562 * 19 18 17 21 21 N 1.34608 * 119.57024 * 359.97438 * 19 18 17 22 22 C 1.39879 * 119.10115 * 180.02562 * 21 19 18 23 23 C 1.38899 * 120.08398 * 84.99558 * 22 21 19 24 24 C 1.38093 * 119.94761 * 179.97438 * 23 22 21 25 25 C 1.38320 * 120.12826 * 0.02636 * 24 23 22 26 26 C 1.38248 * 120.17123 * 359.97409 * 25 24 23 27 27 C 1.38330 * 120.04957 * 359.75188 * 26 25 24 28 28 F 1.35102 * 120.06679 * 180.27311 * 27 26 25 29 29 N 1.28394 * 121.79924 * 359.73546 * 21 19 18 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 0.97005 * 119.99685 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00208 * 264.99507 * 13 3 2 37 37 H 1.08003 * 120.88369 * 359.97438 * 17 16 14 38 38 H 1.07997 * 121.02581 * 180.02562 * 18 17 16 39 39 H 1.08000 * 120.02985 * 0.02562 * 23 22 21 40 40 H 1.08008 * 119.93889 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.91665 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.97433 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8783 1.2279 8 7 3.4062 0.3373 2.1732 9 14 6.0050 0.8800 1.3810 10 1 6.4428 2.1130 2.0837 11 1 6.4391 -0.3110 2.1544 12 1 6.6131 0.8396 0.0269 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3414 2.6318 -0.4321 16 6 0.0437 3.3250 -2.6305 17 6 -1.2348 3.9201 -2.7489 18 6 -1.5603 4.5207 -3.9296 19 6 -0.5989 4.5121 -4.9632 20 8 -0.8462 5.0376 -6.0359 21 7 0.5928 3.9212 -4.7571 22 6 1.5383 3.9189 -5.7879 23 6 2.3858 5.0062 -5.9577 24 6 3.3186 5.0007 -6.9760 25 6 3.4104 3.9147 -7.8277 26 6 2.5694 2.8298 -7.6633 27 6 1.6362 2.8252 -6.6422 28 9 0.8179 1.7628 -6.4778 29 7 0.8874 3.3644 -3.6383 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8293 -0.0605 2.9501 36 1 2.2718 2.1232 -1.9978 37 1 -1.9343 3.8993 -1.9262 38 1 -2.5234 4.9891 -4.0689 39 1 2.3159 5.8549 -5.2935 40 1 3.9778 5.8461 -7.1077 41 1 4.1409 3.9142 -8.6231 42 1 2.6441 1.9833 -8.3298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183788646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:10 Heat of formation + Delta-G solvation = -31.508585 kcal Electronic energy + Delta-G solvation = -30021.692660 eV Core-core repulsion = 25689.497644 eV Total energy + Delta-G solvation = -4332.195016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.22514 -43.63348 -40.89842 -39.86696 -39.05343 -37.10391 -36.01557 -34.42582 -33.26944 -32.47791 -31.83832 -31.05172 -28.98597 -27.12706 -25.95064 -24.97224 -24.10092 -23.60880 -22.70457 -21.36417 -20.25853 -19.91879 -18.85591 -18.45701 -18.27213 -17.82069 -17.50942 -17.20255 -16.88775 -16.84834 -16.28702 -16.20974 -15.90867 -15.37129 -15.18715 -14.90328 -14.63773 -14.60105 -14.52259 -14.31668 -13.77025 -13.50956 -13.45883 -13.17234 -13.08851 -12.93302 -12.86971 -12.68228 -12.56406 -12.16999 -12.06561 -11.73054 -11.57691 -11.30094 -11.05582 -11.00071 -10.52319 -10.28483 -9.99390 -9.93138 -9.68503 -8.15114 -6.31623 -0.81745 -0.26169 -0.09681 0.02142 0.76520 1.46253 1.46954 1.57110 1.64631 2.15406 2.33311 2.35966 2.47560 2.92878 2.95282 3.14865 3.44747 3.55846 3.59088 3.74499 3.87045 4.04262 4.13725 4.17814 4.40504 4.52360 4.59282 4.70354 4.74954 4.77664 4.79154 4.87489 4.93929 5.08348 5.12852 5.23990 5.27913 5.43566 5.49341 5.60159 5.68510 5.78246 5.87431 6.16184 6.17290 6.60235 6.72997 6.85754 7.24306 7.42360 8.90179 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.003562 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.672042 B = 7858.063809 C = 9396.617776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.123 4.123 3 C 0.277 3.723 4 H 0.013 0.987 5 C -0.550 4.550 6 H 0.067 0.933 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.966 3.034 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.264 1.264 13 N -0.684 5.684 14 C 0.573 3.427 15 O -0.554 6.554 16 C 0.032 3.968 17 C -0.022 4.022 18 C -0.178 4.178 19 C 0.474 3.526 20 O -0.546 6.546 21 N -0.294 5.294 22 C 0.048 3.952 23 C -0.075 4.075 24 C -0.110 4.110 25 C -0.057 4.057 26 C -0.145 4.145 27 C 0.094 3.906 28 F -0.148 7.148 29 N -0.190 5.190 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.266 0.734 36 H 0.404 0.596 37 H 0.187 0.813 38 H 0.205 0.795 39 H 0.140 0.860 40 H 0.178 0.822 41 H 0.186 0.814 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.135 8.446 -19.798 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.031 0.969 5 C -0.588 4.588 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.791 3.209 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.188 1.188 13 N -0.332 5.332 14 C 0.356 3.644 15 O -0.432 6.432 16 C -0.141 4.141 17 C -0.045 4.045 18 C -0.207 4.207 19 C 0.275 3.725 20 O -0.425 6.425 21 N -0.111 5.111 22 C -0.040 4.040 23 C -0.094 4.094 24 C -0.128 4.128 25 C -0.075 4.075 26 C -0.164 4.164 27 C 0.073 3.927 28 F -0.127 7.127 29 N -0.018 5.018 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.239 0.761 37 H 0.205 0.795 38 H 0.222 0.778 39 H 0.158 0.842 40 H 0.195 0.805 41 H 0.203 0.797 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.008 8.320 -19.803 21.504 hybrid contribution -0.070 -0.221 0.551 0.597 sum -1.078 8.099 -19.253 20.915 Atomic orbital electron populations 1.21705 0.96662 0.99451 1.00517 1.21808 0.94071 0.98890 1.01391 1.18546 0.93911 0.89380 0.80693 0.96869 1.21515 0.91336 1.39219 1.06720 0.91470 1.25669 1.03020 0.94267 0.94972 1.70021 1.36945 1.38154 1.09762 0.85430 0.79451 0.77518 0.78464 1.20306 1.20880 1.18818 1.46256 1.14701 1.54136 1.18070 1.17448 0.82830 0.78930 0.85197 1.90789 1.52121 1.61120 1.39165 1.22043 0.94271 1.04518 0.93264 1.22472 0.94106 0.88825 0.99118 1.22922 1.02049 1.04543 0.91189 1.18661 0.82622 0.80423 0.90830 1.90941 1.77743 1.46474 1.27352 1.43897 1.14251 1.44177 1.08805 1.17881 0.96753 0.98117 0.91267 1.21380 0.93180 0.95773 0.99090 1.21621 0.97440 1.00614 0.93104 1.21761 0.96652 0.90468 0.98596 1.21535 0.95117 1.02723 0.97011 1.18265 0.93017 0.83495 0.97941 1.91486 1.71302 1.54671 1.95216 1.71312 1.29872 1.08064 0.92513 0.94556 0.93546 0.93985 0.90492 0.94494 0.92493 0.76069 0.79536 0.77842 0.84171 0.80477 0.79662 0.81350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.46 8.51 71.98 0.61 -4.84 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.75 16 3 C 0.28 13.86 2.24 44.24 0.10 13.96 16 4 H 0.01 0.77 7.58 -2.38 -0.02 0.76 16 5 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.12 5.29 84.66 0.45 1.57 16 8 N -0.91 -50.57 11.29 21.45 0.24 -50.33 16 9 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 13 N -0.68 -28.65 5.01 -448.94 -2.25 -30.90 16 14 C 0.57 22.27 6.37 86.79 0.55 22.83 16 15 O -0.55 -23.95 13.52 -3.92 -0.05 -24.00 16 16 C 0.03 1.00 6.84 42.55 0.29 1.29 16 17 C -0.02 -0.55 9.68 22.65 0.22 -0.33 16 18 C -0.18 -4.12 10.11 22.56 0.23 -3.89 16 19 C 0.47 14.10 7.43 84.99 0.63 14.74 16 20 O -0.55 -18.58 17.04 -5.26 -0.09 -18.67 16 21 N -0.29 -8.83 3.08 -311.72 -0.96 -9.79 16 22 C 0.05 1.30 4.64 38.23 0.18 1.48 16 23 C -0.07 -1.52 9.97 22.39 0.22 -1.30 16 24 C -0.11 -1.36 10.04 22.25 0.22 -1.14 16 25 C -0.06 -0.60 10.04 22.29 0.22 -0.38 16 26 C -0.14 -2.36 10.02 22.29 0.22 -2.14 16 27 C 0.09 2.39 7.31 22.50 0.16 2.55 16 28 F -0.15 -4.47 17.08 44.97 0.77 -3.70 16 29 N -0.19 -5.99 10.05 -48.21 -0.48 -6.48 16 30 H 0.04 1.66 7.84 -2.39 -0.02 1.64 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.75 5.64 -2.38 -0.01 1.74 16 33 H 0.08 4.13 5.95 -2.39 -0.01 4.11 16 34 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.27 14.00 8.31 -92.70 -0.77 13.23 16 36 H 0.40 15.74 7.87 -92.71 -0.73 15.01 16 37 H 0.19 3.88 7.72 -2.91 -0.02 3.86 16 38 H 0.20 3.24 8.06 -2.91 -0.02 3.22 16 39 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.19 0.37 8.06 -2.91 -0.02 0.34 16 42 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -70.88 365.82 4.26 -66.62 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.35 Total: 23.68 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 4.71 Total: 10.21 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.45 Total: -97.50 kcal Atomic # 8 Polarization: -42.53 SS G_CDS: -0.14 Total: -42.67 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.77 Total: -3.70 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -70.88 4.26 -66.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183788646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.108 kcal (2) G-P(sol) polarization free energy of solvation -70.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds